Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR623G0393 Trochodendron aralioides HOM05D002241 ORTHO05D033932 2.6e-61 238.4 111 100.0
TAR636G2734 Trochodendron aralioides HOM05D002241 ORTHO05D002458 1.2e-21 106.7 47 100.0
Atru.chr12.1151 Acer truncatum HOM05D002241 ORTHO05D002458 7.6e-13 77.4 46 71.7
Dinv11895 Davidia involucrata HOM05D002241 ORTHO05D002458 7.6e-13 77.4 47 76.6
Atru.chr12.1148 Acer truncatum HOM05D002241 ORTHO05D002458 1.0e-12 77.0 46 69.6
MSTRG.19325 Avicennia marina HOM05D002241 ORTHO05D002458 1.1e-11 73.6 47 68.1
Oeu035661.1 Olea europaea HOM05D002241 ORTHO05D002458 1.4e-11 73.2 47 66.0
MSTRG.26590 Avicennia marina HOM05D002241 ORTHO05D002458 1.9e-11 72.8 47 68.1
GSVIVG01022530001 Vitis vinifera HOM05D002241 ORTHO05D002458 1.9e-11 72.8 92 45.7
Dinv25079 Davidia involucrata HOM05D002241 ORTHO05D002458 4.2e-11 71.6 47 72.3
Nitab4.5_0000721g0060 Nicotiana tabacum HOM05D002241 ORTHO05D002458 5.5e-11 71.2 53 58.5
Potri.008G013300 Populus trichocarpa HOM05D002241 ORTHO05D002458 5.5e-11 71.2 46 67.4
Cfa020072 Carpinus fangiana HOM05D002241 ORTHO05D002458 7.2e-11 70.9 48 60.4
MBI05_g03322_MAGBIO Magnolia biondii HOM05D002241 ORTHO05D002458 7.2e-11 70.9 47 63.8
Aqoxy7G00669 Aquilegia oxysepala HOM05D002241 ORTHO05D002458 9.4e-11 70.5 49 59.2
Haze_20123 Corylus avellana HOM05D002241 ORTHO05D002458 9.4e-11 70.5 48 60.4
Manes.10G071200 Manihot esculenta HOM05D002241 ORTHO05D002458 9.4e-11 70.5 45 64.4
Nitab4.5_0004995g0050 Nicotiana tabacum HOM05D002241 ORTHO05D002458 1.2e-10 70.1 47 66.0
Thecc.10G122800 Theobroma cacao HOM05D002241 ORTHO05D002458 1.6e-10 69.7 47 66.0
Aqoxy1G00595 Aquilegia oxysepala HOM05D002241 ORTHO05D002458 3.6e-10 68.6 49 57.1
Nitab4.5_0007076g0020 Nicotiana tabacum HOM05D002241 ORTHO05D002458 4.6e-10 68.2 47 63.8
Peaxi162Scf00203g00315 Petunia axillaris HOM05D002241 ORTHO05D002458 6.1e-10 67.8 47 63.8
CANSAT56G0284 Cannabis sativa HOM05D002241 ORTHO05D002458 7.9e-10 67.4 46 63.0
CAN.G388.46 Capsicum annuum HOM05D002241 ORTHO05D002458 1.4e-09 66.6 47 61.7
MD02G1260600 Malus domestica HOM05D002241 ORTHO05D002458 1.4e-09 66.6 47 57.4
DCAR_013458 Daucus carota HOM05D002241 ORTHO05D002458 1.8e-09 66.2 47 63.8
GSVIVG01029753001 Vitis vinifera HOM05D002241 ORTHO05D002458 1.8e-09 66.2 47 61.7
Cc06_g06940 Coffea canephora HOM05D002241 ORTHO05D002458 2.3e-09 65.9 47 61.7
Solyc10g081660.2 Solanum lycopersicum HOM05D002241 ORTHO05D002458 2.3e-09 65.9 47 59.6
Sopen10g032170 Solanum pennellii HOM05D002241 ORTHO05D002458 2.3e-09 65.9 47 59.6
Sopen01g002740 Solanum pennellii HOM05D002241 ORTHO05D002458 3.0e-09 65.5 48 64.6
HPP92_016639 Vanilla planifolia HOM05D002241 ORTHO05D002458 3.0e-09 65.5 47 59.6
Actinidia37775 Actinidia chinensis HOM05D002241 ORTHO05D002458 3.9e-09 65.1 76 44.7
CiPaw.14G036900 Carya illinoinensis HOM05D002241 ORTHO05D002458 5.1e-09 64.7 95 41.1
Nn1g09622 Nelumbo nucifera HOM05D002241 ORTHO05D002458 5.1e-09 64.7 47 61.7
Rhsim09G0022800 Rhododendron simsii HOM05D002241 ORTHO05D002458 5.1e-09 64.7 44 65.9
vmacro00633 Vaccinium macrocarpon HOM05D002241 ORTHO05D002458 5.1e-09 64.7 76 44.7
Aqoxy1G00598 Aquilegia oxysepala HOM05D002241 ORTHO05D002458 6.7e-09 64.3 49 55.1
PGSC0003DMG400021341 Solanum tuberosum HOM05D002241 ORTHO05D002458 6.7e-09 64.3 48 62.5
PGSC0003DMG400028134 Solanum tuberosum HOM05D002241 ORTHO05D002458 6.7e-09 64.3 47 59.6
SGA_v2.0_scaffold392G50687 Striga asiatica HOM05D002241 ORTHO05D002458 8.8e-09 63.9 48 62.5
