Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR623G0308 Trochodendron aralioides HOM05D003272 ORTHO05D003776 0.0e+00 1250.3 618 100.0
TAR369G0864 Trochodendron aralioides HOM05D003272 ORTHO05D003776 8.6e-255 883.6 637 72.7
Nn7g35964 Nelumbo nucifera HOM05D003272 ORTHO05D003776 8.7e-183 644.4 633 56.9
Dinv16344 Davidia involucrata HOM05D003272 ORTHO05D003776 1.4e-151 540.8 628 51.4
MBI19_g17426_MAGBIO Magnolia biondii HOM05D003272 ORTHO05D003776 3.7e-149 532.7 639 51.3
Cfa020144 Carpinus fangiana HOM05D003272 ORTHO05D003776 2.0e-147 526.9 634 49.2
Aqoxy2G00092 Aquilegia oxysepala HOM05D003272 ORTHO05D003776 2.7e-144 516.5 642 47.7
Haze_20019 Corylus avellana HOM05D003272 ORTHO05D003776 3.6e-144 516.2 634 48.9
MBI13_g29652_MAGBIO Magnolia biondii HOM05D003272 ORTHO05D003776 1.4e-143 514.2 631 48.2
Atru.chr8.1154 Acer truncatum HOM05D003272 ORTHO05D003776 3.1e-140 503.1 625 49.3
Dinv24041 Davidia involucrata HOM05D003272 ORTHO05D003776 2.3e-138 496.9 625 48.5
CSS0044868 Camellia sinensis var. sinensis HOM05D003272 ORTHO05D003776 2.1e-136 490.3 624 46.2
QL07p024475 Quercus lobata HOM05D003272 ORTHO05D003776 4.7e-136 489.2 629 48.0
GSVIVG01033469001 Vitis vinifera HOM05D003272 ORTHO05D003776 4.5e-131 472.6 615 47.5
Ciclev10010926m.g Citrus clementina HOM05D003272 ORTHO05D003776 2.8e-128 463.4 615 45.2
CiPaw.10G025200 Carya illinoinensis HOM05D003272 ORTHO05D003776 9.2e-124 448.4 630 45.7
Thecc.05G174800 Theobroma cacao HOM05D003272 ORTHO05D003776 1.7e-122 444.1 619 45.2
Manes.08G042700 Manihot esculenta HOM05D003272 ORTHO05D003776 1.8e-119 434.1 620 43.9
CiPaw.09G028500 Carya illinoinensis HOM05D003272 ORTHO05D003776 2.2e-117 427.2 622 42.6
Duzib093G2065 Durio zibethinus HOM05D003272 ORTHO05D003776 2.2e-117 427.2 617 44.2
Cpa.g.sc85.47 Carica papaya HOM05D003272 ORTHO05D003776 8.3e-117 425.2 626 43.9
Potri.006G194500 Populus trichocarpa HOM05D003272 ORTHO05D003776 1.0e-114 418.3 631 43.7
Prupe.7G081000 Prunus persica HOM05D003272 ORTHO05D003776 1.1e-113 414.8 615 42.6
COL.COLO4_29357 Corchorus olitorius HOM05D003272 ORTHO05D003776 1.6e-112 411.0 620 44.0
Gohir.D04G097200 Gossypium hirsutum HOM05D003272 ORTHO05D003776 2.8e-112 410.2 619 43.1
Gorai.013G213300 Gossypium raimondii HOM05D003272 ORTHO05D003776 6.2e-112 409.1 619 43.1
RcHm_v2.0_Chr3g0479241 Rosa chinensis HOM05D003272 ORTHO05D003776 1.2e-110 404.8 620 41.5
CANSAT64G1991 Cannabis sativa HOM05D003272 ORTHO05D003776 2.9e-109 400.2 625 43.2
Sabra06G0149200 Salix brachista HOM05D003272 ORTHO05D003776 6.0e-107 392.5 621 42.4
Duzib106G0166 Durio zibethinus HOM05D003272 ORTHO05D003776 7.8e-107 392.1 620 42.1
Actinidia17288 Actinidia chinensis HOM05D003272 ORTHO05D003776 3.9e-106 389.8 613 42.4
Gorai.002G155500 Gossypium raimondii HOM05D003272 ORTHO05D003776 1.2e-104 384.8 666 39.3
