Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR623G0537 Trochodendron aralioides HOM05D005838 ORTHO05D007177 8.1e-123 443.7 220 100.0
Nn1g07214 Nelumbo nucifera HOM05D005838 ORTHO05D007177 9.0e-98 360.5 199 89.4
Sc11g0007930 Simmondsia chinensis HOM05D005838 ORTHO05D007177 3.2e-95 352.1 199 86.4
TAR369G1142 Trochodendron aralioides HOM05D005838 ORTHO05D007177 3.3e-92 342.0 179 93.9
Aqoxy6G01179 Aquilegia oxysepala HOM05D005838 ORTHO05D007177 9.6e-92 340.5 196 84.2
GSVIVG01024370001 Vitis vinifera HOM05D005838 ORTHO05D007177 6.2e-91 337.8 211 80.1
AUR62012091 Chenopodium quinoa HOM05D005838 ORTHO05D007177 2.4e-90 335.9 192 83.9
AUR62039375 Chenopodium quinoa HOM05D005838 ORTHO05D007177 3.1e-90 335.5 192 83.3
CDE04G0192 Ceratophyllum demersum HOM05D005838 ORTHO05D007177 4.0e-90 335.1 199 83.4
HPP92_027375 Vanilla planifolia HOM05D005838 ORTHO05D007177 4.0e-90 335.1 199 82.4
Aqoxy3G02271 Aquilegia oxysepala HOM05D005838 ORTHO05D007177 6.9e-90 334.3 196 83.2
Hund16085 Selenicereus undatus HOM05D005838 ORTHO05D007177 9.0e-90 334.0 199 83.9
Os01g0248600 Oryza sativa ssp. japonica HOM05D005838 ORTHO05D007177 1.2e-89 333.6 196 82.7
Zm00001eb331580 Zea mays HOM05D005838 ORTHO05D007177 2.9e-88 328.9 196 82.7
Dinv03043 Davidia involucrata HOM05D005838 ORTHO05D007177 6.4e-88 327.8 200 79.5
EL10Ac2g04744 Beta vulgaris HOM05D005838 ORTHO05D007177 5.5e-87 324.7 214 75.7
PSO339G6019 Papaver somniferum HOM05D005838 ORTHO05D007177 2.1e-86 322.8 199 78.9
Dinv26018 Davidia involucrata HOM05D005838 ORTHO05D007177 2.7e-86 322.4 206 77.2
PSO541G0023 Papaver somniferum HOM05D005838 ORTHO05D007177 1.5e-84 316.6 199 79.4
Lj8A84T88 Lonicera japonica HOM05D005838 ORTHO05D007177 6.2e-83 311.2 196 77.0
QL08p059697 Quercus lobata HOM05D005838 ORTHO05D007177 1.4e-82 310.1 212 73.1
MBI14_g35405_MAGBIO Magnolia biondii HOM05D005838 ORTHO05D007177 1.8e-82 309.7 196 81.6
Cc02_g07820 Coffea canephora HOM05D005838 ORTHO05D007177 3.1e-82 308.9 200 77.0
CiPaw.01G287700 Carya illinoinensis HOM05D005838 ORTHO05D007177 9.0e-82 307.4 194 76.8
Hma1.2p1_0405F.1_g145680 Hydrangea macrophylla HOM05D005838 ORTHO05D007177 1.5e-81 306.6 201 75.1
CSS0040522 Camellia sinensis var. sinensis HOM05D005838 ORTHO05D007177 2.6e-81 305.8 197 76.1
Haze_17070 Corylus avellana HOM05D005838 ORTHO05D007177 3.8e-80 302.0 207 72.9
TPR.G2804 Trifolium pratense HOM05D005838 ORTHO05D007177 8.4e-80 300.8 194 76.8
Oeu064376.1 Olea europaea HOM05D005838 ORTHO05D007177 1.1e-79 300.4 204 74.0
VMungo1383G0749 Vigna mungo HOM05D005838 ORTHO05D007177 1.6e-78 296.6 194 73.7
Sed0000199 Sechium edule HOM05D005838 ORTHO05D007177 2.7e-78 295.8 214 69.2
arahy.Tifrunner.gnm1.ann1.5TUK4V Arachis hypogaea HOM05D005838 ORTHO05D007177 3.5e-78 295.4 212 71.2
MELO3C024840.2 Cucumis melo HOM05D005838 ORTHO05D007177 4.6e-78 295.0 214 69.2
