Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR623G0220 Trochodendron aralioides HOM05D005313 ORTHO05D006317 1.9e-201 705.7 363 100.0
CSS0048776 Camellia sinensis var. sinensis HOM05D005313 ORTHO05D006317 4.1e-164 581.6 351 84.0
Potri.008G128900 Populus trichocarpa HOM05D005313 ORTHO05D006317 1.3e-162 576.6 351 81.8
Lj6A747T68 Lonicera japonica HOM05D005313 ORTHO05D006317 2.5e-161 572.4 350 83.1
QL01p001863 Quercus lobata HOM05D005313 ORTHO05D006317 3.6e-160 568.5 353 82.4
COL.COLO4_20475 Corchorus olitorius HOM05D005313 ORTHO05D006317 6.1e-160 567.8 352 81.5
PSO384G2037 Papaver somniferum HOM05D005313 ORTHO05D006317 2.3e-159 565.8 339 84.1
Atru.chr9.122 Acer truncatum HOM05D005313 ORTHO05D006317 1.2e-158 563.5 339 82.6
Lalb_Chr17g0338641 Lupinus albus HOM05D005313 ORTHO05D006317 1.5e-158 563.1 350 81.4
Glyma.02G238100 Glycine max HOM05D005313 ORTHO05D006317 2.0e-158 562.8 350 80.9
PSO339G3364 Papaver somniferum HOM05D005313 ORTHO05D006317 4.4e-158 561.6 339 83.8
Rhsim02G0199800 Rhododendron simsii HOM05D005313 ORTHO05D006317 4.4e-158 561.6 351 80.9
TWI31G1405 Tripterygium wilfordii HOM05D005313 ORTHO05D006317 5.7e-158 561.2 336 83.0
vmacro10642 Vaccinium macrocarpon HOM05D005313 ORTHO05D006317 5.7e-158 561.2 351 81.8
Glyma.09G118600 Glycine max HOM05D005313 ORTHO05D006317 1.7e-157 559.7 350 80.3
Medtr1g030750 Medicago truncatula HOM05D005313 ORTHO05D006317 3.7e-157 558.5 335 83.6
Lj2g0003652 Lotus japonicus HOM05D005313 ORTHO05D006317 6.3e-157 557.8 335 83.9
Manes.17G006600 Manihot esculenta HOM05D005313 ORTHO05D006317 6.3e-157 557.8 335 83.3
MD16G1029000 Malus domestica HOM05D005313 ORTHO05D006317 5.3e-156 554.7 335 82.4
Thecc.02G280500 Theobroma cacao HOM05D005313 ORTHO05D006317 7.0e-156 554.3 353 79.9
GSVIVG01011763001 Vitis vinifera HOM05D005313 ORTHO05D006317 9.1e-156 553.9 315 87.0
Cfa008602 Carpinus fangiana HOM05D005313 ORTHO05D006317 1.6e-155 553.1 328 84.8
RcHm_v2.0_Chr4g0441121 Rosa chinensis HOM05D005313 ORTHO05D006317 2.7e-155 552.4 335 81.5
Phvul.003G023500 Phaseolus vulgaris HOM05D005313 ORTHO05D006317 3.5e-155 552.0 350 79.4
Psat6g042560 Pisum sativum HOM05D005313 ORTHO05D006317 4.5e-155 551.6 335 82.4
MSTRG.895 Avicennia marina HOM05D005313 ORTHO05D006317 5.9e-155 551.2 350 80.9
Sabra08G0097700 Salix brachista HOM05D005313 ORTHO05D006317 1.7e-154 549.7 412 70.1
Prupe.1G323900 Prunus persica HOM05D005313 ORTHO05D006317 2.9e-154 548.9 346 79.5
Eucgr.G02191 Eucalyptus grandis HOM05D005313 ORTHO05D006317 3.8e-154 548.5 341 81.8
