Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR623G0471 Trochodendron aralioides HOM05D004070 ORTHO05D004904 0.0e+00 1512.3 735 100.0
Dinv10587 Davidia involucrata HOM05D004070 ORTHO05D004904 0.0e+00 1152.9 733 75.7
Potri.010G184200 Populus trichocarpa HOM05D004070 ORTHO05D004904 4.1e-296 1021.1 697 70.2
vmacro06948 Vaccinium macrocarpon HOM05D004070 ORTHO05D004904 3.2e-293 1011.5 770 64.4
Aqoxy1G01303 Aquilegia oxysepala HOM05D004070 ORTHO05D004904 3.6e-292 1008.1 732 67.3
MD01G1158000 Malus domestica HOM05D004070 ORTHO05D004904 3.0e-291 1005.0 735 66.0
Duzib128G0764 Durio zibethinus HOM05D004070 ORTHO05D004904 8.8e-291 1003.4 687 69.6
Thecc.10G010900 Theobroma cacao HOM05D004070 ORTHO05D004904 1.3e-289 999.6 736 66.6
Rhsim03G0147100 Rhododendron simsii HOM05D004070 ORTHO05D004904 1.7e-289 999.2 731 66.8
Sabra10G0141400 Salix brachista HOM05D004070 ORTHO05D004904 2.8e-289 998.4 722 67.3
Lj1A961T78 Lonicera japonica HOM05D004070 ORTHO05D004904 1.1e-288 996.5 730 65.5
Prupe.2G256300 Prunus persica HOM05D004070 ORTHO05D004904 2.7e-287 991.9 739 65.5
MD07G1226700 Malus domestica HOM05D004070 ORTHO05D004904 5.9e-287 990.7 735 65.2
Nitab4.5_0003710g0040 Nicotiana tabacum HOM05D004070 ORTHO05D004904 4.4e-282 974.5 734 63.6
QL08p063798 Quercus lobata HOM05D004070 ORTHO05D004904 7.5e-282 973.8 735 64.4
Peaxi162Scf00284g00526 Petunia axillaris HOM05D004070 ORTHO05D004904 6.3e-281 970.7 696 66.4
Rhsim03G0146900 Rhododendron simsii HOM05D004070 ORTHO05D004904 8.3e-281 970.3 701 67.6
Gorai.012G079500 Gossypium raimondii HOM05D004070 ORTHO05D004904 4.1e-280 968.0 748 63.8
Nitab4.5_0000058g0090 Nicotiana tabacum HOM05D004070 ORTHO05D004904 4.1e-280 968.0 726 63.6
Ciclev10030777m.g Citrus clementina HOM05D004070 ORTHO05D004904 7.0e-280 967.2 733 64.1
Manes.10G008700 Manihot esculenta HOM05D004070 ORTHO05D004904 7.0e-280 967.2 733 64.3
RcHm_v2.0_Chr1g0370971 Rosa chinensis HOM05D004070 ORTHO05D004904 1.0e-278 963.4 736 64.7
Lj8A62T48 Lonicera japonica HOM05D004070 ORTHO05D004904 1.7e-278 962.6 626 73.5
DCAR_011846 Daucus carota HOM05D004070 ORTHO05D004904 1.6e-276 956.1 736 63.7
TWI73G0078 Tripterygium wilfordii HOM05D004070 ORTHO05D004904 1.6e-276 956.1 733 63.2
Sopen06g016660 Solanum pennellii HOM05D004070 ORTHO05D004904 4.7e-276 954.5 724 63.8
Lj6g0014816 Lotus japonicus HOM05D004070 ORTHO05D004904 8.0e-276 953.7 738 63.4
Gorai.011G290600 Gossypium raimondii HOM05D004070 ORTHO05D004904 1.4e-275 953.0 695 66.6