Potri.016G060200 Populus trichocarpa HOM05D003272 ORTHO05D003776 1.2e-104 384.8 622 42.1
Gohir.D01G124900 Gossypium hirsutum HOM05D003272 ORTHO05D003776 2.1e-104 384.0 666 39.3
Rhsim04G0095400 Rhododendron simsii HOM05D003272 ORTHO05D003776 5.2e-103 379.4 627 41.1
Manes.09G037500 Manihot esculenta HOM05D003272 ORTHO05D003776 6.8e-103 379.0 626 41.4
FAN14G3195 Fragaria x ananassa HOM05D003272 ORTHO05D003776 2.0e-102 377.5 626 40.1
MD14G1054100 Malus domestica HOM05D003272 ORTHO05D003776 7.6e-102 375.6 625 41.6
FvH4_6g21890 Fragaria vesca HOM05D003272 ORTHO05D003776 9.9e-102 375.2 626 39.9
FAN09G3998 Fragaria x ananassa HOM05D003272 ORTHO05D003776 1.4e-100 371.3 620 39.7
Actinidia38598 Actinidia chinensis HOM05D003272 ORTHO05D003776 9.2e-100 368.6 614 41.7
Gohir.A01G137100 Gossypium hirsutum HOM05D003272 ORTHO05D003776 1.3e-98 364.8 670 38.1
Sabra16G0063100 Salix brachista HOM05D003272 ORTHO05D003776 6.6e-98 362.5 620 40.0
FAN02G4424 Fragaria x ananassa HOM05D003272 ORTHO05D003776 1.5e-97 361.3 620 39.2
arahy.Tifrunner.gnm1.ann1.VD9RJB Arachis hypogaea HOM05D003272 ORTHO05D003776 3.3e-97 360.1 620 41.0
TWI53G1277 Tripterygium wilfordii HOM05D003272 ORTHO05D003776 4.3e-97 359.8 619 38.9
PSO384G2805 Papaver somniferum HOM05D003272 ORTHO05D003776 9.6e-97 358.6 623 42.1
Glyma.03G146500 Glycine max HOM05D003272 ORTHO05D003776 3.6e-96 356.7 623 40.8
TPR.G13362 Trifolium pratense HOM05D003272 ORTHO05D003776 5.3e-95 352.8 628 40.8
Glyma.19G149800 Glycine max HOM05D003272 ORTHO05D003776 1.2e-94 351.7 624 41.0
TWI77G0466 Tripterygium wilfordii HOM05D003272 ORTHO05D003776 1.3e-93 348.2 624 39.3
EL10Ac3g06883 Beta vulgaris HOM05D003272 ORTHO05D003776 3.8e-93 346.7 609 38.6
ClCG04G000910 Citrullus lanatus HOM05D003272 ORTHO05D003776 1.1e-92 345.1 623 38.4
arahy.Tifrunner.gnm1.ann1.LQ935E Arachis hypogaea HOM05D003272 ORTHO05D003776 2.4e-92 344.0 624 39.9
Sed0015373 Sechium edule HOM05D003272 ORTHO05D003776 5.4e-92 342.8 635 38.4
vmacro22121 Vaccinium macrocarpon HOM05D003272 ORTHO05D003776 1.6e-91 341.3 630 39.4
Psat3g067560 Pisum sativum HOM05D003272 ORTHO05D003776 1.0e-90 338.6 611 40.1
Actinidia22066 Actinidia chinensis HOM05D003272 ORTHO05D003776 2.3e-90 337.4 572 40.9
AUR62012007 Chenopodium quinoa HOM05D003272 ORTHO05D003776 3.0e-90 337.0 608 39.0
Medtr7g093630 Medicago truncatula HOM05D003272 ORTHO05D003776 3.0e-90 337.0 614 40.1
Medtr1g054355 Medicago truncatula HOM05D003272 ORTHO05D003776 1.1e-89 335.1 622 40.2
MELO3C009057.2 Cucumis melo HOM05D003272 ORTHO05D003776 2.1e-88 330.9 628 38.1
TWI74G0429 Tripterygium wilfordii HOM05D003272 ORTHO05D003776 3.6e-88 330.1 621 38.2
PSO339G1267 Papaver somniferum HOM05D003272 ORTHO05D003776 1.1e-87 328.6 553 42.7