FvH4_4g32330 Fragaria vesca HOM05D005313 ORTHO05D006317 3.8e-154 548.5 335 81.2
Thhalv10000908m.g Eutrema salsugineum HOM05D005313 ORTHO05D006317 1.1e-153 547.0 352 78.1
Gorai.002G179900 Gossypium raimondii HOM05D005313 ORTHO05D006317 1.1e-153 547.0 353 79.0
PGR119G0894 Punica granatum HOM05D005313 ORTHO05D006317 1.5e-153 546.6 330 83.0
Gohir.A01G152800 Gossypium hirsutum HOM05D005313 ORTHO05D006317 2.5e-153 545.8 353 79.3
Cc11_g08770 Coffea canephora HOM05D005313 ORTHO05D006317 4.2e-153 545.0 344 79.7
SalBow4G0219 Salvia bowleyana HOM05D005313 ORTHO05D006317 1.6e-152 543.1 355 78.3
FAN17G2517 Fragaria x ananassa HOM05D005313 ORTHO05D006317 4.7e-152 541.6 342 79.5
CDE05G1915 Ceratophyllum demersum HOM05D005313 ORTHO05D006317 6.1e-152 541.2 346 79.5
Gohir.D01G145600 Gossypium hirsutum HOM05D005313 ORTHO05D006317 1.8e-151 539.7 353 77.9
Solyc05g008180.3 Solanum lycopersicum HOM05D005313 ORTHO05D006317 1.8e-151 539.7 351 77.2
Nitab4.5_0000742g0010 Nicotiana tabacum HOM05D005313 ORTHO05D006317 2.3e-151 539.3 350 78.3
THA.LOC104805057 Tarenaya hassleriana HOM05D005313 ORTHO05D006317 4.0e-151 538.5 352 77.0
Aa31LG2G8560 Aethionema arabicum HOM05D005313 ORTHO05D006317 5.2e-151 538.1 362 76.0
AT2G01350 Arabidopsis thaliana HOM05D005313 ORTHO05D006317 5.2e-151 538.1 351 77.2
ECA246G2448 Erigeron canadensis HOM05D005313 ORTHO05D006317 5.2e-151 538.1 349 77.9
FAN22G0311 Fragaria x ananassa HOM05D005313 ORTHO05D006317 5.2e-151 538.1 342 78.9
HanXRQChr15g0488661 Helianthus annuus HOM05D005313 ORTHO05D006317 6.8e-151 537.7 338 78.1
Sopen05g004020 Solanum pennellii HOM05D005313 ORTHO05D006317 8.8e-151 537.3 351 76.9
BcaB07g30404 Brassica carinata HOM05D005313 ORTHO05D006317 1.5e-150 536.6 353 76.8
Oeu024584.1 Olea europaea HOM05D005313 ORTHO05D006317 2.0e-150 536.2 348 78.7
VMungo1215G0481 Vigna mungo HOM05D005313 ORTHO05D006317 2.0e-150 536.2 335 80.9
Ca_25713_v3 Cicer arietinum L. HOM05D005313 ORTHO05D006317 2.6e-150 535.8 369 74.5
Peaxi162Scf00159g00112 Petunia axillaris HOM05D005313 ORTHO05D006317 9.8e-150 533.9 346 78.9
AL5G10310 Arabidopsis lyrata HOM05D005313 ORTHO05D006317 1.3e-149 533.5 351 76.9
Dinv17424 Davidia involucrata HOM05D005313 ORTHO05D006317 1.7e-149 533.1 318 84.3
Sp2g12800 Schrenkiella parvula HOM05D005313 ORTHO05D006317 2.2e-149 532.7 352 76.7
CARHR143870 Cardamine hirsuta HOM05D005313 ORTHO05D006317 1.8e-148 529.6 356 75.6
CANSAT01G3269 Cannabis sativa HOM05D005313 ORTHO05D006317 3.1e-148 528.9 335 81.5
