Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR623G0385 Trochodendron aralioides HOM05D006039 ORTHO05D006797 2.0e-253 878.6 458 100.0
Dinv36292 Davidia involucrata HOM05D006039 ORTHO05D006797 1.9e-134 483.4 468 59.0
CSS0020882 Camellia sinensis var. sinensis HOM05D006039 ORTHO05D006797 1.8e-129 466.8 465 58.5
CSS0048119 Camellia sinensis var. sinensis HOM05D006039 ORTHO05D006797 4.1e-129 465.7 465 58.3
Aqoxy3G00443 Aquilegia oxysepala HOM05D006039 ORTHO05D006797 1.3e-127 460.7 465 57.6
MBI01_g36435_MAGBIO Magnolia biondii HOM05D006039 ORTHO05D006797 5.0e-127 458.8 467 57.4
PSO384G3161 Papaver somniferum HOM05D006039 ORTHO05D006797 1.1e-121 441.0 470 56.6
PSO339G2813 Papaver somniferum HOM05D006039 ORTHO05D006797 1.6e-120 437.2 470 56.4
Nitab4.5_0000175g0040 Nicotiana tabacum HOM05D006039 ORTHO05D006797 1.2e-115 421.0 445 55.5
Rhsim01G0190000 Rhododendron simsii HOM05D006039 ORTHO05D006797 2.6e-115 419.9 466 54.3
Nn7g36093 Nelumbo nucifera HOM05D006039 ORTHO05D006797 7.5e-115 418.3 465 52.5
Actinidia06328 Actinidia chinensis HOM05D006039 ORTHO05D006797 2.3e-111 406.8 465 51.6
Sc16g0011650 Simmondsia chinensis HOM05D006039 ORTHO05D006797 3.9e-111 406.0 465 55.1
TWI32G0154 Tripterygium wilfordii HOM05D006039 ORTHO05D006797 8.6e-111 404.8 465 51.8
Eucgr.B03667 Eucalyptus grandis HOM05D006039 ORTHO05D006797 9.5e-110 401.4 464 50.0
Solyc11g056640.3 Solanum lycopersicum HOM05D006039 ORTHO05D006797 2.8e-109 399.8 447 53.0
Nitab4.5_0002278g0050 Nicotiana tabacum HOM05D006039 ORTHO05D006797 1.5e-107 394.0 448 53.1
QL01p005703 Quercus lobata HOM05D006039 ORTHO05D006797 2.0e-107 393.7 485 49.5
Atru.chr3.2554 Acer truncatum HOM05D006039 ORTHO05D006797 8.4e-106 388.3 472 53.0
GSVIVG01025314001 Vitis vinifera HOM05D006039 ORTHO05D006797 1.3e-103 380.9 405 56.0
Haze_23073 Corylus avellana HOM05D006039 ORTHO05D006797 6.6e-103 378.6 467 50.1
Thecc.09G226300 Theobroma cacao HOM05D006039 ORTHO05D006797 6.2e-101 372.1 447 50.3
Lj1C361T2 Lonicera japonica HOM05D006039 ORTHO05D006797 2.4e-100 370.2 469 50.1
Manes.06G167800 Manihot esculenta HOM05D006039 ORTHO05D006797 5.2e-100 369.0 462 49.1
Sabra01G0012000 Salix brachista HOM05D006039 ORTHO05D006797 6.9e-100 368.6 457 51.0
CANSAT54G2219 Cannabis sativa HOM05D006039 ORTHO05D006797 1.5e-99 367.5 463 50.1
ClCG02G023440 Citrullus lanatus HOM05D006039 ORTHO05D006797 3.4e-99 366.3 471 48.4
CiPaw.14G122300 Carya illinoinensis HOM05D006039 ORTHO05D006797 1.3e-98 364.4 417 52.5
vmacro12713 Vaccinium macrocarpon HOM05D006039 ORTHO05D006797 1.3e-98 364.4 461 50.3
Potri.003G207400 Populus trichocarpa HOM05D006039 ORTHO05D006797 2.2e-98 363.6 459 49.9
Lj3g0020392 Lotus japonicus HOM05D006039 ORTHO05D006797 2.9e-98 363.2 470 50.0
Peaxi162Scf00839g00234 Petunia axillaris HOM05D006039 ORTHO05D006797 2.9e-98 363.2 446 52.9
MELO3C014616.2 Cucumis melo HOM05D006039 ORTHO05D006797 2.4e-97 360.1 475 46.9
Potri.001G017100 Populus trichocarpa HOM05D006039 ORTHO05D006797 3.5e-96 356.3 458 48.9
