Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR623G0382 Trochodendron aralioides HOM05D007000 ORTHO05D009020 0.0e+00 1595.5 854 100.0
Nn6g35052 Nelumbo nucifera HOM05D007000 ORTHO05D009020 0.0e+00 1140.6 789 74.0
GSVIVG01031401001 Vitis vinifera HOM05D007000 ORTHO05D009020 0.0e+00 1096.6 867 67.9
QL01p013748 Quercus lobata HOM05D007000 ORTHO05D009020 0.0e+00 1094.7 786 70.0
Prupe.6G118900 Prunus persica HOM05D007000 ORTHO05D009020 0.0e+00 1080.9 783 68.5
Potri.009G149100 Populus trichocarpa HOM05D007000 ORTHO05D009020 8.8e-311 1070.1 789 67.6
MD03G1134600 Malus domestica HOM05D007000 ORTHO05D009020 4.9e-309 1064.3 782 69.6
Sabra09G0117700 Salix brachista HOM05D007000 ORTHO05D009020 8.6e-306 1053.5 790 66.2
FAN21G0141 Fragaria x ananassa HOM05D007000 ORTHO05D009020 8.1e-304 1047.0 840 64.4
Dinv12525 Davidia involucrata HOM05D007000 ORTHO05D009020 1.1e-303 1046.6 843 65.4
FvH4_3g29910 Fragaria vesca HOM05D007000 ORTHO05D009020 1.1e-303 1046.6 785 66.9
FAN11G3012 Fragaria x ananassa HOM05D007000 ORTHO05D009020 1.1e-303 1046.6 785 66.9
Eucgr.J00424 Eucalyptus grandis HOM05D007000 ORTHO05D009020 2.3e-303 1045.4 780 67.2
Gohir.A07G107200 Gossypium hirsutum HOM05D007000 ORTHO05D009020 1.7e-301 1039.3 796 66.6
RcHm_v2.0_Chr5g0055251 Rosa chinensis HOM05D007000 ORTHO05D009020 4.6e-299 1031.2 783 66.2
Gorai.001G119400 Gossypium raimondii HOM05D007000 ORTHO05D009020 1.1e-297 1026.5 792 66.3
Gohir.A07G107100 Gossypium hirsutum HOM05D007000 ORTHO05D009020 1.6e-296 1022.7 844 63.3
PGR119G0747 Punica granatum HOM05D007000 ORTHO05D009020 4.0e-295 1018.1 790 65.8
CiPaw.14G103700 Carya illinoinensis HOM05D007000 ORTHO05D009020 5.2e-295 1017.7 865 62.1
FAN16G1383 Fragaria x ananassa HOM05D007000 ORTHO05D009020 1.3e-293 1013.1 852 61.6
Gohir.D07G111200 Gossypium hirsutum HOM05D007000 ORTHO05D009020 2.2e-293 1012.3 786 65.5
Gorai.001G119500 Gossypium raimondii HOM05D007000 ORTHO05D009020 2.2e-293 1012.3 786 65.6
TWI75G0014 Tripterygium wilfordii HOM05D007000 ORTHO05D009020 3.2e-292 1008.4 793 66.6
Duzib150G0107 Durio zibethinus HOM05D007000 ORTHO05D009020 4.2e-292 1008.1 824 63.8
ClCG02G021900 Citrullus lanatus HOM05D007000 ORTHO05D009020 1.0e-290 1003.4 819 64.5
Aqoxy1G00944 Aquilegia oxysepala HOM05D007000 ORTHO05D009020 1.2e-286 989.9 785 64.8
CANSAT54G2429 Cannabis sativa HOM05D007000 ORTHO05D009020 2.6e-286 988.8 814 64.1
Ciclev10027793m.g Citrus clementina HOM05D007000 ORTHO05D009020 1.0e-282 976.9 799 63.0
Sed0022610 Sechium edule HOM05D007000 ORTHO05D009020 1.3e-282 976.5 870 60.2