FAN07G2253 Fragaria x ananassa HOM05D005313 ORTHO05D006317 3.1e-148 528.9 360 74.7
Lsat_1_v5_gn_3_54641 Lactuca sativa HOM05D005313 ORTHO05D006317 1.6e-147 526.6 365 73.4
Peaxi162Scf00450g00614 Petunia axillaris HOM05D005313 ORTHO05D006317 1.6e-147 526.6 345 78.3
C02p49400 Brassica napus HOM05D005313 ORTHO05D006317 2.7e-147 525.8 353 75.9
Aqoxy1G00025 Aquilegia oxysepala HOM05D005313 ORTHO05D006317 4.5e-147 525.0 313 85.0
Carub.0005s0033 Capsella rubella HOM05D005313 ORTHO05D006317 4.5e-147 525.0 316 83.2
A02p31910 Brassica napus HOM05D005313 ORTHO05D006317 5.9e-147 524.6 354 75.7
BraA02t08201Z Brassica rapa HOM05D005313 ORTHO05D006317 5.9e-147 524.6 354 75.7
BolC2t11026H Brassica oleracea HOM05D005313 ORTHO05D006317 1.7e-146 523.1 354 75.4
BcaC03g17029 Brassica carinata HOM05D005313 ORTHO05D006317 5.0e-146 521.5 354 75.1
MELO3C018332.2 Cucumis melo HOM05D005313 ORTHO05D006317 5.0e-146 521.5 336 78.0
PGSC0003DMG400030501 Solanum tuberosum HOM05D005313 ORTHO05D006317 8.6e-146 520.8 317 82.0
CsaV3_5G013570 Cucumis sativus L. HOM05D005313 ORTHO05D006317 1.6e-144 516.5 336 77.4
Haze_11011 Corylus avellana HOM05D005313 ORTHO05D006317 2.1e-144 516.2 318 81.4
Sc14g0007170 Simmondsia chinensis HOM05D005313 ORTHO05D006317 2.1e-144 516.2 317 81.7
AUR62017725 Chenopodium quinoa HOM05D005313 ORTHO05D006317 6.8e-143 511.1 311 81.7
Sed0021241 Sechium edule HOM05D005313 ORTHO05D006317 9.8e-142 507.3 335 77.0
Hund08629 Selenicereus undatus HOM05D005313 ORTHO05D006317 1.8e-140 503.1 311 80.1
Duzib248G1582 Durio zibethinus HOM05D005313 ORTHO05D006317 4.1e-140 501.9 353 73.9
EL10Ac7g15995 Beta vulgaris HOM05D005313 ORTHO05D006317 5.4e-140 501.5 311 79.4
Os09g0553600 Oryza sativa ssp. japonica HOM05D005313 ORTHO05D006317 2.0e-139 499.6 363 69.7
Ciclev10018157m.g Citrus clementina HOM05D005313 ORTHO05D006317 4.3e-137 491.9 305 81.3
HPP92_025383 Vanilla planifolia HOM05D005313 ORTHO05D006317 9.5e-137 490.7 335 74.3
Zm00001eb104420 Zea mays HOM05D005313 ORTHO05D006317 2.8e-136 489.2 313 76.7
SalBow4G0808 Salvia bowleyana HOM05D005313 ORTHO05D006317 8.0e-136 487.6 322 76.7
AUR62032955 Chenopodium quinoa HOM05D005313 ORTHO05D006317 1.0e-135 487.3 361 71.2
SGA_v2.0_scaffold50G18517 Striga asiatica HOM05D005313 ORTHO05D006317 5.2e-135 485.0 350 72.6
CiPaw.06G012200 Carya illinoinensis HOM05D005313 ORTHO05D006317 3.4e-134 482.3 312 78.8
CAN.G1334.2 Capsicum annuum HOM05D005313 ORTHO05D006317 6.4e-133 478.0 287 84.0
BcaC03g17031 Brassica carinata HOM05D005313 ORTHO05D006317 1.1e-132 477.2 354 72.0