Prupe.6G022100 Prunus persica HOM05D006039 ORTHO05D006797 6.0e-96 355.5 497 46.9
MSTRG.17577 Avicennia marina HOM05D006039 ORTHO05D006797 1.3e-95 354.4 474 47.5
CsaV3_4G024070 Cucumis sativus L. HOM05D006039 ORTHO05D006797 1.7e-95 354.0 479 46.8
Duzib168G2100 Durio zibethinus HOM05D006039 ORTHO05D006797 1.7e-95 354.0 448 49.3
Manes.14G013400 Manihot esculenta HOM05D006039 ORTHO05D006797 2.3e-95 353.6 450 48.0
COL.COLO4_24829 Corchorus olitorius HOM05D006039 ORTHO05D006797 3.0e-95 353.2 448 48.9
Cc01_g04400 Coffea canephora HOM05D006039 ORTHO05D006797 6.6e-95 352.1 451 48.8
Sed0010144 Sechium edule HOM05D006039 ORTHO05D006797 1.9e-94 350.5 458 47.8
Nn2g15509 Nelumbo nucifera HOM05D006039 ORTHO05D006797 9.6e-94 348.2 344 59.0
Ah.06g193560 Amaranthus hybridus HOM05D006039 ORTHO05D006797 2.1e-93 347.1 485 47.0
Glyma.15G032500 Glycine max HOM05D006039 ORTHO05D006797 2.1e-93 347.1 467 49.0
Cpa.g.sc84.90 Carica papaya HOM05D006039 ORTHO05D006797 8.1e-93 345.1 461 48.2
EL10Ac4g10308 Beta vulgaris HOM05D006039 ORTHO05D006797 1.4e-92 344.4 461 49.0
Lalb_Chr22g0352291 Lupinus albus HOM05D006039 ORTHO05D006797 2.4e-92 343.6 444 49.3
TAR636G1066 Trochodendron aralioides HOM05D004785 ORTHO05D005704 2.4e-92 343.6 473 46.9
MSTRG.12478 Avicennia marina HOM05D006039 ORTHO05D006797 4.0e-92 342.8 461 47.1
Duzib150G0354 Durio zibethinus HOM05D006039 ORTHO05D006797 4.0e-92 342.8 447 47.4
Glyma.13G341800 Glycine max HOM05D006039 ORTHO05D006797 7.6e-91 338.6 470 48.5
Oeu014066.1 Olea europaea HOM05D006039 ORTHO05D006797 2.2e-90 337.0 418 50.7
Gohir.A13G216000 Gossypium hirsutum HOM05D006039 ORTHO05D006797 2.9e-90 336.7 404 52.2
Medtr2g098330 Medicago truncatula HOM05D006039 ORTHO05D006797 3.8e-90 336.3 451 47.7
Lsat_1_v5_gn_1_67181 Lactuca sativa HOM05D006039 ORTHO05D006797 3.2e-89 333.2 471 46.3
SalBow4G0075 Salvia bowleyana HOM05D006039 ORTHO05D006797 3.2e-89 333.2 470 44.5
SalBow4G2759 Salvia bowleyana HOM05D006039 ORTHO05D006797 3.2e-89 333.2 470 44.5
MD11G1028000 Malus domestica HOM05D006039 ORTHO05D006797 5.4e-89 332.4 504 43.1
Ciclev10014934m.g Citrus clementina HOM05D006039 ORTHO05D006797 3.5e-88 329.7 519 43.7
VMungo1080G1590 Vigna mungo HOM05D006039 ORTHO05D006797 1.3e-87 327.8 458 47.4
Migut.N02301 Erythranthe guttata HOM05D006039 ORTHO05D006797 5.1e-87 325.9 464 45.7
Lalb_Chr24g0396971 Lupinus albus HOM05D006039 ORTHO05D006797 1.9e-86 323.9 463 47.7
PGR102G2927 Punica granatum HOM05D006039 ORTHO05D006797 3.3e-86 323.2 473 47.1
arahy.Tifrunner.gnm1.ann1.CQR7QS Arachis hypogaea HOM05D006039 ORTHO05D006797 4.3e-86 322.8 451 48.3
ECA233G1597 Erigeron canadensis HOM05D006039 ORTHO05D006797 6.2e-85 318.9 460 46.3
DCAR_002046 Daucus carota HOM05D006039 ORTHO05D006797 8.1e-85 318.5 488 43.4
Gohir.D13G219700 Gossypium hirsutum HOM05D006039 ORTHO05D006797 1.4e-84 317.8 420 49.5
THA.LOC104804971 Tarenaya hassleriana HOM05D006039 ORTHO05D006797 5.3e-84 315.8 451 45.9