AUR62015331 Chenopodium quinoa HOM05D003272 ORTHO05D003776 2.4e-87 327.4 603 38.1
Sed0015981 Sechium edule HOM05D003272 ORTHO05D003776 6.9e-87 325.9 638 36.7
CsaV3_4G031310 Cucumis sativus L. HOM05D003272 ORTHO05D003776 2.9e-85 320.5 635 38.0
Phvul.001G144300 Phaseolus vulgaris HOM05D003272 ORTHO05D003776 6.4e-85 319.3 621 38.6
Ca_08539_v3 Cicer arietinum L. HOM05D003272 ORTHO05D003776 1.4e-84 318.2 625 38.9
Eucgr.K01852 Eucalyptus grandis HOM05D003272 ORTHO05D003776 1.6e-83 314.7 615 38.4
vmacro22626 Vaccinium macrocarpon HOM05D003272 ORTHO05D003776 2.1e-83 314.3 616 38.8
Hund24815 Selenicereus undatus HOM05D003272 ORTHO05D003776 1.0e-82 312.0 596 39.4
Ca_12034_v3 Cicer arietinum L. HOM05D003272 ORTHO05D003776 9.6e-81 305.4 623 38.0
Ca_12036_v3 Cicer arietinum L. HOM05D003272 ORTHO05D003776 9.6e-81 305.4 623 38.0
Cc06_g15520 Coffea canephora HOM05D003272 ORTHO05D003776 1.3e-80 305.1 618 37.2
Gohir.A04G054400 Gossypium hirsutum HOM05D003272 ORTHO05D003776 1.8e-79 301.2 465 41.9
Glyma.02G170900 Glycine max HOM05D003272 ORTHO05D003776 2.4e-79 300.8 620 37.9
Rhsim03G0003200 Rhododendron simsii HOM05D003272 ORTHO05D003776 4.0e-79 300.1 621 36.7
Lj2C363G5 Lonicera japonica HOM05D003272 ORTHO05D003776 5.3e-79 299.7 622 36.8
VMungo0720G0611 Vigna mungo HOM05D003272 ORTHO05D003776 9.0e-79 298.9 621 37.0
Lj1C1133T6 Lonicera japonica HOM05D003272 ORTHO05D003776 7.6e-78 295.8 614 37.9
Glyma.09G109000 Glycine max HOM05D003272 ORTHO05D003776 1.7e-77 294.7 629 36.4
Ah.04g152780 Amaranthus hybridus HOM05D003272 ORTHO05D003776 2.9e-77 293.9 616 36.7
Lj1g0008912 Lotus japonicus HOM05D003272 ORTHO05D003776 3.2e-76 290.4 626 35.5
THA.LOC104802668 Tarenaya hassleriana HOM05D003272 ORTHO05D003776 7.1e-76 289.3 625 35.8
PGR142G2098 Punica granatum HOM05D003272 ORTHO05D003776 1.6e-75 288.1 629 37.2
Sc13g0002400 Simmondsia chinensis HOM05D003272 ORTHO05D003776 1.0e-74 285.4 571 39.2
FAN05G4520 Fragaria x ananassa HOM05D003272 ORTHO05D003776 2.5e-73 280.8 620 34.5
MSTRG.6497 Avicennia marina HOM05D003272 ORTHO05D003776 3.3e-73 280.4 604 37.4
TPR.G30306 Trifolium pratense HOM05D003272 ORTHO05D003776 7.4e-73 279.3 626 35.5
Migut.J01867 Erythranthe guttata HOM05D003272 ORTHO05D003776 2.1e-72 277.7 618 36.1
Phvul.007G261300 Phaseolus vulgaris HOM05D003272 ORTHO05D003776 1.1e-71 275.4 618 35.6
Lalb_Chr15g0079101 Lupinus albus HOM05D003272 ORTHO05D003776 2.9e-69 267.3 629 34.8
Gohir.D09G124800 Gossypium hirsutum HOM05D003272 ORTHO05D003776 2.7e-67 260.8 603 34.2
Peaxi162Scf00003g04726 Petunia axillaris HOM05D003272 ORTHO05D003776 3.5e-67 260.4 616 36.5
Lalb_Chr18g0048041 Lupinus albus HOM05D003272 ORTHO05D003776 4.6e-67 260.0 624 34.6
DCAR_013670 Daucus carota HOM05D003272 ORTHO05D003776 6.1e-67 259.6 626 34.3
ATR0598G091 Amborella trichopoda HOM05D003272 ORTHO05D003776 1.3e-66 258.5 630 35.1