Lalb_Chr22g0360471 Lupinus albus HOM05D005838 ORTHO05D007177 6.0e-78 294.7 207 71.5
CsaV3_4G009680 Cucumis sativus L. HOM05D005838 ORTHO05D007177 1.3e-77 293.5 197 73.1
Glyma.16G058300 Glycine max HOM05D005838 ORTHO05D007177 2.3e-77 292.7 209 70.8
Ca_24072_v3 Cicer arietinum L. HOM05D005838 ORTHO05D007177 3.9e-77 292.0 212 70.8
Phvul.001G114700 Phaseolus vulgaris HOM05D005838 ORTHO05D007177 5.1e-77 291.6 194 72.7
CANSAT78G0186 Cannabis sativa HOM05D005838 ORTHO05D007177 8.7e-77 290.8 201 72.1
arahy.Tifrunner.gnm1.ann1.YA5U61 Arachis hypogaea HOM05D005838 ORTHO05D007177 2.5e-76 289.3 211 70.1
arahy.Tifrunner.gnm1.ann1.3RZV8E Arachis hypogaea HOM05D005838 ORTHO05D007177 4.3e-76 288.5 207 71.0
Gohir.A10G219500 Gossypium hirsutum HOM05D005838 ORTHO05D007177 4.3e-76 288.5 194 74.2
Gohir.D10G229000 Gossypium hirsutum HOM05D005838 ORTHO05D007177 4.3e-76 288.5 194 74.2
Gorai.011G261500 Gossypium raimondii HOM05D005838 ORTHO05D007177 4.3e-76 288.5 194 74.2
vmacro10230 Vaccinium macrocarpon HOM05D005838 ORTHO05D007177 5.7e-76 288.1 192 72.4
MSTRG.287 Avicennia marina HOM05D005838 ORTHO05D007177 7.4e-76 287.7 204 71.1
Duzib114G0236 Durio zibethinus HOM05D005838 ORTHO05D007177 7.4e-76 287.7 194 73.7
HanXRQChr14g0458031 Helianthus annuus HOM05D005838 ORTHO05D007177 7.4e-76 287.7 194 71.1
ATR0579G085 Amborella trichopoda HOM05D005838 ORTHO05D007177 9.6e-76 287.3 196 70.9
Thecc.10G041400 Theobroma cacao HOM05D005838 ORTHO05D007177 9.6e-76 287.3 194 74.2
MD01G1134500 Malus domestica HOM05D005838 ORTHO05D007177 1.3e-75 287.0 197 71.1
arahy.Tifrunner.gnm1.ann1.9R8UEA Arachis hypogaea HOM05D005838 ORTHO05D007177 1.6e-75 286.6 207 70.5
HanXRQChr17g0562051 Helianthus annuus HOM05D005838 ORTHO05D007177 1.6e-75 286.6 201 69.2
Eucgr.J00011 Eucalyptus grandis HOM05D005838 ORTHO05D007177 2.1e-75 286.2 198 73.7
SEGI_05999 Sequoiadendron giganteum HOM05D005838 ORTHO05D007177 2.1e-75 286.2 196 72.4
DCAR_011703 Daucus carota HOM05D005838 ORTHO05D007177 2.8e-75 285.8 181 76.8
Rhsim09G0166200 Rhododendron simsii HOM05D005838 ORTHO05D007177 2.8e-75 285.8 192 71.9
Ca_13046_v3 Cicer arietinum L. HOM05D006351 ORTHO05D007796 3.7e-75 285.4 207 70.5
SGA_v2.0_scaffold2G01002 Striga asiatica HOM05D005838 ORTHO05D007177 4.8e-75 285.0 204 71.6
Lsat_1_v5_gn_1_78580 Lactuca sativa HOM05D005838 ORTHO05D007177 6.3e-75 284.6 198 71.7
Migut.M01657 Erythranthe guttata HOM05D005838 ORTHO05D007177 1.1e-74 283.9 204 70.1
FAN06G0860 Fragaria x ananassa HOM05D005838 ORTHO05D007177 1.1e-74 283.9 197 71.6
FAN06G0984 Fragaria x ananassa HOM05D005838 ORTHO05D007177 1.1e-74 283.9 197 71.6
Medtr7g029455 Medicago truncatula HOM05D005838 ORTHO05D007177 1.1e-74 283.9 200 71.5
Prupe.2G235900 Prunus persica HOM05D005838 ORTHO05D007177 1.8e-74 283.1 197 70.1
COL.COLO4_15048 Corchorus olitorius HOM05D005838 ORTHO05D007177 2.4e-74 282.7 210 68.6
