Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR623G0341 Trochodendron aralioides HOM05D007204 ORTHO05D008593 6.9e-102 374.0 195 100.0
Nn2g10986 Nelumbo nucifera HOM05D007204 ORTHO05D008593 1.2e-58 230.3 191 65.4
GSVIVG01024663001 Vitis vinifera HOM05D007204 ORTHO05D008593 1.4e-57 226.9 190 64.2
Ciclev10029273m.g Citrus clementina HOM05D007204 ORTHO05D008593 4.4e-56 221.9 190 59.5
TWI31G1133 Tripterygium wilfordii HOM05D007204 ORTHO05D008593 1.3e-55 220.3 188 61.7
Dinv09663 Davidia involucrata HOM05D007204 ORTHO05D008593 3.7e-55 218.8 191 64.9
QL01p040026 Quercus lobata HOM05D007204 ORTHO05D008593 7.3e-51 204.5 192 61.5
PGR102G0940 Punica granatum HOM05D007204 ORTHO05D008593 2.8e-50 202.6 192 57.3
RcHm_v2.0_Chr5g0071301 Rosa chinensis HOM05D007204 ORTHO05D008593 2.8e-50 202.6 201 56.7
Actinidia32616 Actinidia chinensis HOM05D007204 ORTHO05D008593 3.6e-50 202.2 195 57.4
Duzib168G0028 Durio zibethinus HOM05D007204 ORTHO05D008593 1.4e-49 200.3 187 57.8
Atru.chr3.4133 Acer truncatum HOM05D007204 ORTHO05D008593 3.1e-49 199.1 191 59.2
CiPaw.14G055100 Carya illinoinensis HOM05D007204 ORTHO05D008593 4.0e-49 198.7 193 54.9
PSO339G1295 Papaver somniferum HOM05D007204 ORTHO05D008593 8.9e-49 197.6 188 61.7
Prupe.6G050500 Prunus persica HOM05D007204 ORTHO05D008593 4.4e-48 195.3 205 53.2
Thecc.09G355900 Theobroma cacao HOM05D007204 ORTHO05D008593 9.9e-48 194.1 192 56.2
Potri.001G281500 Populus trichocarpa HOM05D007204 ORTHO05D008593 2.9e-47 192.6 189 56.6
VMungo0540G1924 Vigna mungo HOM05D007204 ORTHO05D008593 2.9e-47 192.6 189 55.6
FAN16G2350 Fragaria x ananassa HOM05D007204 ORTHO05D008593 1.4e-46 190.3 201 53.7
Phvul.006G073000 Phaseolus vulgaris HOM05D007204 ORTHO05D008593 1.4e-46 190.3 197 54.3
MD11G1063300 Malus domestica HOM05D007204 ORTHO05D008593 2.4e-46 189.5 207 51.2
PSO801G0770 Papaver somniferum HOM05D007204 ORTHO05D008593 2.4e-46 189.5 188 59.0
COL.COLO4_11129 Corchorus olitorius HOM05D007204 ORTHO05D008593 4.1e-46 188.7 181 54.7
FAN11G3207 Fragaria x ananassa HOM05D007204 ORTHO05D008593 4.1e-46 188.7 201 54.7
FvH4_3g39530 Fragaria vesca HOM05D007204 ORTHO05D008593 7.1e-46 188.0 201 54.2
Sed0020276 Sechium edule HOM05D007204 ORTHO05D008593 3.5e-45 185.7 189 53.4
Gohir.D03G142400 Gossypium hirsutum HOM05D007204 ORTHO05D008593 4.6e-45 185.3 193 53.4
Gorai.003G149500 Gossypium raimondii HOM05D007204 ORTHO05D008593 6.0e-45 184.9 193 53.4
FAN25G1877 Fragaria x ananassa HOM05D007204 ORTHO05D008593 7.8e-45 184.5 201 52.7
Lj6g0005890 Lotus japonicus HOM05D007204 ORTHO05D008593 1.0e-44 184.1 185 55.1
Nitab4.5_0007880g0040 Nicotiana tabacum HOM05D007204 ORTHO05D008593 3.9e-44 182.2 189 54.0
MBI03_g33621_MAGBIO Magnolia biondii HOM05D007204 ORTHO05D008593 1.5e-43 180.3 261 44.1
TPR.G32886 Trifolium pratense HOM05D007204 ORTHO05D008593 4.3e-43 178.7 191 52.9
HanXRQChr08g0229231 Helianthus annuus HOM05D007204 ORTHO05D008593 9.5e-43 177.6 187 54.0
Psat5g153840 Pisum sativum HOM05D007204 ORTHO05D008593 9.5e-43 177.6 195 51.3
Cc01_g14730 Coffea canephora HOM05D007204 ORTHO05D008593 2.1e-42 176.4 186 52.2
