Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR623G0360 Trochodendron aralioides HOM05D007144 ORTHO05D008709 1.6e-29 133.3 154 100.0
TAR369G0480 Trochodendron aralioides HOM05D007144 ORTHO05D008709 2.0e-19 99.8 154 84.4
Haze_23224 Corylus avellana HOM05D007144 ORTHO05D008709 1.2e-16 90.5 65 73.8
CSS0000717 Camellia sinensis var. sinensis HOM05D007144 ORTHO05D008709 1.6e-16 90.1 65 73.8
Haze_03594 Corylus avellana HOM05D007144 ORTHO05D008709 3.5e-16 89.0 65 72.3
Nitab4.5_0003882g0010 Nicotiana tabacum HOM05D007144 ORTHO05D008709 3.5e-16 89.0 65 72.3
Cfa010657 Carpinus fangiana HOM05D007144 ORTHO05D008709 6.0e-16 88.2 65 72.3
Solyc04g008580.3 Solanum lycopersicum HOM05D007144 ORTHO05D008709 6.0e-16 88.2 65 69.2
Duzib150G1568 Durio zibethinus HOM05D007144 ORTHO05D008709 1.0e-15 87.4 61 73.8
Actinidia06960 Actinidia chinensis HOM05D007144 ORTHO05D008709 1.3e-15 87.0 56 76.8
CiPaw.13G151300 Carya illinoinensis HOM05D007144 ORTHO05D008709 1.7e-15 86.7 65 70.8
Sopen04g003740 Solanum pennellii HOM05D007144 ORTHO05D008709 1.7e-15 86.7 65 67.7
PGSC0003DMG400031376 Solanum tuberosum HOM05D007144 ORTHO05D008709 1.7e-15 86.7 65 67.7
Nitab4.5_0000129g0400 Nicotiana tabacum HOM05D007144 ORTHO05D008709 2.3e-15 86.3 65 70.8
Peaxi162Scf00329g00929 Petunia axillaris HOM05D007144 ORTHO05D008709 2.3e-15 86.3 60 71.7
SalBow5G2023 Salvia bowleyana HOM05D007144 ORTHO05D008709 3.0e-15 85.9 65 66.2
Cpa.g.sc482.3 Carica papaya HOM05D007144 ORTHO05D008709 3.9e-15 85.5 61 72.1
Atru.chr3.2764 Acer truncatum HOM05D007144 ORTHO05D008709 5.1e-15 85.1 62 74.2
SalBow5G2895 Salvia bowleyana HOM05D007144 ORTHO05D008709 6.6e-15 84.7 65 64.6
CAN.G880.2 Capsicum annuum HOM05D007144 ORTHO05D008709 8.7e-15 84.3 53 77.4
Dinv36172 Davidia involucrata HOM05D007144 ORTHO05D008709 8.7e-15 84.3 70 65.7
Aqoxy1G00362 Aquilegia oxysepala HOM05D007144 ORTHO05D008709 1.5e-14 83.6 65 67.7
Lj6g0012120 Lotus japonicus HOM05D007144 ORTHO05D008709 1.5e-14 83.6 65 67.7
Rhsim13G0210700 Rhododendron simsii HOM05D007144 ORTHO05D008709 1.5e-14 83.6 63 73.0
COL.COLO4_35678 Corchorus olitorius HOM05D007144 ORTHO05D008709 1.9e-14 83.2 63 69.8
Cc11_g02820 Coffea canephora HOM05D007144 ORTHO05D008709 2.5e-14 82.8 66 72.7
Lsat_1_v5_gn_2_34061 Lactuca sativa HOM05D007144 ORTHO05D008709 3.3e-14 82.4 65 66.2
Ca_03986_v3 Cicer arietinum L. HOM05D007144 ORTHO05D008709 5.6e-14 81.6 62 67.7
Ca_12164_v3 Cicer arietinum L. HOM05D007144 ORTHO05D008709 9.6e-14 80.9 65 63.1
SGA_v2.0_scaffold43G16444 Striga asiatica HOM05D007144 ORTHO05D008709 9.6e-14 80.9 66 66.7
Thecc.09G249300 Theobroma cacao HOM05D007144 ORTHO05D008709 9.6e-14 80.9 65 69.2
Duzib168G0692 Durio zibethinus HOM05D007144 ORTHO05D008709 1.6e-13 80.1 65 70.8
MBI13_g27793_MAGBIO Magnolia biondii HOM05D007144 ORTHO05D008709 1.6e-13 80.1 62 64.5