SGA_v2.0_scaffold247G44833 Striga asiatica HOM05D006039 ORTHO05D006797 9.0e-84 315.1 493 42.8
RcHm_v2.0_Chr5g0077351 Rosa chinensis HOM05D006039 ORTHO05D006797 1.2e-83 314.7 442 47.1
Psat5g288280 Pisum sativum HOM05D006039 ORTHO05D006797 3.4e-83 313.2 512 43.0
HanXRQChr13g0403991 Helianthus annuus HOM05D006039 ORTHO05D006797 9.9e-83 311.6 467 44.3
FAN11G0272 Fragaria x ananassa HOM05D006039 ORTHO05D006797 2.4e-81 307.0 416 47.1
AUR62019256 Chenopodium quinoa HOM05D006039 ORTHO05D006797 7.1e-81 305.4 464 46.3
Phvul.L011043 Phaseolus vulgaris HOM05D006039 ORTHO05D006797 9.3e-81 305.1 451 45.7
FAN21G1726 Fragaria x ananassa HOM05D006039 ORTHO05D006797 5.1e-79 299.3 424 45.5
FAN25G3739 Fragaria x ananassa HOM05D006039 ORTHO05D006797 5.1e-79 299.3 424 45.8
Cfa009721 Carpinus fangiana HOM05D006039 ORTHO05D006797 1.3e-77 294.7 314 54.8
Migut.D00567 Erythranthe guttata HOM05D006039 ORTHO05D006797 9.0e-76 288.5 463 42.3
AUR62005725 Chenopodium quinoa HOM05D006039 ORTHO05D006797 2.9e-74 283.5 457 44.4
CARHR200520 Cardamine hirsuta HOM05D006039 ORTHO05D006797 3.8e-74 283.1 463 41.7
Sp6g31030 Schrenkiella parvula HOM05D006039 ORTHO05D006797 1.4e-73 281.2 360 46.7
arahy.Tifrunner.gnm1.ann1.IJ2E5N Arachis hypogaea HOM05D006039 ORTHO05D006797 1.9e-73 280.8 466 43.6
Aa31LG3G14700 Aethionema arabicum HOM05D006389 ORTHO05D007863 9.3e-73 278.5 450 42.0
THA.LOC104799094 Tarenaya hassleriana HOM05D006039 ORTHO05D006797 1.6e-72 277.7 450 41.3
Thhalv10013519m.g Eutrema salsugineum HOM05D006039 ORTHO05D006797 3.9e-71 273.1 460 40.9
Carub.0006s1111 Capsella rubella HOM05D006039 ORTHO05D006797 4.3e-70 269.6 465 40.4
AL6G23500 Arabidopsis lyrata HOM05D006039 ORTHO05D006797 1.2e-67 261.5 457 40.5
AT5G12930 Arabidopsis thaliana HOM05D006039 ORTHO05D006797 2.0e-67 260.8 360 44.7
Os09g0488600 Oryza sativa ssp. japonica HOM05D006039 ORTHO05D006797 1.3e-66 258.1 429 40.3
FAN16G1487 Fragaria x ananassa HOM05D006039 ORTHO05D006797 1.2e-64 251.5 356 45.5
Hund07543 Selenicereus undatus HOM05D006039 ORTHO05D006797 3.6e-64 250.0 287 49.5
BolC3t13172H Brassica oleracea HOM05D006039 ORTHO05D006797 1.8e-63 247.7 469 39.4
Ca_01279_v3 Cicer arietinum L. HOM05D006039 ORTHO05D006797 6.7e-63 245.7 347 47.3
BcaNung03603 Brassica carinata HOM05D006039 ORTHO05D006797 5.7e-62 242.7 459 38.6
BcaB01g05390 Brassica carinata HOM05D006389 ORTHO05D007863 7.4e-62 242.3 454 40.1
BraA03t09909Z Brassica rapa HOM05D006039 ORTHO05D006797 9.7e-62 241.9 468 39.1
A02p01580 Brassica napus HOM05D006039 ORTHO05D006797 3.7e-61 240.0 464 37.5
Potri.003G207500 Populus trichocarpa HOM05D006039 ORTHO05D006797 3.7e-61 240.0 428 40.7
BraA02t05138Z Brassica rapa HOM05D006039 ORTHO05D006797 6.9e-60 235.7 452 38.1
A03p05700 Brassica napus HOM05D006039 ORTHO05D006797 2.6e-59 233.8 468 38.7
HPP92_015767 Vanilla planifolia HOM05D006039 ORTHO05D006797 2.6e-59 233.8 441 38.3
C03p06660 Brassica napus HOM05D006039 ORTHO05D006797 1.3e-58 231.5 369 42.5
Sabra03G0153000 Salix brachista HOM05D006039 ORTHO05D006797 7.2e-57 225.7 452 40.0