Rhsim13G0065200 Rhododendron simsii HOM05D007204 ORTHO05D008593 1.1e-41 174.1 256 43.4
MELO3C026086.2 Cucumis melo HOM05D007204 ORTHO05D008593 2.4e-41 172.9 186 52.2
Manes.17G034600 Manihot esculenta HOM05D007204 ORTHO05D008593 4.0e-41 172.2 184 54.3
AL1G17180 Arabidopsis lyrata HOM05D007204 ORTHO05D008593 5.2e-41 171.8 192 48.4
Carub.0001s0635 Capsella rubella HOM05D007204 ORTHO05D008593 6.8e-41 171.4 187 48.7
CARHR006750 Cardamine hirsuta HOM05D007204 ORTHO05D008593 2.0e-40 169.9 187 49.7
PGSC0003DMG400030457 Solanum tuberosum HOM05D007204 ORTHO05D008593 5.8e-40 168.3 187 52.9
Hma1.2p1_0841F.1_g226930 Hydrangea macrophylla HOM05D007204 ORTHO05D008593 7.6e-40 167.9 133 66.9
THA.LOC104800761 Tarenaya hassleriana HOM05D007204 ORTHO05D008593 6.4e-39 164.9 189 48.1
Sc21g0005220 Simmondsia chinensis HOM05D007204 ORTHO05D008593 8.4e-39 164.5 178 51.1
arahy.Tifrunner.gnm1.ann1.QCA2Y7 Arachis hypogaea HOM05D007204 ORTHO05D008593 2.4e-38 162.9 208 45.7
CsaV3_1G015330 Cucumis sativus L. HOM05D007204 ORTHO05D008593 2.4e-38 162.9 187 49.2
Migut.N00766 Erythranthe guttata HOM05D007204 ORTHO05D008593 2.4e-38 162.9 188 48.4
Aqoxy2G00798 Aquilegia oxysepala HOM05D007204 ORTHO05D008593 4.1e-38 162.2 133 61.7
AT1G07060 Arabidopsis thaliana HOM05D007204 ORTHO05D008593 5.4e-38 161.8 192 46.9
arahy.Tifrunner.gnm1.ann1.IVNQ32 Arachis hypogaea HOM05D007204 ORTHO05D008593 7.1e-38 161.4 219 43.8
Eucgr.B03990 Eucalyptus grandis HOM05D007204 ORTHO05D008593 1.6e-37 160.2 187 49.2
Sp1g05780 Schrenkiella parvula HOM05D007204 ORTHO05D008593 1.6e-37 160.2 187 49.2
BcaC05g24670 Brassica carinata HOM05D007204 ORTHO05D008593 2.7e-37 159.5 187 48.1
C05p05140 Brassica napus HOM05D007204 ORTHO05D008593 6.0e-37 158.3 187 47.6
A10p05600 Brassica napus HOM05D007204 ORTHO05D008593 7.8e-37 157.9 185 48.1
BcaNung06767 Brassica carinata HOM05D007204 ORTHO05D008593 1.0e-36 157.5 187 47.1
Aa31LG1G8110 Aethionema arabicum HOM05D007204 ORTHO05D008593 3.9e-36 155.6 188 47.9
Peaxi162Scf00390g00079 Petunia axillaris HOM05D007204 ORTHO05D008593 4.3e-35 152.1 200 47.0
Gohir.A03G026100 Gossypium hirsutum HOM05D007204 ORTHO05D008593 1.2e-34 150.6 133 60.9
CANSAT54G2573 Cannabis sativa HOM05D007204 ORTHO05D008593 2.8e-34 149.4 155 53.5
SGA_v2.0_scaffold146G36125 Striga asiatica HOM05D007204 ORTHO05D008593 3.6e-34 149.1 181 48.1
ClCG03G000270 Citrullus lanatus HOM05D007204 ORTHO05D008593 4.7e-34 148.7 191 47.6
AUR62009682 Chenopodium quinoa HOM05D007204 ORTHO05D008593 8.1e-34 147.9 180 46.7
MSTRG.9779 Avicennia marina HOM05D007204 ORTHO05D008593 2.4e-33 146.4 186 42.5
BraA10t42821Z Brassica rapa HOM05D007204 ORTHO05D008593 3.1e-33 146.0 209 42.6
Cfa011760 Carpinus fangiana HOM05D007204 ORTHO05D008593 3.1e-33 146.0 133 62.4
DCAR_012274 Daucus carota HOM05D007204 ORTHO05D008593 4.0e-33 145.6 133 57.1
BcaC05g24674 Brassica carinata HOM05D007204 ORTHO05D008593 5.2e-33 145.2 187 44.9
Thhalv10009490m.g Eutrema salsugineum HOM05D007204 ORTHO05D008593 6.9e-33 144.8 162 49.4