TPR.G13466 Trifolium pratense HOM05D007144 ORTHO05D008709 1.6e-13 80.1 65 61.5
Glyma.08G150200 Glycine max HOM05D007144 ORTHO05D008709 2.1e-13 79.7 65 63.1
Gohir.D07G124200 Gossypium hirsutum HOM05D007144 ORTHO05D008709 2.1e-13 79.7 63 65.1
Gorai.001G134000 Gossypium raimondii HOM05D007144 ORTHO05D008709 2.1e-13 79.7 63 65.1
Gohir.A07G120000 Gossypium hirsutum HOM05D007144 ORTHO05D008709 2.8e-13 79.3 63 65.1
EL10Ac4g10148 Beta vulgaris HOM05D007144 ORTHO05D008709 3.6e-13 79.0 61 70.5
Hma1.2p1_0842F.1_g227150 Hydrangea macrophylla HOM05D007144 ORTHO05D008709 3.6e-13 79.0 59 72.9
Potri.009G070700 Populus trichocarpa HOM05D007144 ORTHO05D008709 3.6e-13 79.0 65 64.6
Medtr3g088410 Medicago truncatula HOM05D007144 ORTHO05D008709 4.8e-13 78.6 65 61.5
arahy.Tifrunner.gnm1.ann1.FNNB0Q Arachis hypogaea HOM05D007144 ORTHO05D008709 8.1e-13 77.8 65 64.6
arahy.Tifrunner.gnm1.ann1.J3HRR4 Arachis hypogaea HOM05D007144 ORTHO05D008709 8.1e-13 77.8 65 64.6
Manes.01G179700 Manihot esculenta HOM05D007144 ORTHO05D008709 1.1e-12 77.4 64 67.2
Potri.001G276100 Populus trichocarpa HOM05D007144 ORTHO05D008709 1.1e-12 77.4 63 69.8
Sed0028076 Sechium edule HOM05D007144 ORTHO05D008709 1.1e-12 77.4 63 66.7
Prupe.4G267400 Prunus persica HOM05D007144 ORTHO05D008709 1.4e-12 77.0 63 65.1
HanXRQChr17g0535301 Helianthus annuus HOM05D007144 ORTHO05D008709 2.4e-12 76.3 63 63.5
Zm00001eb329760 Zea mays HOM05D007144 ORTHO05D008709 2.4e-12 76.3 65 58.5
Manes.02G140201 Manihot esculenta HOM05D007144 ORTHO05D008709 3.1e-12 75.9 65 63.1
Ciclev10017489m.g Citrus clementina HOM05D007144 ORTHO05D008709 5.3e-12 75.1 54 72.2
arahy.Tifrunner.gnm1.ann1.A9WCXI Arachis hypogaea HOM05D007144 ORTHO05D008709 9.0e-12 74.3 65 61.5
AUR62006537 Chenopodium quinoa HOM05D007144 ORTHO05D008709 1.2e-11 73.9 65 61.5
Sc06g0004670 Simmondsia chinensis HOM05D007144 ORTHO05D008709 1.5e-11 73.6 65 60.0
HPP92_013978 Vanilla planifolia HOM05D007144 ORTHO05D008709 1.5e-11 73.6 65 61.5
Ah.06g194530 Amaranthus hybridus HOM05D007144 ORTHO05D008709 2.0e-11 73.2 47 78.7
Thhalv10014957m.g Eutrema salsugineum HOM05D007144 ORTHO05D008709 2.0e-11 73.2 50 76.0
FvH4_1g25870 Fragaria vesca HOM05D007144 ORTHO05D008709 2.0e-11 73.2 65 61.5
FAN19G1536 Fragaria x ananassa HOM05D007144 ORTHO05D008709 2.0e-11 73.2 65 61.5
FAN23G1846 Fragaria x ananassa HOM05D007144 ORTHO05D008709 2.0e-11 73.2 65 61.5
FAN26G3363 Fragaria x ananassa HOM05D007144 ORTHO05D008709 2.0e-11 73.2 65 61.5
Hund07439 Selenicereus undatus HOM05D007144 ORTHO05D008709 2.0e-11 73.2 65 63.1
Sp6g31320 Schrenkiella parvula HOM05D007144 ORTHO05D008709 2.6e-11 72.8 50 76.0
Aa31LG3G14910 Aethionema arabicum HOM05D007144 ORTHO05D008709 3.4e-11 72.4 50 76.0