Gohir.A10G238300 Gossypium hirsutum HOM05D004070 ORTHO05D004904 1.8e-275 952.6 695 66.3
Atru.chr12.102 Acer truncatum HOM05D004070 ORTHO05D004904 2.3e-275 952.2 683 66.6
Oeu043174.1 Olea europaea HOM05D004070 ORTHO05D004904 5.2e-275 951.0 731 65.3
Solyc06g050930.3 Solanum lycopersicum HOM05D004070 ORTHO05D004904 5.2e-275 951.0 724 63.4
Gohir.D10G250200 Gossypium hirsutum HOM05D004070 ORTHO05D004904 8.8e-275 950.3 695 66.5
FvH4_7g25120 Fragaria vesca HOM05D004070 ORTHO05D004904 5.7e-274 947.6 725 63.7
CAN.G19.7 Capsicum annuum HOM05D004070 ORTHO05D004904 3.7e-273 944.9 729 63.4
CiPaw.02G195800 Carya illinoinensis HOM05D004070 ORTHO05D004904 1.4e-272 943.0 723 63.6
CiPaw.12G018900 Carya illinoinensis HOM05D004070 ORTHO05D004904 4.1e-272 941.4 699 65.1
Haze_17281 Corylus avellana HOM05D004070 ORTHO05D004904 4.5e-271 937.9 745 63.9
Potri.010G184300 Populus trichocarpa HOM05D004070 ORTHO05D004904 4.5e-271 937.9 729 62.8
TPR.G27736 Trifolium pratense HOM05D004070 ORTHO05D004904 4.5e-271 937.9 692 65.0
Psat5g130680 Pisum sativum HOM05D004070 ORTHO05D004904 7.8e-271 937.2 733 63.4
Glyma.11G232700 Glycine max HOM05D004070 ORTHO05D004904 1.3e-270 936.4 730 63.7
FAN01G1500 Fragaria x ananassa HOM05D004070 ORTHO05D004904 1.7e-270 936.0 754 61.9
FAN03G3092 Fragaria x ananassa HOM05D004070 ORTHO05D004904 3.8e-270 934.9 742 62.7
Glyma.18G024300 Glycine max HOM05D004070 ORTHO05D004904 8.6e-270 933.7 729 63.4
MSTRG.8925 Avicennia marina HOM05D004070 ORTHO05D004904 1.1e-269 933.3 698 65.3
Medtr3g071610 Medicago truncatula HOM05D004070 ORTHO05D004904 1.9e-269 932.6 729 62.1
PSO765G0033 Papaver somniferum HOM05D004070 ORTHO05D004904 5.6e-269 931.0 740 61.4
Lsat_1_v5_gn_2_125521 Lactuca sativa HOM05D004070 ORTHO05D004904 8.0e-268 927.2 737 63.0
PSO349G0044 Papaver somniferum HOM05D004070 ORTHO05D004904 1.4e-267 926.4 740 61.1
Phvul.001G245900 Phaseolus vulgaris HOM05D004070 ORTHO05D004904 5.2e-267 924.5 722 63.0
SalBow3G2100 Salvia bowleyana HOM05D004070 ORTHO05D004904 6.8e-267 924.1 696 65.5
Ca_15154_v3 Cicer arietinum L. HOM05D004070 ORTHO05D004904 1.2e-266 923.3 695 64.6
Eucgr.J00174 Eucalyptus grandis HOM05D004070 ORTHO05D004904 4.4e-266 921.4 747 61.7
EL10Ac2g04896 Beta vulgaris HOM05D004070 ORTHO05D004904 7.5e-266 920.6 732 61.3
FAN06G4674 Fragaria x ananassa HOM05D004070 ORTHO05D004904 1.3e-265 919.8 765 60.4
SalBow3G0248 Salvia bowleyana HOM05D004070 ORTHO05D004904 4.9e-265 917.9 696 65.1
Haze_17272 Corylus avellana HOM05D004070 ORTHO05D004904 1.1e-264 916.8 745 62.8
