Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR623G0394 Trochodendron aralioides HOM05D004925 ORTHO05D005643 2.9e-177 625.2 327 100.0
TAR369G0809 Trochodendron aralioides HOM05D004925 ORTHO05D005643 2.7e-130 469.2 327 75.5
Nn2g15712 Nelumbo nucifera HOM05D004925 ORTHO05D005643 4.1e-115 418.7 331 68.0
Dinv43491 Davidia involucrata HOM05D004925 ORTHO05D005643 4.2e-83 312.4 291 60.8
Dinv43931 Davidia involucrata HOM05D004925 ORTHO05D005643 7.1e-83 311.6 333 54.7
GSVIVG01001367001 Vitis vinifera HOM05D004925 ORTHO05D005643 3.6e-79 299.3 280 61.4
Hma1.2p1_0860F.1_g229570 Hydrangea macrophylla HOM05D004925 ORTHO05D005643 6.4e-76 288.5 338 51.5
CsaV3_3G032460 Cucumis sativus L. HOM05D004925 ORTHO05D005643 1.2e-66 257.7 290 52.1
ClCG10G012660 Citrullus lanatus HOM05D004925 ORTHO05D005643 5.1e-65 252.3 290 50.7
MBI19_g23208_MAGBIO Magnolia biondii HOM05D004925 ORTHO05D005643 5.1e-65 252.3 333 49.2
Cfa004806 Carpinus fangiana HOM05D004925 ORTHO05D005643 1.9e-64 250.4 311 49.8
CiPaw.13G000800 Carya illinoinensis HOM05D004925 ORTHO05D005643 5.7e-64 248.8 263 55.5
Aqoxy1G00133 Aquilegia oxysepala HOM05D004925 ORTHO05D005643 1.3e-63 247.7 321 48.3
Rhsim01G0134400 Rhododendron simsii HOM05D004925 ORTHO05D005643 5.3e-62 242.3 261 53.6
Manes.10G151100 Manihot esculenta HOM05D004925 ORTHO05D005643 1.5e-61 240.7 289 52.2
TWI09G1281 Tripterygium wilfordii HOM05D004925 ORTHO05D005643 4.5e-61 239.2 289 49.1
Atru.chr11.2695 Acer truncatum HOM05D004925 ORTHO05D005643 3.8e-60 236.1 269 52.4
Haze_10419 Corylus avellana HOM05D006965 ORTHO05D008652 1.9e-59 233.8 259 52.1
Haze_10424 Corylus avellana HOM05D006965 ORTHO05D008652 1.9e-59 233.8 259 52.1
MELO3C030929.2 Cucumis melo HOM05D004925 ORTHO05D005643 2.1e-58 230.3 343 43.4
vmacro12585 Vaccinium macrocarpon HOM05D004925 ORTHO05D005643 2.7e-58 229.9 311 46.3
CANSAT11G0505 Cannabis sativa HOM05D004925 ORTHO05D005643 1.0e-57 228.0 342 44.2
TWI73G1095 Tripterygium wilfordii HOM05D004925 ORTHO05D005643 3.0e-57 226.5 290 48.6
Actinidia15855 Actinidia chinensis HOM05D004925 ORTHO05D005643 5.1e-57 225.7 299 48.8
PSO384G4128 Papaver somniferum HOM05D004925 ORTHO05D005643 2.6e-53 213.4 279 48.0
Potri.001G229800 Populus trichocarpa HOM05D004925 ORTHO05D005643 2.6e-53 213.4 344 43.6
Peaxi162Scf00878g00036 Petunia axillaris HOM05D004925 ORTHO05D005643 4.2e-51 206.1 325 44.6
MD02G1318600 Malus domestica HOM05D004925 ORTHO05D005643 2.1e-50 203.8 306 42.8
MD07G1002600 Malus domestica HOM05D004925 ORTHO05D005643 7.9e-50 201.8 317 43.2