Migut.D02336 Erythranthe guttata HOM05D007000 ORTHO05D009020 1.6e-280 969.5 752 64.9
Manes.04G009000 Manihot esculenta HOM05D007000 ORTHO05D009020 3.6e-280 968.4 788 65.4
Oeu050179.1 Olea europaea HOM05D007000 ORTHO05D009020 1.4e-279 966.5 777 63.8
PSO339G5428 Papaver somniferum HOM05D007000 ORTHO05D009020 4.0e-279 964.9 778 63.4
MELO3C021453.2 Cucumis melo HOM05D007000 ORTHO05D009020 6.9e-279 964.1 873 60.4
Solyc11g066870.3 Solanum lycopersicum HOM05D007000 ORTHO05D009020 9.0e-279 963.8 733 64.8
CSS0049563 Camellia sinensis var. sinensis HOM05D007000 ORTHO05D009020 2.0e-278 962.6 550 79.5
PSO063G0097 Papaver somniferum HOM05D007000 ORTHO05D009020 2.6e-278 962.2 777 65.1
Sopen11g026580 Solanum pennellii HOM05D007000 ORTHO05D009020 5.8e-278 961.1 734 64.9
MSTRG.18732 Avicennia marina HOM05D007000 ORTHO05D009020 7.6e-278 960.7 715 66.2
CAN.G644.32 Capsicum annuum HOM05D007000 ORTHO05D009020 2.4e-276 955.7 711 66.5
PGSC0003DMG400026534 Solanum tuberosum HOM05D007000 ORTHO05D009020 4.2e-276 954.9 733 63.8
Cc01_g09830 Coffea canephora HOM05D007000 ORTHO05D009020 4.6e-275 951.4 730 65.1
Sc12g0004140 Simmondsia chinensis HOM05D007000 ORTHO05D009020 7.9e-275 950.7 695 69.5
AUR62038302 Chenopodium quinoa HOM05D007000 ORTHO05D009020 2.8e-272 942.2 804 58.3
Nitab4.5_0001453g0060 Nicotiana tabacum HOM05D007000 ORTHO05D009020 7.6e-270 934.1 726 64.2
CsaV3_6G014720 Cucumis sativus L. HOM05D007000 ORTHO05D009020 1.7e-269 932.9 859 59.8
CDE02G4201 Ceratophyllum demersum HOM05D007000 ORTHO05D009020 3.2e-268 928.7 709 69.1
EL10Ac9g21077 Beta vulgaris HOM05D007000 ORTHO05D009020 3.5e-267 925.2 779 63.8
Nitab4.5_0007303g0050 Nicotiana tabacum HOM05D007000 ORTHO05D009020 1.3e-266 923.3 745 62.8
COL.COLO4_19295 Corchorus olitorius HOM05D007000 ORTHO05D009020 3.9e-266 921.8 665 71.3
Lj3g0010220 Lotus japonicus HOM05D007000 ORTHO05D009020 1.3e-264 916.8 796 62.6
Lalb_Chr24g0395131 Lupinus albus HOM05D007000 ORTHO05D009020 1.6e-264 916.4 791 59.9
BraA10t43904Z Brassica rapa HOM05D007000 ORTHO05D009020 4.1e-263 911.8 789 62.6
Glyma.13G319300 Glycine max HOM05D007000 ORTHO05D009020 2.0e-262 909.4 804 60.0
AUR62023939 Chenopodium quinoa HOM05D007000 ORTHO05D009020 5.9e-262 907.9 541 74.7
BolC9t58265H Brassica oleracea HOM05D007000 ORTHO05D009020 1.3e-261 906.7 792 61.6
A10p18280 Brassica napus HOM05D007000 ORTHO05D009020 2.2e-261 906.0 798 62.8
Glyma.12G181600 Glycine max HOM05D007000 ORTHO05D009020 2.2e-261 906.0 830 59.4
Thhalv10012645m.g Eutrema salsugineum HOM05D007000 ORTHO05D009020 9.3e-260 900.6 828 58.3