Migut.F00635 Erythranthe guttata HOM05D004070 ORTHO05D004904 2.7e-263 912.1 694 64.0
VMungo1383G0354 Vigna mungo HOM05D004070 ORTHO05D004904 2.7e-263 912.1 721 62.4
Lalb_Chr08g0231511 Lupinus albus HOM05D004070 ORTHO05D004904 4.6e-263 911.4 734 60.8
GSVIVG01032751001 Vitis vinifera HOM05D004070 ORTHO05D004904 1.5e-261 906.4 598 73.6
Nn2g10988 Nelumbo nucifera HOM05D004070 ORTHO05D004904 4.3e-261 904.8 684 65.4
Glyma.14G056500 Glycine max HOM05D004070 ORTHO05D004904 9.5e-261 903.7 687 63.9
AUR62022946 Chenopodium quinoa HOM05D004070 ORTHO05D004904 1.1e-259 900.2 731 60.3
Duzib106G0498 Durio zibethinus HOM05D004070 ORTHO05D004904 2.3e-259 899.0 717 61.6
SGA_v2.0_scaffold60G20962 Striga asiatica HOM05D004070 ORTHO05D004904 3.1e-259 898.7 698 63.0
AUR62012305 Chenopodium quinoa HOM05D004070 ORTHO05D004904 2.2e-257 892.5 732 59.8
ECA238G2061 Erigeron canadensis HOM05D004070 ORTHO05D004904 6.4e-257 891.0 691 63.0
Glyma.02G262300 Glycine max HOM05D004070 ORTHO05D004904 5.4e-256 887.9 696 62.2
Glyma.14G056600 Glycine max HOM05D004070 ORTHO05D004904 7.0e-256 887.5 684 63.0
CANSAT56G1738 Cannabis sativa HOM05D004070 ORTHO05D004904 4.6e-255 884.8 694 61.4
VMungo0647G1128 Vigna mungo HOM05D004070 ORTHO05D004904 1.0e-254 883.6 685 62.2
PGR044G0681 Punica granatum HOM05D004070 ORTHO05D004904 6.6e-254 880.9 730 59.3
Gohir.A05G332000 Gossypium hirsutum HOM05D004070 ORTHO05D004904 2.1e-252 875.9 641 66.5
HanXRQChr17g0536301 Helianthus annuus HOM05D004070 ORTHO05D004904 2.1e-252 875.9 734 58.6
ATR0174G011 Amborella trichopoda HOM05D004070 ORTHO05D004904 8.1e-252 874.0 744 58.5
Migut.F01473 Erythranthe guttata HOM05D004070 ORTHO05D004904 2.9e-249 865.5 707 61.0
Sabra10G0141500 Salix brachista HOM05D004070 ORTHO05D004904 7.1e-248 860.9 892 51.9
Cc02_g06030 Coffea canephora HOM05D004070 ORTHO05D004904 2.8e-244 849.0 600 69.7
Ciclev10031026m.g Citrus clementina HOM05D004070 ORTHO05D004904 6.8e-243 844.3 625 65.1
Sed0002479 Sechium edule HOM05D004070 ORTHO05D004904 3.4e-242 842.0 698 59.7
Gohir.D04G070700 Gossypium hirsutum HOM05D004070 ORTHO05D004904 7.8e-239 830.9 747 57.2
CsaV3_5G010510 Cucumis sativus L. HOM05D004070 ORTHO05D004904 3.6e-236 822.0 697 57.7
ClCG07G004560 Citrullus lanatus HOM05D004070 ORTHO05D004904 2.4e-235 819.3 694 58.1
CSS0045603 Camellia sinensis var. sinensis HOM05D004070 ORTHO05D004904 1.9e-232 809.7 542 72.5
arahy.Tifrunner.gnm1.ann1.PDR9Z8 Arachis hypogaea HOM05D004070 ORTHO05D004904 1.4e-227 793.5 740 54.3