Sed0010000 Sechium edule HOM05D004925 ORTHO05D005643 5.1e-49 199.1 258 46.5
AL4G28340 Arabidopsis lyrata HOM05D004925 ORTHO05D005643 8.8e-49 198.4 285 44.6
QL04p000066 Quercus lobata HOM05D004925 ORTHO05D005643 3.3e-48 196.4 322 41.3
vmacro21158 Vaccinium macrocarpon HOM05D004925 ORTHO05D005643 4.3e-48 196.1 324 41.4
Sopen01g033490 Solanum pennellii HOM05D004925 ORTHO05D005643 7.4e-48 195.3 331 41.4
THA.LOC104801020 Tarenaya hassleriana HOM05D004925 ORTHO05D005643 1.7e-47 194.1 274 44.5
Solyc01g073920.3 Solanum lycopersicum HOM05D004925 ORTHO05D005643 2.2e-47 193.7 331 41.1
Carub.0004s1427 Capsella rubella HOM05D004925 ORTHO05D005643 2.8e-47 193.4 259 44.8
COL.COLO4_25137 Corchorus olitorius HOM05D004925 ORTHO05D005643 6.3e-47 192.2 258 45.0
Hund25510 Selenicereus undatus HOM05D004925 ORTHO05D005643 6.3e-47 192.2 338 39.9
CAN.G261.6 Capsicum annuum HOM05D004925 ORTHO05D005643 4.1e-46 189.5 175 60.6
QL04p003160 Quercus lobata HOM05D004925 ORTHO05D005643 2.0e-45 187.2 328 40.5
AT2G32840 Arabidopsis thaliana HOM05D004925 ORTHO05D005643 2.6e-45 186.8 338 39.6
CDE04G0753 Ceratophyllum demersum HOM05D004925 ORTHO05D005643 2.6e-45 186.8 278 43.9
Nitab4.5_0000892g0140 Nicotiana tabacum HOM05D004925 ORTHO05D005643 4.5e-45 186.0 359 40.9
vmacro21156 Vaccinium macrocarpon HOM05D004925 ORTHO05D005643 5.9e-45 185.7 306 39.9
Oeu053533.1 Olea europaea HOM05D004925 ORTHO05D005643 1.3e-44 184.5 318 42.8
PSO339G6120 Papaver somniferum HOM05D004925 ORTHO05D005643 1.7e-44 184.1 263 46.0
Gohir.D08G037401 Gossypium hirsutum HOM05D004925 ORTHO05D005643 2.9e-44 183.3 168 57.7
Thecc.01G416300 Theobroma cacao HOM05D004925 ORTHO05D005643 8.5e-44 181.8 272 42.6
Sc17g0006850 Simmondsia chinensis HOM05D004925 ORTHO05D005643 1.4e-43 181.0 284 41.5
MSTRG.5000 Avicennia marina HOM05D004925 ORTHO05D005643 4.2e-43 179.5 300 43.0
Gohir.A08G026720 Gossypium hirsutum HOM05D004925 ORTHO05D005643 1.6e-42 177.6 253 43.1
Gorai.004G035400 Gossypium raimondii HOM05D004925 ORTHO05D005643 2.7e-42 176.8 262 42.0
SGA_v2.0_scaffold95G28775 Striga asiatica HOM05D004925 ORTHO05D005643 1.0e-41 174.9 279 41.9
SalBow4G1354 Salvia bowleyana HOM05D004925 ORTHO05D005643 1.4e-41 174.5 294 42.5
SalBow4G3044 Salvia bowleyana HOM05D004925 ORTHO05D005643 1.4e-41 174.5 294 42.5
Migut.N01664 Erythranthe guttata HOM05D004925 ORTHO05D005643 1.8e-41 174.1 260 44.6
Cpa.g.sc189.17 Carica papaya HOM05D004925 ORTHO05D005643 3.0e-41 173.3 157 63.1
Lsat_1_v5_gn_1_110881 Lactuca sativa HOM05D004925 ORTHO05D005643 3.9e-41 172.9 283 41.7