Lsat_1_v5_gn_9_18401 Lactuca sativa HOM05D007204 ORTHO05D008593 6.9e-33 144.8 196 46.9
BcaNung06763 Brassica carinata HOM05D007204 ORTHO05D008593 1.2e-32 144.1 208 43.3
BolC5t29286H Brassica oleracea HOM05D007204 ORTHO05D008593 2.0e-32 143.3 210 41.9
FAN21G2638 Fragaria x ananassa HOM05D007204 ORTHO05D008593 2.0e-32 143.3 177 49.2
Sabra16G0175100 Salix brachista HOM05D007204 ORTHO05D008593 5.8e-32 141.7 152 51.3
HPP92_019711 Vanilla planifolia HOM05D000883 ORTHO05D002942 8.4e-31 137.9 187 43.3
Nitab4.5_0009741g0040 Nicotiana tabacum HOM05D007204 ORTHO05D008593 1.4e-30 137.1 248 39.1
Oeu034090.2 Olea europaea HOM05D007204 ORTHO05D008593 3.5e-29 132.5 204 42.6
AUR62001886 Chenopodium quinoa HOM05D007204 ORTHO05D008593 2.3e-28 129.8 217 39.2
Medtr3g031720 Medicago truncatula HOM05D007204 ORTHO05D008593 4.3e-27 125.6 145 45.5
CSS0017241 Camellia sinensis var. sinensis HOM05D007204 ORTHO05D008593 7.3e-27 124.8 122 54.1
CSS0041349 Camellia sinensis var. sinensis HOM05D007204 ORTHO05D008593 7.3e-27 124.8 122 54.1
Medtr3g031680 Medicago truncatula HOM05D007204 ORTHO05D008593 1.3e-26 124.0 135 48.9
Os12g0106100 Oryza sativa ssp. japonica HOM05D007204 ORTHO05D008593 1.1e-25 120.9 165 46.1
ECA247G3086 Erigeron canadensis HOM05D007204 ORTHO05D008593 3.1e-25 119.4 146 46.6
Os11g0106800 Oryza sativa ssp. japonica HOM05D007204 ORTHO05D008593 6.9e-25 118.2 165 44.8
Zm00001eb195020 Zea mays HOM05D007204 ORTHO05D008593 3.4e-24 115.9 168 42.3
SGA_v2.0_scaffold120G32948 Striga asiatica HOM05D007204 ORTHO05D008593 4.5e-24 115.5 151 45.7
Lj2A1091T48 Lonicera japonica HOM05D007204 ORTHO05D008593 9.9e-24 114.4 86 67.4
Hund18956 Selenicereus undatus HOM05D007204 ORTHO05D008593 1.9e-22 110.2 133 47.4
Sopen06g033710 Solanum pennellii HOM05D007204 ORTHO05D008593 1.9e-22 110.2 140 47.1
Lalb_Chr15g0083171 Lupinus albus HOM05D007204 ORTHO05D008593 4.2e-22 109.0 88 67.0
Glyma.18G058101 Glycine max HOM05D007204 ORTHO05D008593 7.1e-22 108.2 86 62.8
ATR0174G030 Amborella trichopoda HOM05D007204 ORTHO05D008593 3.5e-21 105.9 123 50.4
SEGI_02179 Sequoiadendron giganteum HOM05D056589 ORTHO05D008593 3.5e-21 105.9 187 36.4
unitig_94.g28350 Utricularia gibba HOM05D007204 ORTHO05D008593 4.6e-21 105.5 187 38.5
Solyc06g082320.4 Solanum lycopersicum HOM05D007204 ORTHO05D008593 1.5e-19 100.5 92 59.8
SalBow2G2431 Salvia bowleyana HOM05D007204 ORTHO05D008593 1.4e-17 94.0 133 43.6
vmacro02927 Vaccinium macrocarpon HOM05D007204 ORTHO05D008593 1.5e-11 73.9 137 40.1
SMO358G0161 Selaginella moellendorffii HOM05D007204 ORTHO05D008593 8.2e-10 68.2 92 42.4
Ca_05090_v3 Cicer arietinum L. HOM05D007204 ORTHO05D008593 1.4e-09 67.4 87 46.0
Ca_14995_v3 Cicer arietinum L. HOM05D007204 ORTHO05D008593 1.4e-09 67.4 87 46.0
Zm00001eb025660 Zea mays HOM05D007204 ORTHO05D008593 1.0e-07 61.2 58 53.4
TPR.G444 Trifolium pratense HOM05D007204 ORTHO05D008593 1.7e-07 60.5 48 60.4
Lalb_Chr15g0083181 Lupinus albus HOM05D007204 ORTHO05D008593 2.9e-07 59.7 61 55.7


User provided reference genes

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