ClCG07G004550 Citrullus lanatus HOM05D004070 ORTHO05D004904 3.1e-227 792.3 692 57.7
arahy.Tifrunner.gnm1.ann1.DADU25 Arachis hypogaea HOM05D004070 ORTHO05D004904 7.6e-226 787.7 787 52.1
CsaV3_5G010500 Cucumis sativus L. HOM05D004070 ORTHO05D004904 1.3e-225 786.9 730 53.8
AT5G05460 Arabidopsis thaliana HOM05D004070 ORTHO05D004904 2.2e-225 786.2 689 54.7
CARHR207790 Cardamine hirsuta HOM05D004070 ORTHO05D004904 2.7e-223 779.2 707 53.9
BraA03t09594Z Brassica rapa HOM05D004070 ORTHO05D004904 7.9e-223 777.7 686 54.2
AL6G15350 Arabidopsis lyrata HOM05D004070 ORTHO05D004904 1.3e-222 776.9 689 54.0
A03p02310 Brassica napus HOM05D004070 ORTHO05D004904 1.8e-222 776.5 689 54.0
FAN10G1680 Fragaria x ananassa HOM05D004070 ORTHO05D004904 2.5e-221 772.7 678 58.6
Carub.0003s1033 Capsella rubella HOM05D004070 ORTHO05D004904 9.6e-221 770.8 743 52.8
SEGI_36115 Sequoiadendron giganteum HOM05D004070 ORTHO05D004904 9.6e-221 770.8 773 49.5
CARHR085620 Cardamine hirsuta HOM05D004070 ORTHO05D004904 1.3e-220 770.4 744 52.8
BcaB01g05761 Brassica carinata HOM05D004070 ORTHO05D004904 1.6e-220 770.0 689 53.4
Sp3g09370 Schrenkiella parvula HOM05D004070 ORTHO05D004904 2.1e-220 769.6 693 54.7
Ah.16g103890 Amaranthus hybridus HOM05D004070 ORTHO05D004904 2.8e-220 769.2 684 57.6
Carub.0006s0436 Capsella rubella HOM05D004070 ORTHO05D004904 3.7e-220 768.8 689 54.0
PGR142G0892 Punica granatum HOM05D004070 ORTHO05D004904 4.8e-220 768.5 692 57.5
C03p02630 Brassica napus HOM05D004070 ORTHO05D004904 1.4e-219 766.9 689 53.4
BcaB01g05950 Brassica carinata HOM05D004070 ORTHO05D004904 6.9e-219 764.6 689 53.3
BolC3t12817H Brassica oleracea HOM05D004070 ORTHO05D004904 6.9e-219 764.6 689 53.3
Thhalv10012879m.g Eutrema salsugineum HOM05D004070 ORTHO05D004904 9.0e-219 764.2 687 52.5
THA.LOC104816686 Tarenaya hassleriana HOM05D004070 ORTHO05D004904 2.6e-218 762.7 748 51.2
Sp6g37380 Schrenkiella parvula HOM05D004070 ORTHO05D004904 8.4e-217 757.7 704 51.3
Aa31LG3G4060 Aethionema arabicum HOM05D004070 ORTHO05D004904 1.4e-216 756.9 696 54.9
BcaB04g21158 Brassica carinata HOM05D004070 ORTHO05D004904 3.2e-216 755.7 743 52.2
AT3G11040 Arabidopsis thaliana HOM05D004070 ORTHO05D004904 9.3e-216 754.2 741 51.7
arahy.Tifrunner.gnm1.ann1.T4ULTV Arachis hypogaea HOM05D004070 ORTHO05D004904 9.3e-216 754.2 689 56.2
Os05g0346500 Oryza sativa ssp. japonica HOM05D004070 ORTHO05D004904 1.0e-214 750.7 687 53.6
Aa31LG11G6530 Aethionema arabicum HOM05D004070 ORTHO05D004904 6.7e-214 748.0 693 51.9