Sopen10g029630 Solanum pennellii HOM05D003272 ORTHO05D003776 2.3e-66 257.7 626 35.1
Gorai.006G143700 Gossypium raimondii HOM05D003272 ORTHO05D003776 3.0e-66 257.3 603 34.0
Lalb_Chr04g0259561 Lupinus albus HOM05D003272 ORTHO05D003776 3.0e-66 257.3 619 35.7
MSTRG.19926 Avicennia marina HOM05D003272 ORTHO05D003776 3.9e-66 256.9 609 36.8
CAN.G960.20 Capsicum annuum HOM05D003272 ORTHO05D003776 2.5e-65 254.2 622 35.2
Solyc10g079010.3 Solanum lycopersicum HOM05D003272 ORTHO05D003776 5.7e-65 253.1 625 35.5
THA.LOC104824482 Tarenaya hassleriana HOM05D003272 ORTHO05D003776 5.7e-65 253.1 618 35.8
Nitab4.5_0000358g0060 Nicotiana tabacum HOM05D003272 ORTHO05D003776 7.4e-65 252.7 618 34.8
Psat0s4022g0120 Pisum sativum HOM05D003272 ORTHO05D003776 7.4e-65 252.7 633 35.1
Lj5g0000225 Lotus japonicus HOM05D003272 ORTHO05D003776 1.3e-64 251.9 605 33.4
DCAR_017040 Daucus carota HOM05D003272 ORTHO05D003776 1.4e-63 248.4 584 34.9
SGA_v2.0_scaffold69G23041 Striga asiatica HOM05D003272 ORTHO05D003776 4.1e-63 246.9 601 34.4
Sp5g04670 Schrenkiella parvula HOM05D003272 ORTHO05D003776 2.7e-59 234.2 605 34.2
Peaxi162Scf00007g00424 Petunia axillaris HOM05D003272 ORTHO05D003776 6.1e-59 233.0 608 34.9
SalBow6G0671 Salvia bowleyana HOM05D003272 ORTHO05D003776 6.7e-58 229.6 611 32.9
AL4G40320 Arabidopsis lyrata HOM05D003272 ORTHO05D003776 8.8e-58 229.2 629 33.9
AL5G39720 Arabidopsis lyrata HOM05D003272 ORTHO05D003776 1.4e-55 221.9 609 32.8
AT3G58050 Arabidopsis thaliana HOM05D003272 ORTHO05D003776 1.8e-55 221.5 607 33.4
Aa31LG10G12750 Aethionema arabicum HOM05D003272 ORTHO05D003776 1.2e-54 218.8 589 34.5
Oeu046728.2 Olea europaea HOM05D003272 ORTHO05D003776 6.5e-53 213.0 602 32.9
Peaxi162Scf00463g00423 Petunia axillaris HOM05D003272 ORTHO05D003776 6.5e-53 213.0 619 31.7
CARHR168370 Cardamine hirsuta HOM05D003272 ORTHO05D003776 8.5e-53 212.6 589 33.6
Thhalv10016161m.g Eutrema salsugineum HOM05D003272 ORTHO05D003776 1.8e-50 204.9 625 31.8
Thhalv10016156m.g Eutrema salsugineum HOM05D003272 ORTHO05D003776 1.1e-49 202.2 620 31.3
Sp4g24230 Schrenkiella parvula HOM05D003272 ORTHO05D003776 2.0e-49 201.4 612 32.7
AT2G41960 Arabidopsis thaliana HOM05D003272 ORTHO05D003776 1.7e-45 188.3 624 30.8
Carub.0004s2429 Capsella rubella HOM05D003272 ORTHO05D003776 3.8e-45 187.2 630 30.5
Gohir.A09G128800 Gossypium hirsutum HOM05D003272 ORTHO05D003776 1.1e-44 185.7 459 34.6
Ah.13g075660 Amaranthus hybridus HOM05D003272 ORTHO05D003776 1.6e-43 181.8 565 31.5
Peaxi162Scf00003g00474 Petunia axillaris HOM05D003272 ORTHO05D003776 1.6e-43 181.8 488 35.0
HanXRQChr14g0438261 Helianthus annuus HOM05D003272 ORTHO05D003776 4.5e-38 163.7 597 30.5
ECA248G2064 Erigeron canadensis HOM05D003272 ORTHO05D003776 7.7e-38 162.9 604 30.3