DCAR_006634 Daucus carota HOM05D002241 ORTHO05D002458 1.1e-08 63.5 48 52.1
Solyc01g006740.4 Solanum lycopersicum HOM05D002241 ORTHO05D002458 1.1e-08 63.5 48 62.5
Duzib114G0523 Durio zibethinus HOM05D002241 ORTHO05D002458 1.5e-08 63.2 46 58.7
Gorai.009G301900 Gossypium raimondii HOM05D002241 ORTHO05D002458 1.9e-08 62.8 46 58.7
CAN.G674.35 Capsicum annuum HOM05D002241 ORTHO05D002458 2.5e-08 62.4 44 61.4
Medtr1g040560 Medicago truncatula HOM05D002241 ORTHO05D002458 2.5e-08 62.4 45 55.6
Sc01g0005660 Simmondsia chinensis HOM05D002241 ORTHO05D002458 2.5e-08 62.4 99 39.4
Oeu058127.3 Olea europaea HOM05D002241 ORTHO05D002458 3.3e-08 62.0 47 57.4
Atru.chr8.1292 Acer truncatum HOM05D002241 ORTHO05D002458 5.7e-08 61.2 44 59.1
TWI75G1026 Tripterygium wilfordii HOM05D002241 ORTHO05D002458 9.7e-08 60.5 47 59.6
Prupe.5G001900 Prunus persica HOM05D002241 ORTHO05D002458 1.3e-07 60.1 47 51.1
SalBow6G5315 Salvia bowleyana HOM05D002241 ORTHO05D002458 1.7e-07 59.7 46 58.7
CiPaw.10G020700 Carya illinoinensis HOM05D002241 ORTHO05D002458 2.2e-07 59.3 44 54.5
Lj6g0026471 Lotus japonicus HOM05D002241 ORTHO05D002458 2.2e-07 59.3 40 57.5
Psat6g049360 Pisum sativum HOM05D002241 ORTHO05D002458 2.8e-07 58.9 43 55.8
Migut.J00731 Erythranthe guttata HOM05D002241 ORTHO05D002458 3.7e-07 58.5 47 53.2
Cpa.g.sc36.95 Carica papaya HOM05D002241 ORTHO05D002458 4.8e-07 58.2 46 56.5
Dinv01521 Davidia involucrata HOM05D002241 ORTHO05D033932 4.8e-07 58.2 45 55.6
Hma1.2p1_0401F.1_g144750 Hydrangea macrophylla HOM05D002241 ORTHO05D002458 4.8e-07 58.2 47 55.3
AUR62034149 Chenopodium quinoa HOM05D002241 ORTHO05D002458 6.3e-07 57.8 46 56.5
CSS0045680 Camellia sinensis var. sinensis HOM05D002241 ORTHO05D033932 8.2e-07 57.4 49 55.1
HanXRQChr14g0453231 Helianthus annuus HOM05D002241 ORTHO05D002458 1.4e-06 56.6 47 55.3
MD12G1045400 Malus domestica HOM05D002241 ORTHO05D002458 1.4e-06 56.6 79 40.5
unitig_8.g4300 Utricularia gibba HOM05D002241 ORTHO05D002458 1.4e-06 56.6 34 70.6
Ciclev10015425m.g Citrus clementina HOM05D002241 ORTHO05D002458 1.8e-06 56.2 46 52.2
Haze_03419 Corylus avellana HOM05D002241 ORTHO05D002458 1.8e-06 56.2 36 66.7
MD14G1044300 Malus domestica HOM05D002241 ORTHO05D002458 1.8e-06 56.2 79 40.5
Thhalv10011514m.g Eutrema salsugineum HOM05D002241 ORTHO05D002458 2.4e-06 55.8 45 51.1
FvH4_7g05160 Fragaria vesca HOM05D002241 ORTHO05D002458 4.1e-06 55.1 47 48.9
Phvul.007G233700 Phaseolus vulgaris HOM05D002241 ORTHO05D002458 4.1e-06 55.1 45 48.9
Potri.016G066100 Populus trichocarpa HOM05D002241 ORTHO05D002458 4.1e-06 55.1 47 46.8
HPP92_011040 Vanilla planifolia HOM05D002241 ORTHO05D002458 4.1e-06 55.1 57 49.1
ECA248G0810 Erigeron canadensis HOM05D002241 ORTHO05D002458 5.3e-06 54.7 47 53.2
Sed0002055 Sechium edule HOM05D002241 ORTHO05D002458 5.3e-06 54.7 47 51.1
Prupe.7G089300 Prunus persica HOM05D002241 ORTHO05D002458 6.9e-06 54.3 47 53.2
Sabra16G0067400 Salix brachista HOM05D002241 ORTHO05D002458 6.9e-06 54.3 47 48.9
Thecc.05G109800 Theobroma cacao HOM05D002241 ORTHO05D002458 6.9e-06 54.3 47 48.9
MELO3C009570.2 Cucumis melo HOM05D002241 ORTHO05D002458 9.1e-06 53.9 47 51.1
CsaV3_3G038290 Cucumis sativus L. HOM05D002241 ORTHO05D002458 9.1e-06 53.9 47 48.9
PSO339G4420 Papaver somniferum HOM05D002241 ORTHO05D002458 9.1e-06 53.9 47 51.1
PSO384G4048 Papaver somniferum HOM05D002241 ORTHO05D002458 9.1e-06 53.9 47 46.8
RcHm_v2.0_Chr1g0331691 Rosa chinensis HOM05D002241 ORTHO05D002458 9.1e-06 53.9 47 46.8


User provided reference genes

Program Settings