Thhalv10020200m.g Eutrema salsugineum HOM05D004070 ORTHO05D004904 3.3e-213 745.7 693 53.0
BolC1t05338H Brassica oleracea HOM05D004070 ORTHO05D004904 1.6e-212 743.4 757 50.7
AL3G22590 Arabidopsis lyrata HOM05D004070 ORTHO05D004904 4.0e-211 738.8 693 52.2
arahy.Tifrunner.gnm1.ann1.L3EDXB Arachis hypogaea HOM05D004070 ORTHO05D004904 1.2e-210 737.3 690 55.4
MELO3C018386.2 Cucumis melo HOM05D004070 ORTHO05D004904 1.7e-209 733.4 703 53.6
CANSAT56G2024 Cannabis sativa HOM05D004070 ORTHO05D004904 2.3e-206 723.0 695 54.5
CDE06G0669 Ceratophyllum demersum HOM05D004070 ORTHO05D004904 2.2e-204 716.5 657 54.6
Manes.10G008500 Manihot esculenta HOM05D004070 ORTHO05D004904 8.5e-201 704.5 565 61.6
MELO3C018385.2 Cucumis melo HOM05D004070 ORTHO05D004904 4.6e-199 698.7 740 49.6
BcaC09g48150 Brassica carinata HOM05D004070 ORTHO05D004904 3.1e-195 686.0 635 55.1
unitig_32.g11775 Utricularia gibba HOM05D004070 ORTHO05D004904 2.8e-188 662.9 715 49.8
Sc11g0005320 Simmondsia chinensis HOM05D004070 ORTHO05D004904 2.4e-187 659.8 545 60.0
COL.COLO4_25787 Corchorus olitorius HOM05D004070 ORTHO05D004904 1.7e-185 653.7 732 48.5
AL467U10010 Arabidopsis lyrata HOM05D004070 ORTHO05D004904 8.0e-183 644.8 693 47.9
HPP92_006774 Vanilla planifolia HOM05D004070 ORTHO05D004904 7.0e-179 631.7 688 48.8
Zm00001eb347620 Zea mays HOM05D004070 ORTHO05D004904 4.5e-162 575.9 554 53.2
BcaC09g48154 Brassica carinata HOM05D004070 ORTHO05D004904 1.1e-134 485.0 325 68.0
SMO351G0021 Selaginella moellendorffii HOM05D004070 ORTHO05D004904 9.2e-131 471.9 426 51.4
Cpa.g.sc19.130 Carica papaya HOM05D004070 ORTHO05D004904 1.9e-128 464.2 388 56.7
PSO478G2175 Papaver somniferum HOM05D004070 ORTHO05D004904 4.7e-119 433.0 297 67.0
SGA_v2.0_scaffold395G50725 Striga asiatica HOM05D004070 ORTHO05D004904 5.8e-117 426.0 413 52.5
Glyma.02G262251 Glycine max HOM05D004070 ORTHO05D004904 7.6e-117 425.6 415 53.7
Dinv21779 Davidia involucrata HOM05D004070 ORTHO05D004904 4.5e-109 399.8 214 86.0
BraA01t04204Z Brassica rapa HOM05D004070 ORTHO05D004904 9.0e-102 375.6 477 43.0
CBR_g6382 Chara braunii HOM05D004070 ORTHO05D004904 9.9e-101 372.1 368 49.5
PGSC0003DMG400023947 Solanum tuberosum HOM05D004070 ORTHO05D004904 3.3e-96 357.1 338 55.0
Pp3c4_19160 Physcomitrium patens HOM05D004070 ORTHO05D004904 9.6e-96 355.5 573 35.6
Mapoly0073s0082 Marchantia polymorpha HOM05D004070 ORTHO05D004904 3.9e-89 333.6 576 35.9
Cre13.g582250 Chlamydomonas reinhardtii HOM05D004070 ORTHO05D004904 4.5e-85 320.1 327 47.1