MD07G1199100 Malus domestica HOM05D005838 ORTHO05D007177 2.4e-74 282.7 215 65.1
FAN10G2643 Fragaria x ananassa HOM05D005838 ORTHO05D007177 3.1e-74 282.3 197 71.1
RcHm_v2.0_Chr1g0367201 Rosa chinensis HOM05D005838 ORTHO05D007177 4.1e-74 282.0 215 67.0
FvH4_7g22520 Fragaria vesca HOM05D005838 ORTHO05D007177 5.3e-74 281.6 197 71.1
FAN01G2632 Fragaria x ananassa HOM05D005838 ORTHO05D007177 4.5e-73 278.5 192 70.8
Atru.chr12.445 Acer truncatum HOM05D005838 ORTHO05D007177 5.9e-73 278.1 194 70.6
FAN01G2297 Fragaria x ananassa HOM05D005838 ORTHO05D007177 7.6e-73 277.7 192 70.8
Lj1g0024127 Lotus japonicus HOM05D005838 ORTHO05D007177 2.9e-72 275.8 208 66.3
FAN03G0424 Fragaria x ananassa HOM05D005838 ORTHO05D007177 3.8e-72 275.4 190 71.1
Solyc05g054430.4 Solanum lycopersicum HOM05D005838 ORTHO05D007177 5.0e-72 275.0 215 67.0
Sopen05g032920 Solanum pennellii HOM05D005838 ORTHO05D007177 5.0e-72 275.0 215 67.0
PGSC0003DMG402023533 Solanum tuberosum HOM05D005838 ORTHO05D007177 6.5e-72 274.6 215 67.0
Manes.07G116600 Manihot esculenta HOM05D005838 ORTHO05D007177 1.4e-71 273.5 196 70.4
Ciclev10033314m.g Citrus clementina HOM05D005838 ORTHO05D007177 3.2e-71 272.3 179 73.2
CAN.G1013.29 Capsicum annuum HOM05D005838 ORTHO05D007177 5.5e-71 271.6 215 66.5
THA.LOC104827330 Tarenaya hassleriana HOM05D005838 ORTHO05D007177 2.1e-70 269.6 192 69.8
Duzib128G0804 Durio zibethinus HOM05D005838 ORTHO05D007177 4.6e-70 268.5 190 71.6
Aa31sc79G70 Aethionema arabicum HOM05D005838 ORTHO05D007177 6.1e-70 268.1 196 68.4
Sp3g10660 Schrenkiella parvula HOM05D005838 ORTHO05D007177 1.3e-69 266.9 196 67.9
ECA238G0467 Erigeron canadensis HOM05D005838 ORTHO05D007177 1.8e-69 266.5 197 65.5
Sabra10G0157100 Salix brachista HOM05D005838 ORTHO05D007177 6.7e-69 264.6 196 67.9
Potri.010G203600 Populus trichocarpa HOM05D005838 ORTHO05D007177 8.7e-69 264.2 196 67.3
CARHR087030 Cardamine hirsuta HOM05D005838 ORTHO05D007177 1.5e-68 263.5 196 67.3
Thhalv10021517m.g Eutrema salsugineum HOM05D005838 ORTHO05D007177 1.5e-68 263.5 196 66.8
AL3G24160 Arabidopsis lyrata HOM05D005838 ORTHO05D007177 1.9e-68 263.1 196 67.3
Peaxi162Scf00886g00023 Petunia axillaris HOM05D005838 ORTHO05D007177 4.3e-68 261.9 200 67.5
TWI34G1817 Tripterygium wilfordii HOM05D005838 ORTHO05D007177 4.3e-68 261.9 196 67.3
AT3G12530 Arabidopsis thaliana HOM05D005838 ORTHO05D007177 5.7e-68 261.5 196 66.8
SMO358G0240 Selaginella moellendorffii HOM05D005838 ORTHO05D007177 7.4e-68 261.2 183 68.3
Mapoly0001s0197 Marchantia polymorpha HOM05D005838 ORTHO05D007177 1.6e-67 260.0 196 62.2
BolC3t16845H Brassica oleracea HOM05D005838 ORTHO05D007177 2.2e-67 259.6 196 66.3
Pp3c24_19790 Physcomitrium patens HOM05D005838 ORTHO05D007177 3.7e-67 258.8 198 64.1
ECA236G5038 Erigeron canadensis HOM05D005838 ORTHO05D007177 8.2e-67 257.7 186 66.1
