Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR623G0376 Trochodendron aralioides HOM05D006485 ORTHO05D006108 2.3e-84 317.0 438 100.0
Lj3C1005T3 Lonicera japonica HOM05D011389 ORTHO05D006108 9.1e-17 92.4 94 56.4
PSO063G6051 Papaver somniferum HOM05D006485 ORTHO05D006108 2.0e-16 91.3 103 52.4
FAN14G0187 Fragaria x ananassa HOM05D006485 ORTHO05D006108 2.9e-15 87.4 123 43.9
PGR004G2529 Punica granatum HOM05D006485 ORTHO05D006108 2.9e-15 87.4 113 46.0
Eucgr.A01582 Eucalyptus grandis HOM05D006485 ORTHO05D006108 5.0e-15 86.7 100 55.0
FAN09G1969 Fragaria x ananassa HOM05D006485 ORTHO05D006108 6.5e-15 86.3 123 43.1
FAN05G3442 Fragaria x ananassa HOM05D006485 ORTHO05D006108 8.5e-15 85.9 118 45.8
PSO339G3752 Papaver somniferum HOM05D006485 ORTHO05D006108 8.5e-15 85.9 106 50.0
Aqoxy1G01006 Aquilegia oxysepala HOM05D006485 ORTHO05D006108 1.4e-14 85.1 105 46.7
FAN02G3096 Fragaria x ananassa HOM05D006485 ORTHO05D006108 2.5e-14 84.3 105 44.8
FAN09G4412 Fragaria x ananassa HOM05D006485 ORTHO05D006108 3.2e-14 84.0 123 43.1
TWI53G1251 Tripterygium wilfordii HOM05D006485 ORTHO05D006108 3.2e-14 84.0 98 46.9
Carub.0004s1846 Capsella rubella HOM05D006485 ORTHO05D006108 7.2e-14 82.8 88 55.7
Thhalv10017525m.g Eutrema salsugineum HOM05D006485 ORTHO05D006108 1.6e-13 81.6 93 54.8
Potri.015G060600 Populus trichocarpa HOM05D006485 ORTHO05D006108 1.6e-13 81.6 107 43.9
MD09G1267600 Malus domestica HOM05D006485 ORTHO05D006108 2.1e-13 81.3 103 51.5
FAN05G4746 Fragaria x ananassa HOM05D006485 ORTHO05D006108 2.7e-13 80.9 118 44.1
Sc02g0001270 Simmondsia chinensis HOM05D006485 ORTHO05D006108 2.7e-13 80.9 107 43.9
EL10Ac7g16753 Beta vulgaris HOM05D006485 ORTHO05D006108 3.6e-13 80.5 99 48.5
Aa31LG5G21840 Aethionema arabicum HOM05D006485 ORTHO05D006108 4.7e-13 80.1 83 57.8
AT2G36640 Arabidopsis thaliana HOM05D006485 ORTHO05D006108 4.7e-13 80.1 93 53.8
AL4G32820 Arabidopsis lyrata HOM05D006485 ORTHO05D006108 1.0e-12 79.0 93 54.8
Hund12313 Selenicereus undatus HOM05D006485 ORTHO05D006108 1.0e-12 79.0 105 48.6
CSS0031113 Camellia sinensis var. sinensis HOM05D006485 ORTHO05D006108 2.3e-12 77.8 136 41.9
Sp4g18920 Schrenkiella parvula HOM05D006485 ORTHO05D006108 3.0e-12 77.4 86 52.3
RcHm_v2.0_Chr3g0471651 Rosa chinensis HOM05D006485 ORTHO05D006108 3.9e-12 77.0 132 42.4
Ah.15g091240 Amaranthus hybridus HOM05D011389 ORTHO05D006108 4.4e-11 73.6 115 42.6
Peaxi162Scf00500g00067 Petunia axillaris HOM05D006485 ORTHO05D006108 4.4e-11 73.6 89 48.3
Prupe.7G121500 Prunus persica HOM05D006485 ORTHO05D006108 5.7e-11 73.2 114 44.7
A05p09230 Brassica napus HOM05D006485 ORTHO05D006108 7.4e-11 72.8 79 55.7
Nn2g13931 Nelumbo nucifera HOM05D006485 ORTHO05D006108 7.4e-11 72.8 106 48.1
COL.COLO4_22277 Corchorus olitorius HOM05D006485 ORTHO05D006108 4.8e-10 70.1 64 60.9
FvH4_6g17400 Fragaria vesca HOM05D006485 ORTHO05D006108 4.8e-10 70.1 115 40.0
Nitab4.5_0000680g0110 Nicotiana tabacum HOM05D006485 ORTHO05D006108 8.2e-10 69.3 84 48.8
SalBow5G2944 Salvia bowleyana HOM05D006485 ORTHO05D006108 1.4e-09 68.6 118 46.6
Atru.chr8.1691 Acer truncatum HOM05D006485 ORTHO05D006108 3.1e-09 67.4 104 40.4
Nitab4.5_0006314g0010 Nicotiana tabacum HOM05D006485 ORTHO05D006108 4.1e-09 67.0 88 46.6
Haze_19505 Corylus avellana HOM05D006485 ORTHO05D006108 5.3e-09 66.6 90 46.7
Thhalv10010945m.g Eutrema salsugineum HOM05D006485 ORTHO05D006108 5.3e-09 66.6 101 45.5