AL6G23120 Arabidopsis lyrata HOM05D007144 ORTHO05D008709 3.4e-11 72.4 52 71.2
Migut.O00557 Erythranthe guttata HOM05D007144 ORTHO05D008709 3.4e-11 72.4 67 59.7
CARHR200790 Cardamine hirsuta HOM05D007144 ORTHO05D008709 4.5e-11 72.0 48 77.1
DCAR_023846 Daucus carota HOM05D007144 ORTHO05D008709 4.5e-11 72.0 54 63.0
THA.LOC104799122 Tarenaya hassleriana HOM05D007144 ORTHO05D008709 5.8e-11 71.6 52 69.2
Sabra09G0053500 Salix brachista HOM05D007144 ORTHO05D008709 7.6e-11 71.2 65 58.5
ATR0745G069 Amborella trichopoda HOM05D007144 ORTHO05D008709 1.3e-10 70.5 52 69.2
Carub.0006s1083 Capsella rubella HOM05D007144 ORTHO05D008709 1.3e-10 70.5 50 70.0
MD11G1186200 Malus domestica HOM05D007144 ORTHO05D008709 2.2e-10 69.7 47 74.5
RcHm_v2.0_Chr3g0485011 Rosa chinensis HOM05D007144 ORTHO05D008709 2.9e-10 69.3 45 73.3
Psat1g051560 Pisum sativum HOM05D007144 ORTHO05D008709 3.8e-10 68.9 61 59.0
CDE04G3392 Ceratophyllum demersum HOM05D000144 ORTHO05D007336 4.9e-10 68.6 65 56.9
ECA236G5047 Erigeron canadensis HOM05D007144 ORTHO05D008709 4.9e-10 68.6 65 60.0
TWI23G1223 Tripterygium wilfordii HOM05D007144 ORTHO05D008709 4.9e-10 68.6 60 66.7
CANSAT54G2482 Cannabis sativa HOM05D007144 ORTHO05D008709 6.4e-10 68.2 65 58.5
A10p25500 Brassica napus HOM05D007144 ORTHO05D008709 8.4e-10 67.8 50 70.0
C09p64580 Brassica napus HOM05D007144 ORTHO05D008709 8.4e-10 67.8 50 70.0
BolC9t59291H Brassica oleracea HOM05D007144 ORTHO05D008709 8.4e-10 67.8 50 70.0
BraA10t44614Z Brassica rapa HOM05D007144 ORTHO05D008709 8.4e-10 67.8 50 70.0
Eucgr.B03730 Eucalyptus grandis HOM05D007144 ORTHO05D008709 8.4e-10 67.8 63 58.7
unitig_749.g14354 Utricularia gibba HOM05D007144 ORTHO05D008709 1.1e-09 67.4 81 49.4
AUR62000186 Chenopodium quinoa HOM05D007144 ORTHO05D008709 1.9e-09 66.6 65 56.9
AT5G12320 Arabidopsis thaliana HOM05D007144 ORTHO05D008709 2.4e-09 66.2 48 70.8
MELO3C014563.2 Cucumis melo HOM05D007144 ORTHO05D008709 2.4e-09 66.2 65 53.8
MD03G1167000 Malus domestica HOM05D007144 ORTHO05D008709 3.2e-09 65.9 47 72.3
CsaV3_6G039020 Cucumis sativus L. HOM05D007144 ORTHO05D008709 9.3e-09 64.3 65 52.3
Nn7g36693 Nelumbo nucifera HOM05D007144 ORTHO05D008709 9.3e-09 64.3 56 62.5
QL01p017309 Quercus lobata HOM05D007144 ORTHO05D008709 1.6e-08 63.5 51 68.6
Atru.chr4.1901 Acer truncatum HOM05D007144 ORTHO05D008709 2.1e-08 63.2 62 61.3
Lalb_Chr18g0054451 Lupinus albus HOM05D007144 ORTHO05D008709 2.1e-08 63.2 43 74.4
GSVIVG01037268001 Vitis vinifera HOM05D007144 ORTHO05D008709 2.7e-08 62.8 52 67.3
Mapoly0026s0092 Marchantia polymorpha HOM05D007144 ORTHO05D008709 3.0e-07 59.3 49 55.1
PGR102G1924 Punica granatum HOM05D007144 ORTHO05D008709 6.7e-07 58.2 57 50.9
Lj1A285T18 Lonicera japonica HOM05D007144 ORTHO05D008709 4.3e-06 55.5 32 84.4


User provided reference genes

Program Settings