Cc02_g27070 Coffea canephora HOM05D004925 ORTHO05D005643 1.1e-40 171.4 274 44.9
ECA248G0029 Erigeron canadensis HOM05D004925 ORTHO05D005643 1.1e-40 171.4 251 41.8
PGR119G0958 Punica granatum HOM05D004925 ORTHO05D005643 2.0e-40 170.6 290 40.7
HanXRQChr01g0018661 Helianthus annuus HOM05D004925 ORTHO05D005643 2.6e-40 170.2 266 42.5
Sp4g15220 Schrenkiella parvula HOM05D004925 ORTHO05D005643 4.4e-40 169.5 325 37.5
FAN03G1097 Fragaria x ananassa HOM05D004925 ORTHO05D005643 5.7e-40 169.1 224 47.8
Sed0003173 Sechium edule HOM05D004925 ORTHO05D005643 7.4e-40 168.7 324 39.5
RcHm_v2.0_Chr1g0313411 Rosa chinensis HOM05D004925 ORTHO05D005643 9.7e-40 168.3 200 48.5
Ciclev10032226m.g Citrus clementina HOM05D004925 ORTHO05D005643 1.3e-39 167.9 305 41.0
Glyma.08G148900 Glycine max HOM05D004925 ORTHO05D005643 1.3e-39 167.9 284 41.5
FvH4_7g00160 Fragaria vesca HOM05D004925 ORTHO05D005643 1.7e-39 167.5 155 59.4
FAN06G2494 Fragaria x ananassa HOM05D004925 ORTHO05D005643 1.7e-39 167.5 155 59.4
Duzib114G0283 Durio zibethinus HOM05D004925 ORTHO05D005643 2.2e-39 167.2 263 42.6
FAN01G2076 Fragaria x ananassa HOM05D004925 ORTHO05D005643 2.8e-39 166.8 223 47.1
vmacro21157 Vaccinium macrocarpon HOM05D004925 ORTHO05D005643 2.8e-39 166.8 351 34.5
CARHR126790 Cardamine hirsuta HOM05D004925 ORTHO05D005643 6.3e-39 165.6 323 38.7
Thhalv10016920m.g Eutrema salsugineum HOM05D004925 ORTHO05D005643 6.3e-39 165.6 327 37.0
FAN10G2396 Fragaria x ananassa HOM05D004925 ORTHO05D005643 6.3e-39 165.6 245 44.5
FAN01G0312 Fragaria x ananassa HOM05D004925 ORTHO05D005643 1.1e-38 164.9 233 45.9
arahy.Tifrunner.gnm1.ann1.WEBP2W Arachis hypogaea HOM05D004925 ORTHO05D005643 1.8e-38 164.1 255 42.7
Lj3g0011601 Lotus japonicus HOM05D004925 ORTHO05D005643 2.4e-38 163.7 308 41.2
Eucgr.G03409 Eucalyptus grandis HOM05D004925 ORTHO05D005643 4.1e-38 162.9 262 41.2
Phvul.005G039900 Phaseolus vulgaris HOM05D004925 ORTHO05D005643 5.3e-38 162.5 260 43.5
Sp1g03770 Schrenkiella parvula HOM05D004925 ORTHO05D005643 5.3e-38 162.5 280 42.1
Aa31LG5G4490 Aethionema arabicum HOM05D004925 ORTHO05D005643 1.0e-36 158.3 320 36.6
Glyma.15G269200 Glycine max HOM05D004925 ORTHO05D005643 1.3e-36 157.9 274 42.0
Oeu024926.1 Olea europaea HOM05D004925 ORTHO05D005643 3.8e-36 156.4 343 34.4
Prupe.2G004100 Prunus persica HOM05D004925 ORTHO05D005643 6.5e-36 155.6 297 40.1
arahy.Tifrunner.gnm1.ann1.BFX48A Arachis hypogaea HOM05D004925 ORTHO05D005643 1.5e-35 154.5 277 40.8
Ca_02951_v3 Cicer arietinum L. HOM05D004925 ORTHO05D005643 1.2e-34 151.4 254 41.7