BcaB04g21071 Brassica carinata HOM05D005838 ORTHO05D007177 1.1e-66 257.3 200 66.5
BraA03t12920Z Brassica rapa HOM05D005838 ORTHO05D007177 1.4e-66 256.9 196 66.3
Carub.0003s1186 Capsella rubella HOM05D005838 ORTHO05D007177 1.8e-66 256.5 196 65.8
C03p45720 Brassica napus HOM05D005838 ORTHO05D007177 6.9e-66 254.6 189 66.1
Nitab4.5_0008565g0020 Nicotiana tabacum HOM05D005838 ORTHO05D007177 2.0e-65 253.1 224 60.3
A03p37670 Brassica napus HOM05D005838 ORTHO05D007177 3.4e-65 252.3 189 66.1
PGR044G1343 Punica granatum HOM05D005838 ORTHO05D007177 1.1e-60 237.3 198 65.7
Nitab4.5_0025932g0010 Nicotiana tabacum HOM05D005838 ORTHO05D007177 3.3e-60 235.7 197 62.9
Actinidia13881 Actinidia chinensis HOM05D005838 ORTHO05D007177 2.2e-59 233.0 142 79.6
CBR_g83733 Chara braunii HOM05D005838 ORTHO05D007177 2.1e-54 216.5 165 58.8
Phvul.004G101800 Phaseolus vulgaris HOM05D005838 ORTHO05D007177 1.1e-50 204.1 128 74.2
AagrBONN_evm.TU.Sc2ySwM_117.2288 Anthoceros agrestis HOM05D005838 ORTHO05D007177 1.8e-45 186.8 196 50.0
Potri.008G056200 Populus trichocarpa HOM05D005838 ORTHO05D007177 2.2e-43 179.9 196 52.6
SalBow6G6757 Salvia bowleyana HOM05D005838 ORTHO05D007177 3.5e-41 172.6 136 68.4
ECA240G3935 Erigeron canadensis HOM05D005838 ORTHO05D007177 5.7e-36 155.2 99 71.7
PRCOL_00001833 Prasinoderma coloniale HOM05D005838 ORTHO05D007177 1.0e-32 144.4 175 40.6
MCO01G144 Micromonas commoda HOM05D005838 ORTHO05D007177 3.0e-29 132.9 170 43.5
AagrBONN_evm.TU.Sc2ySwM_368.230 Anthoceros agrestis HOM05D005838 ORTHO05D007177 1.3e-27 127.5 114 49.1
Cre01.g029100 Chlamydomonas reinhardtii HOM05D005838 ORTHO05D007177 1.7e-27 127.1 170 42.4
Ah.04g162270 Amaranthus hybridus HOM05D005838 ORTHO05D007177 4.5e-25 119.0 63 82.5
ClCG10G009550 Citrullus lanatus HOM05D005838 ORTHO05D007177 5.0e-24 115.5 63 81.0
unitig_27.g25062 Utricularia gibba HOM05D005838 ORTHO05D007177 2.2e-19 100.1 100 52.0
Cpa.g.sc1.409 Carica papaya HOM05D005838 ORTHO05D007177 8.3e-19 98.2 92 63.0
BcaC09g48252 Brassica carinata HOM05D000758 ORTHO05D001216 1.8e-18 97.1 185 35.7
Oeu048244.1 Olea europaea HOM05D005838 ORTHO05D007177 5.4e-18 95.5 79 62.0
CSS0016900 Camellia sinensis var. sinensis HOM05D005838 ORTHO05D007177 6.6e-16 88.6 46 82.6
BolC5t34206H Brassica oleracea HOM05D005838 ORTHO05D007177 2.3e-13 80.1 83 51.8
C01p52640 Brassica napus HOM05D005838 ORTHO05D007177 8.9e-13 78.2 58 65.5
C05p55400 Brassica napus HOM05D005838 ORTHO05D007177 8.9e-13 78.2 78 51.3
BolC1t05204H Brassica oleracea HOM05D005838 ORTHO05D007177 2.9e-11 73.2 54 64.8
BNapus_Darmor_BZH_scaffold_149p00070 Brassica napus HOM05D005838 ORTHO05D041122 2.0e-09 67.0 150 32.7
Psat7g263960 Pisum sativum HOM05D005838 ORTHO05D007177 1.6e-06 57.4 49 59.2


User provided reference genes

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