FAN16G0383 Fragaria x ananassa HOM05D007000 ORTHO05D009020 9.3e-260 900.6 916 54.8
CARHR190940 Cardamine hirsuta HOM05D007000 ORTHO05D009020 2.7e-259 899.0 806 60.8
Sp6g22700 Schrenkiella parvula HOM05D007000 ORTHO05D009020 3.6e-259 898.7 828 57.2
AL6G33670 Arabidopsis lyrata HOM05D007000 ORTHO05D009020 1.0e-258 897.1 779 59.7
Carub.0006s2036 Capsella rubella HOM05D007000 ORTHO05D009020 1.5e-257 893.3 683 66.9
C09p53930 Brassica napus HOM05D007000 ORTHO05D009020 2.5e-257 892.5 818 59.7
AT5G22640 Arabidopsis thaliana HOM05D007000 ORTHO05D009020 9.7e-257 890.6 784 59.2
Aa31LG1G12980 Aethionema arabicum HOM05D007000 ORTHO05D009020 4.1e-255 885.2 794 60.1
Medtr2g084835 Medicago truncatula HOM05D007000 ORTHO05D009020 1.5e-254 883.2 779 58.4
ATR0820G103 Amborella trichopoda HOM05D007000 ORTHO05D009020 2.9e-253 879.0 783 61.3
BcaB08g36412 Brassica carinata HOM05D007000 ORTHO05D009020 5.5e-252 874.8 785 59.1
Phvul.005G127300 Phaseolus vulgaris HOM05D007000 ORTHO05D009020 6.7e-250 867.8 825 55.5
DCAR_012163 Daucus carota HOM05D007000 ORTHO05D009020 7.4e-249 864.4 717 63.2
Hund00783 Selenicereus undatus HOM05D007000 ORTHO05D009020 3.2e-244 849.0 786 58.3
VMungo1080G1560 Vigna mungo HOM05D007000 ORTHO05D009020 5.5e-244 848.2 827 55.9
Ah.01g004600 Amaranthus hybridus HOM05D007000 ORTHO05D009020 2.2e-240 836.3 793 56.4
unitig_747.g21960 Utricularia gibba HOM05D007000 ORTHO05D009020 1.4e-239 833.6 784 56.8
Ca_01679_v3 Cicer arietinum L. HOM05D007000 ORTHO05D009020 3.1e-239 832.4 779 58.7
ECA238G2375 Erigeron canadensis HOM05D007000 ORTHO05D009020 1.2e-238 830.5 791 56.0
arahy.Tifrunner.gnm1.ann1.K5NCJW Arachis hypogaea HOM05D007000 ORTHO05D009020 5.0e-237 825.1 876 56.3
arahy.Tifrunner.gnm1.ann1.0Z9K9L Arachis hypogaea HOM05D007000 ORTHO05D009020 3.2e-236 822.4 878 56.6
Lj1A221T47 Lonicera japonica HOM05D007000 ORTHO05D009020 3.3e-233 812.4 786 56.0
HanXRQChr14g0451961 Helianthus annuus HOM05D007000 ORTHO05D009020 6.3e-232 808.1 803 53.2
TPR.G32364 Trifolium pratense HOM05D007000 ORTHO05D009020 1.4e-231 807.0 854 54.2
SGA_v2.0_scaffold193G40708 Striga asiatica HOM05D007000 ORTHO05D009020 5.3e-231 805.1 811 56.0
Lsat_1_v5_gn_2_96400 Lactuca sativa HOM05D007000 ORTHO05D009020 1.5e-225 786.9 734 57.8
Thecc.09G291900 Theobroma cacao HOM05D007000 ORTHO05D009020 6.5e-221 771.5 618 65.7
Psat5g254800 Pisum sativum HOM05D007000 ORTHO05D009020 6.8e-218 761.5 857 50.2
Peaxi162Scf00789g00534 Petunia axillaris HOM05D007000 ORTHO05D009020 8.9e-186 654.8 511 63.2