AagrBONN_evm.TU.Sc2ySwM_362.570 Anthoceros agrestis HOM05D004070 ORTHO05D004904 1.1e-83 315.5 551 34.3
Glyma.02G262200 Glycine max HOM05D004070 ORTHO05D004904 2.8e-63 247.7 145 75.2
Cpa.g.sc19.132 Carica papaya HOM05D004070 ORTHO05D004904 4.8e-63 246.9 261 51.0
BraA01t04205Z Brassica rapa HOM05D004070 ORTHO05D004904 5.0e-60 236.9 205 58.5
SGA_v2.0_scaffold395G50724 Striga asiatica HOM05D004070 ORTHO05D004904 8.8e-57 226.1 139 75.5
Sopen01g021300 Solanum pennellii HOM05D004070 ORTHO05D004904 4.2e-51 207.2 222 48.6
Potri.008G073001 Populus trichocarpa HOM05D004070 ORTHO05D004904 9.4e-51 206.1 212 48.6
SGA_v2.0_scaffold395G50723 Striga asiatica HOM05D004070 ORTHO05D004904 8.3e-47 193.0 130 62.3
Atru.chr12.101 Acer truncatum HOM05D004070 ORTHO05D004904 1.6e-45 188.7 183 55.7
BcaB07g33013 Brassica carinata HOM05D004070 ORTHO05D004904 2.7e-45 188.0 229 44.1
MELO3C034437.2 Cucumis melo HOM05D004070 ORTHO05D004904 3.5e-45 187.6 129 65.9
AT3G61010 Arabidopsis thaliana HOM05D004070 ORTHO05D004904 1.2e-42 179.1 399 31.3
Dinv21778 Davidia involucrata HOM05D004070 ORTHO05D004904 1.2e-42 179.1 294 39.8
BcaB04g21152 Brassica carinata HOM05D004070 ORTHO05D004904 1.6e-34 152.1 99 68.7
BcaB04g21155 Brassica carinata HOM05D004070 ORTHO05D004904 1.6e-34 152.1 99 68.7
BcaB04g21156 Brassica carinata HOM05D004070 ORTHO05D004904 1.6e-34 152.1 99 68.7
arahy.Tifrunner.gnm1.ann1.0XTL3F Arachis hypogaea HOM05D004070 ORTHO05D004904 2.3e-33 148.3 133 51.9
BraA01t04203Z Brassica rapa HOM05D000053 ORTHO05D000035 2.8e-26 124.8 266 31.6
Sabra08G0054200 Salix brachista HOM05D004070 ORTHO05D004904 1.1e-25 122.9 250 34.8
arahy.Tifrunner.gnm1.ann1.JYP4ZT Arachis hypogaea HOM05D004070 ORTHO05D004904 8.9e-25 119.8 150 42.0
BolC1t05337H Brassica oleracea HOM05D000053 ORTHO05D000035 1.2e-24 119.4 271 29.9
Potri.008G072901 Populus trichocarpa HOM05D004070 ORTHO05D004904 7.1e-22 110.2 120 47.5
BcaB03g16457 Brassica carinata HOM05D004070 ORTHO05D032257 1.2e-18 99.4 59 72.9
CsaV3_5G010480 Cucumis sativus L. HOM05D004070 ORTHO05D004904 1.2e-18 99.4 218 32.6
arahy.Tifrunner.gnm1.ann1.N2R911 Arachis hypogaea HOM05D004070 ORTHO05D004904 4.0e-17 94.4 79 57.0
BcaB07g33265 Brassica carinata HOM05D004070 ORTHO05D032257 6.0e-13 80.5 48 68.8
BcaB07g33267 Brassica carinata HOM05D004070 ORTHO05D032257 6.0e-13 80.5 48 68.8
BcaC06g31359 Brassica carinata HOM05D004070 ORTHO05D000295 2.8e-10 71.6 46 69.6


User provided reference genes

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