vmacro08809 Vaccinium macrocarpon HOM05D011389 ORTHO05D006108 7.0e-09 66.2 80 47.5
Carub.0005s1954 Capsella rubella HOM05D006485 ORTHO05D006108 9.1e-09 65.9 94 45.7
Lj3A1005G41 Lonicera japonica HOM05D011389 ORTHO05D006108 1.2e-08 65.5 64 57.8
Manes.08G018000 Manihot esculenta HOM05D006485 ORTHO05D006108 1.2e-08 65.5 105 43.8
SGA_v2.0_scaffold118G32589 Striga asiatica HOM05D011389 ORTHO05D006108 1.6e-08 65.1 118 36.4
AT3G53040 Arabidopsis thaliana HOM05D006485 ORTHO05D006108 2.0e-08 64.7 83 45.8
Cfa016504 Carpinus fangiana HOM05D006485 ORTHO05D006108 2.0e-08 64.7 55 56.4
Migut.L01738 Erythranthe guttata HOM05D013674 ORTHO05D006108 2.0e-08 64.7 122 38.5
CSS0004621 Camellia sinensis var. sinensis HOM05D006485 ORTHO05D006108 3.5e-08 63.9 79 51.9
Rhsim04G0137200 Rhododendron simsii HOM05D000023 ORTHO05D000014 3.5e-08 63.9 94 46.8
Nn6g35112 Nelumbo nucifera HOM05D006485 ORTHO05D006108 7.7e-08 62.8 109 42.2
Actinidia32467 Actinidia chinensis HOM05D011389 ORTHO05D006108 1.0e-07 62.4 70 50.0
CARHR130920 Cardamine hirsuta HOM05D006485 ORTHO05D006108 1.0e-07 62.4 71 52.1
Ca_11604_v3 Cicer arietinum L. HOM05D013674 ORTHO05D006108 1.7e-07 61.6 60 56.7
Ca_12340_v3 Cicer arietinum L. HOM05D013674 ORTHO05D006108 1.7e-07 61.6 60 56.7
Sp5g09280 Schrenkiella parvula HOM05D006485 ORTHO05D006108 2.9e-07 60.8 81 48.1
TPR.G5694 Trifolium pratense HOM05D013674 ORTHO05D006108 2.9e-07 60.8 63 55.6
CANSAT80G1413 Cannabis sativa HOM05D006485 ORTHO05D006108 3.8e-07 60.5 57 57.9
AUR62037914 Chenopodium quinoa HOM05D006485 ORTHO05D006108 3.8e-07 60.5 91 45.1
MELO3C009418.2 Cucumis melo HOM05D006485 ORTHO05D006108 3.8e-07 60.5 95 44.2
Glyma.10G064400 Glycine max HOM05D013674 ORTHO05D006108 3.8e-07 60.5 73 50.7
Medtr1g061730 Medicago truncatula HOM05D013674 ORTHO05D006108 3.8e-07 60.5 62 56.5
Psat6g077640 Pisum sativum HOM05D013674 ORTHO05D006108 3.8e-07 60.5 47 66.0
GSVIVG01033739001 Vitis vinifera HOM05D006485 ORTHO05D006108 3.8e-07 60.5 47 63.8
THA.LOC104827498 Tarenaya hassleriana HOM05D006485 ORTHO05D006108 8.5e-07 59.3 107 41.1
AUR62040165 Chenopodium quinoa HOM05D006485 ORTHO05D006108 1.1e-06 58.9 98 40.8
AL5G33870 Arabidopsis lyrata HOM05D006485 ORTHO05D006108 2.5e-06 57.8 82 46.3
Cfa016502 Carpinus fangiana HOM05D006485 ORTHO05D006108 2.5e-06 57.8 55 52.7
CsaV3_3G036640 Cucumis sativus L. HOM05D006485 ORTHO05D006108 2.5e-06 57.8 85 48.2
Gohir.A04G067600 Gossypium hirsutum HOM05D006485 ORTHO05D006108 2.5e-06 57.8 61 54.1
Ciclev10013512m.g Citrus clementina HOM05D006485 ORTHO05D006108 3.2e-06 57.4 89 46.1
PGSC0003DMG400002731 Solanum tuberosum HOM05D006485 ORTHO05D006108 3.2e-06 57.4 49 63.3
CiPaw.10G003000 Carya illinoinensis HOM05D006485 ORTHO05D006108 4.2e-06 57.0 48 62.5
Gohir.D04G106200 Gossypium hirsutum HOM05D006485 ORTHO05D006108 4.2e-06 57.0 61 54.1
Sopen11g019160 Solanum pennellii HOM05D011389 ORTHO05D006108 5.5e-06 56.6 118 35.6
BcaB02g08540 Brassica carinata HOM05D006485 ORTHO05D006108 7.2e-06 56.2 92 39.1
Lalb_Chr06g0172031 Lupinus albus HOM05D013674 ORTHO05D006108 7.2e-06 56.2 60 58.3
Peaxi162Scf00078g00310 Petunia axillaris HOM05D011389 ORTHO05D006108 7.2e-06 56.2 114 35.1
Solyc11g042800.2 Solanum lycopersicum HOM05D011389 ORTHO05D006108 9.4e-06 55.8 118 34.7


User provided reference genes

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