TPR.G6898 Trifolium pratense HOM05D006039 ORTHO05D006797 2.7e-56 223.8 348 45.4
ATR0815G050 Amborella trichopoda HOM05D006039 ORTHO05D006797 2.0e-54 217.6 466 38.2
AUR62043683 Chenopodium quinoa HOM05D006039 ORTHO05D006797 7.4e-54 215.7 298 50.7
BcaB01g05389 Brassica carinata HOM05D006039 ORTHO05D006797 2.2e-53 214.2 369 41.2
FvH4_3g43290 Fragaria vesca HOM05D006039 ORTHO05D006797 5.3e-52 209.5 302 46.0
BcaNung01186 Brassica carinata HOM05D006039 ORTHO05D006797 1.3e-50 204.9 458 36.5
BolC2t06525H Brassica oleracea HOM05D006039 ORTHO05D006797 1.3e-50 204.9 458 36.5
Haze_23654 Corylus avellana HOM05D006039 ORTHO05D006797 2.1e-48 197.6 206 55.8
C02p05800 Brassica napus HOM05D006039 ORTHO05D006797 3.3e-46 190.3 463 34.6
Haze_23701 Corylus avellana HOM05D006039 ORTHO05D006797 2.2e-45 187.6 281 47.0
Haze_23655 Corylus avellana HOM05D006039 ORTHO05D006797 6.3e-45 186.0 308 43.8
Haze_23698 Corylus avellana HOM05D006039 ORTHO05D006797 1.8e-44 184.5 191 55.5
Zm00001eb101890 Zea mays HOM05D006039 ORTHO05D006797 4.1e-44 183.3 325 39.4
Haze_23656 Corylus avellana HOM05D006039 ORTHO05D006797 7.0e-44 182.6 334 39.5
Haze_23653 Corylus avellana HOM05D006039 ORTHO05D006797 9.1e-44 182.2 235 51.1
AUR62043578 Chenopodium quinoa HOM05D006039 ORTHO05D006797 1.0e-42 178.7 303 41.3
CDE06G0903 Ceratophyllum demersum HOM05D000288 ORTHO05D000173 1.7e-42 177.9 291 43.0
Actinidia39388 Actinidia chinensis HOM05D006039 ORTHO05D006797 1.2e-38 165.2 247 43.7
Cfa009719 Carpinus fangiana HOM05D006039 ORTHO05D006797 8.2e-37 159.1 223 46.2
Haze_23699 Corylus avellana HOM05D006039 ORTHO05D006797 8.5e-34 149.1 169 52.7
MELO3C003056.2 Cucumis melo HOM05D006039 ORTHO05D006797 3.2e-33 147.1 167 48.5
AUR62000084 Chenopodium quinoa HOM05D006039 ORTHO05D000067 5.5e-33 146.4 185 47.6
SHI30498 Sapria himalayana HOM05D006039 ORTHO05D000001 3.6e-32 143.7 488 29.1
Hund07487 Selenicereus undatus HOM05D000288 ORTHO05D006797 3.5e-27 127.1 149 53.7
Hund07491 Selenicereus undatus HOM05D006039 ORTHO05D006797 1.0e-26 125.6 168 49.4
TPR.G377 Trifolium pratense HOM05D006039 ORTHO05D006797 5.0e-26 123.2 142 50.7
AUR62014261 Chenopodium quinoa HOM05D006039 ORTHO05D006797 5.5e-25 119.8 222 38.7
Lsat_1_v5_gn_1_67161 Lactuca sativa HOM05D006039 ORTHO05D006797 1.5e-17 95.1 87 60.9
Pp3c20_22990 Physcomitrium patens HOM05D022188 ORTHO05D006797 1.2e-11 75.5 120 35.8
SEGI_29391 Sequoiadendron giganteum HOM05D022188 ORTHO05D006797 4.6e-11 73.6 247 27.1
Pp3c6_9630 Physcomitrium patens HOM05D026113 ORTHO05D006797 3.9e-10 70.5 95 44.2
Pp3c16_7650 Physcomitrium patens HOM05D026113 ORTHO05D006797 5.0e-10 70.1 101 40.6
Pp3c10_11042 Physcomitrium patens HOM05D026113 ORTHO05D006797 8.6e-10 69.3 116 37.9
Pp3c23_10180 Physcomitrium patens HOM05D022188 ORTHO05D006797 4.7e-08 63.5 118 32.2
Mapoly0060s0031 Marchantia polymorpha HOM05D022188 ORTHO05D006797 5.2e-07 60.1 95 33.7


User provided reference genes

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