Actinidia21578 Actinidia chinensis HOM05D004925 ORTHO05D005643 3.6e-34 149.8 189 49.2
CDE06G1226 Ceratophyllum demersum HOM05D004925 ORTHO05D005643 2.3e-33 147.1 332 36.4
Lalb_Chr03g0033881 Lupinus albus HOM05D004925 ORTHO05D005643 2.3e-33 147.1 159 52.8
A10p03360 Brassica napus HOM05D004925 ORTHO05D005643 4.0e-33 146.4 337 37.1
BraA10t42612Z Brassica rapa HOM05D004925 ORTHO05D005643 4.0e-33 146.4 339 37.2
Lalb_Chr25g0283541 Lupinus albus HOM05D004925 ORTHO05D005643 1.5e-32 144.4 270 37.0
Zm00001eb399260 Zea mays HOM05D004925 ORTHO05D005643 2.0e-32 144.1 291 36.1
Rhsim06G0015600 Rhododendron simsii HOM05D004925 ORTHO05D005643 3.3e-32 143.3 297 35.7
CSS0015862 Camellia sinensis var. sinensis HOM05D004925 ORTHO05D005643 5.7e-32 142.5 137 55.5
Medtr2g060910 Medicago truncatula HOM05D004925 ORTHO05D005643 5.7e-32 142.5 191 47.1
C05p03080 Brassica napus HOM05D004925 ORTHO05D005643 7.4e-32 142.1 296 37.5
BcaB01g00977 Brassica carinata HOM05D004925 ORTHO05D005643 3.7e-31 139.8 292 38.4
unitig_22.g5889 Utricularia gibba HOM05D004925 ORTHO05D005643 6.3e-31 139.0 253 39.9
A05p12810 Brassica napus HOM05D004925 ORTHO05D005643 8.2e-31 138.7 267 42.3
HanXRQChr11g0341641 Helianthus annuus HOM05D004925 ORTHO05D005643 2.4e-30 137.1 219 43.4
C04p16720 Brassica napus HOM05D004925 ORTHO05D005643 3.1e-30 136.7 303 38.3
Medtr4g125960 Medicago truncatula HOM05D004925 ORTHO05D005643 3.1e-30 136.7 283 38.9
TPR.G11699 Trifolium pratense HOM05D004925 ORTHO05D005643 3.1e-30 136.7 140 55.0
HanXRQChr11g0341651 Helianthus annuus HOM05D004925 ORTHO05D005643 7.0e-30 135.6 209 45.0
BcaB02g10501 Brassica carinata HOM05D004925 ORTHO05D005643 2.6e-29 133.7 294 37.4
AT1G04930 Arabidopsis thaliana HOM05D004925 ORTHO05D005643 3.5e-29 133.3 252 36.5
BolC4t23220H Brassica oleracea HOM05D004925 ORTHO05D005643 7.7e-29 132.1 272 41.2
BraA05t20219Z Brassica rapa HOM05D004925 ORTHO05D005643 1.3e-28 131.3 272 40.8
THA.LOC104816029 Tarenaya hassleriana HOM05D004925 ORTHO05D005643 2.2e-28 130.6 194 43.3
Thhalv10009447m.g Eutrema salsugineum HOM05D004925 ORTHO05D005643 8.5e-28 128.6 155 50.3
Aa31LG1G19930 Aethionema arabicum HOM05D004925 ORTHO05D005643 1.1e-27 128.3 319 33.5
HanXRQChr11g0341871 Helianthus annuus HOM05D004925 ORTHO05D005643 1.1e-27 128.3 138 51.4
BolC5t29090H Brassica oleracea HOM05D004925 ORTHO05D005643 1.9e-27 127.5 323 34.4
Nitab4.5_0005278g0010 Nicotiana tabacum HOM05D004925 ORTHO05D005643 1.2e-26 124.8 284 38.7
ATR0598G164 Amborella trichopoda HOM05D004925 ORTHO05D005643 2.7e-26 123.6 265 39.6