C04p03190 Brassica napus HOM05D003272 ORTHO05D003776 4.7e-35 153.7 584 28.6
BolC4t21957H Brassica oleracea HOM05D003272 ORTHO05D003776 4.7e-35 153.7 584 28.6
C04p03170 Brassica napus HOM05D003272 ORTHO05D003776 1.2e-33 149.1 627 28.5
A05p02670 Brassica napus HOM05D003272 ORTHO05D003776 2.6e-33 147.9 612 27.8
Psat5g224680 Pisum sativum HOM05D003272 ORTHO05D003776 4.4e-33 147.1 272 39.7
Nitab4.5_0000009g0220 Nicotiana tabacum HOM05D003272 ORTHO05D003776 1.1e-31 142.5 270 37.4
BcaC02g12450 Brassica carinata HOM05D003272 ORTHO05D003776 1.8e-31 141.7 603 28.5
SEGI_10284 Sequoiadendron giganteum HOM05D003272 ORTHO05D003776 1.2e-30 139.0 658 26.3
SEGI_19750 Sequoiadendron giganteum HOM05D003272 ORTHO05D003776 1.2e-30 139.0 658 26.3
CARHR137060 Cardamine hirsuta HOM05D003272 ORTHO05D003776 4.5e-30 137.1 371 32.9
ECA238G2479 Erigeron canadensis HOM05D003272 ORTHO05D003776 4.5e-30 137.1 597 26.8
A05p02660 Brassica napus HOM05D003272 ORTHO05D003776 1.7e-29 135.2 317 35.0
BraA05t19259Z Brassica rapa HOM05D003272 ORTHO05D003776 2.9e-29 134.4 626 27.8
Nitab4.5_0002339g0030 Nicotiana tabacum HOM05D003272 ORTHO05D003776 9.4e-28 129.4 370 31.6
Lsat_1_v5_gn_1_60961 Lactuca sativa HOM05D003272 ORTHO05D003776 4.7e-27 127.1 478 30.8
BcaC02g12451 Brassica carinata HOM05D003272 ORTHO05D003776 4.4e-25 120.6 193 38.3
Aa31LG1G24170 Aethionema arabicum HOM05D003272 ORTHO05D003776 2.3e-21 108.2 200 36.0
HanXRQChr14g0443181 Helianthus annuus HOM05D003272 ORTHO05D003776 2.3e-18 98.2 319 33.9
BcaB01g03430 Brassica carinata HOM05D003272 ORTHO05D003776 4.0e-18 97.4 289 33.6
Lsat_1_v5_gn_2_56141 Lactuca sativa HOM05D003272 ORTHO05D003776 5.2e-18 97.1 189 34.9
Peaxi162Scf00003g00473 Petunia axillaris HOM05D003272 ORTHO05D003776 2.0e-17 95.1 167 38.9
CDE06G2439 Ceratophyllum demersum HOM05D003272 ORTHO05D003776 2.6e-17 94.7 383 29.5
HPP92_027847 Vanilla planifolia HOM05D003272 ORTHO05D003776 3.4e-17 94.4 549 25.7
BcaB01g03429 Brassica carinata HOM05D003272 ORTHO05D003776 4.1e-15 87.4 171 35.7
DCAR_019863 Daucus carota HOM05D003272 ORTHO05D003776 1.2e-14 85.9 349 29.5
unitig_0.g524 Utricularia gibba HOM05D003272 ORTHO05D003776 1.2e-14 85.9 171 37.4
SHI31754 Sapria himalayana HOM05D003272 ORTHO05D003776 7.8e-14 83.2 565 26.7
C01p16970 Brassica napus HOM05D003272 ORTHO05D003776 2.9e-13 81.3 90 44.4
CDE07G1637 Ceratophyllum demersum HOM05D003272 ORTHO05D003776 2.1e-11 75.1 538 25.7
Os03g0226600 Oryza sativa ssp. japonica HOM05D003272 ORTHO05D003776 3.1e-10 71.2 533 24.2
Oeu042821.1 Olea europaea HOM05D003272 ORTHO05D003776 5.8e-09 67.0 136 36.0
VMungo0647G0520 Vigna mungo HOM05D003272 ORTHO05D003776 5.4e-07 60.5 135 37.0
Glyma.09G211800 Glycine max HOM05D003272 ORTHO05D003776 1.2e-06 59.3 75 46.7


User provided reference genes

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