Atru.chr3.3385 Acer truncatum HOM05D007000 ORTHO05D009020 1.1e-172 611.3 495 67.7
Gohir.D07G111100 Gossypium hirsutum HOM05D007000 ORTHO05D009020 3.6e-171 606.3 588 57.5
Actinidia37100 Actinidia chinensis HOM05D007000 ORTHO05D009020 7.6e-169 598.6 799 48.2
HPP92_011511 Vanilla planifolia HOM05D007000 ORTHO05D009020 3.2e-159 566.6 343 74.9
Haze_23451 Corylus avellana HOM05D007000 ORTHO05D009020 9.3e-159 565.1 410 67.3
Pp3c14_2260 Physcomitrium patens HOM05D007000 ORTHO05D009020 1.3e-155 554.7 458 58.1
Mapoly0021s0145 Marchantia polymorpha HOM05D007000 ORTHO05D009020 5.3e-154 549.3 555 50.6
ScUNg0001440 Simmondsia chinensis HOM05D007000 ORTHO05D009020 7.6e-145 518.8 401 68.1
SEGI_23936 Sequoiadendron giganteum HOM05D007000 ORTHO05D009020 2.5e-140 503.8 458 53.5
HPP92_011563 Vanilla planifolia HOM05D007000 ORTHO05D009020 1.0e-128 465.3 264 78.4
HPP92_011520 Vanilla planifolia HOM05D007000 ORTHO05D009020 2.3e-117 427.6 395 55.2
AagrBONN_evm.TU.Sc2ySwM_344.1665 Anthoceros agrestis HOM05D007000 ORTHO05D009020 1.8e-109 401.4 346 55.5
MD11G1157100 Malus domestica HOM05D007000 ORTHO05D009020 8.3e-107 392.5 526 51.0
Atru.chr3.3384 Acer truncatum HOM05D007000 ORTHO05D009020 6.6e-96 356.3 188 83.5
Oeu050178.1 Olea europaea HOM05D007000 ORTHO05D009020 5.8e-92 343.2 428 49.8
Cpa.g.sc47.64 Carica papaya HOM05D007000 ORTHO05D009020 4.9e-91 340.1 325 52.9
Peaxi162Scf00789g00535 Petunia axillaris HOM05D007000 ORTHO05D009020 3.9e-88 330.5 194 78.4
BcaC04g19594 Brassica carinata HOM05D007000 ORTHO05D009020 9.2e-74 282.7 164 73.8
Cpa.g.sc47.63 Carica papaya HOM05D007000 ORTHO05D009020 8.7e-64 249.6 313 51.1
TWI75G1888 Tripterygium wilfordii HOM05D007893 ORTHO05D010042 3.4e-36 157.9 117 65.0
Actinidia35447 Actinidia chinensis HOM05D007000 ORTHO05D009020 1.5e-31 142.5 79 78.5
CBR_g22485 Chara braunii HOM05D000019 ORTHO05D000048 1.6e-30 139.0 344 29.1
HPP92_011562 Vanilla planifolia HOM05D007000 ORTHO05D009020 2.4e-21 108.6 164 39.6
Potri.004G188432 Populus trichocarpa HOM05D007000 ORTHO05D030830 3.1e-21 108.2 102 58.8
Aqoxy5G03114 Aquilegia oxysepala HOM05D003707 ORTHO05D004309 1.4e-18 99.4 77 59.7
Actinidia27040 Actinidia chinensis HOM05D007000 ORTHO05D030830 3.6e-17 94.7 287 40.4
SEGI_03022 Sequoiadendron giganteum HOM05D007000 ORTHO05D009020 6.7e-16 90.5 72 51.4
HPP92_011512 Vanilla planifolia HOM05D007000 ORTHO05D428354 5.5e-10 70.9 236 33.5
Oeu040143.1 Olea europaea HOM05D007000 ORTHO05D288686 8.2e-06 57.0 41 63.4


User provided reference genes

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