SGA_v2.0_scaffold4G02236 Striga asiatica HOM05D001227 ORTHO05D001082 6.8e-25 119.0 283 34.6
CARHR004330 Cardamine hirsuta HOM05D004925 ORTHO05D005643 1.5e-24 117.9 152 47.4
SEGI_38326 Sequoiadendron giganteum HOM05D004925 ORTHO05D005643 2.6e-24 117.1 217 39.2
HPP92_020314 Vanilla planifolia HOM05D004925 ORTHO05D005643 4.4e-24 116.3 378 32.8
AL1G14650 Arabidopsis lyrata HOM05D004925 ORTHO05D005643 2.2e-23 114.0 253 34.8
AUR62015612 Chenopodium quinoa HOM05D004925 ORTHO05D005643 1.4e-22 111.3 175 41.7
Os03g0234600 Oryza sativa ssp. japonica HOM05D004925 ORTHO05D005643 8.5e-20 102.1 208 34.1
Mapoly0040s0118 Marchantia polymorpha HOM05D004925 ORTHO05D005643 3.2e-19 100.1 162 42.0
EL10Ac8g20283 Beta vulgaris HOM05D004925 ORTHO05D005643 2.7e-18 97.1 305 29.2
Hma1.2p1_3637F.1_g337120 Hydrangea macrophylla HOM05D004925 ORTHO05D005643 3.6e-18 96.7 154 41.6
Sabra16G0137500 Salix brachista HOM05D004925 ORTHO05D005643 1.4e-17 94.7 226 35.8
HanXRQChr11g0341671 Helianthus annuus HOM05D004925 ORTHO05D005643 8.8e-17 92.0 209 37.3
Lj7A564G31 Lonicera japonica HOM05D004925 ORTHO05D005643 1.5e-16 91.3 93 50.5
Sabra16G0137200 Salix brachista HOM05D004925 ORTHO05D005643 1.7e-15 87.8 95 54.7
Pp3c22_21740 Physcomitrium patens HOM05D004925 ORTHO05D005643 4.9e-15 86.3 233 33.5
Haze_10406 Corylus avellana HOM05D004925 ORTHO05D005643 3.1e-14 83.6 65 63.1
CSS0038538 Camellia sinensis var. sinensis HOM05D004925 ORTHO05D005643 7.7e-13 79.0 79 53.2
A09p67630 Brassica napus HOM05D004925 ORTHO05D005643 3.8e-12 76.6 109 45.9
BcaB03g16450 Brassica carinata HOM05D000563 ORTHO05D005643 9.5e-11 72.0 92 43.5
Oeu013586.1 Olea europaea HOM05D004925 ORTHO05D005643 9.5e-11 72.0 81 48.1
BcaB03g16451 Brassica carinata HOM05D004925 ORTHO05D005643 4.7e-10 69.7 88 44.3
SMO137G0159 Selaginella moellendorffii HOM05D004925 ORTHO05D005643 4.0e-09 66.6 247 30.0
DCAR_024991 Daucus carota HOM05D004925 ORTHO05D005643 6.8e-09 65.9 239 28.0
BcaB03g16455 Brassica carinata HOM05D004489 ORTHO05D005643 4.4e-08 63.2 86 41.9
PGSC0003DMG400006329 Solanum tuberosum HOM05D004925 ORTHO05D005643 5.7e-08 62.8 286 27.3
BraA09t42096Z Brassica rapa HOM05D000053 ORTHO05D000035 4.9e-07 59.7 83 44.6
Haze_10420 Corylus avellana HOM05D002938 ORTHO05D002074 1.8e-06 57.8 136 33.1
Haze_10425 Corylus avellana HOM05D002938 ORTHO05D002074 1.8e-06 57.8 136 33.1
AagrBONN_evm.TU.Sc2ySwM_340.484 Anthoceros agrestis HOM05D004925 ORTHO05D005643 4.1e-06 56.6 170 30.0


User provided reference genes

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