Ah.01g012630 Amaranthus hybridus HOM05D005313 ORTHO05D006317 1.5e-129 466.8 316 75.0
Cpa.g.sc65.129 Carica papaya HOM05D005313 ORTHO05D006317 1.9e-129 466.5 330 73.6
FAN12G1743 Fragaria x ananassa HOM05D005313 ORTHO05D006317 3.3e-129 465.7 389 64.5
Duzib248G1474 Durio zibethinus HOM05D005313 ORTHO05D006317 9.5e-129 464.2 300 77.3
Pp3c8_18030 Physcomitrium patens HOM05D005313 ORTHO05D006317 6.8e-127 458.0 314 73.6
unitig_0.g2330 Utricularia gibba HOM05D005313 ORTHO05D006317 8.3e-125 451.1 323 72.4
Migut.L00987 Erythranthe guttata HOM05D005313 ORTHO05D006317 1.4e-124 450.3 296 75.7
Nn2g15695 Nelumbo nucifera HOM05D005313 ORTHO05D006317 7.0e-124 448.0 354 70.6
arahy.Tifrunner.gnm1.ann1.Y1EHRK Arachis hypogaea HOM05D005313 ORTHO05D006317 2.1e-120 436.4 335 68.4
arahy.Tifrunner.gnm1.ann1.G5QWBZ Arachis hypogaea HOM05D005313 ORTHO05D006317 2.6e-118 429.5 344 66.9
SMO164G0169 Selaginella moellendorffii HOM05D005313 ORTHO05D006317 9.9e-118 427.6 314 68.5
Nitab4.5_0004816g0010 Nicotiana tabacum HOM05D005313 ORTHO05D006317 2.8e-112 409.5 242 85.5
Mapoly0011s0070 Marchantia polymorpha HOM05D005313 ORTHO05D006317 6.2e-112 408.3 301 66.1
CBR_g30917 Chara braunii HOM05D005313 ORTHO05D006317 1.7e-106 390.2 351 59.3
SEGI_23840 Sequoiadendron giganteum HOM05D005313 ORTHO05D006317 3.0e-106 389.4 255 76.1
DCAR_023608 Daucus carota HOM05D005313 ORTHO05D006317 1.5e-102 377.1 221 85.1
Ca_12605_v3 Cicer arietinum L. HOM05D005313 ORTHO05D006317 5.6e-97 358.6 217 79.7
MCO15G382 Micromonas commoda HOM05D005313 ORTHO05D006317 1.5e-86 323.9 303 56.8
AagrBONN_evm.TU.Sc2ySwM_117.3802 Anthoceros agrestis HOM05D005313 ORTHO05D006317 2.2e-85 320.1 230 70.4
ATR0807G196 Amborella trichopoda HOM05D005313 ORTHO05D006317 1.8e-82 310.5 192 82.8
Cre02.g141200 Chlamydomonas reinhardtii HOM05D005313 ORTHO05D006317 6.7e-82 308.5 308 55.5
PRCOL_00006420 Prasinoderma coloniale HOM05D005313 ORTHO05D006317 3.3e-81 306.2 307 52.4
ClCG07G006260 Citrullus lanatus HOM05D005313 ORTHO05D006317 5.6e-81 305.4 187 81.8
Zm00001eb320780 Zea mays HOM05D005313 ORTHO05D006317 1.1e-76 291.2 220 67.7
Potri.010G113500 Populus trichocarpa HOM05D005313 ORTHO05D006317 7.9e-75 285.0 212 66.5
Dinv05167 Davidia involucrata HOM05D005313 ORTHO05D006317 8.7e-74 281.6 167 87.4
Migut.L00982 Erythranthe guttata HOM05D005313 ORTHO05D006317 4.6e-67 259.2 353 45.9
Actinidia26811 Actinidia chinensis HOM05D005313 ORTHO05D006317 1.3e-61 241.1 151 76.8
CsaV3_UNG236450 Cucumis sativus L. HOM05D005313 ORTHO05D006317 1.5e-57 227.6 292 46.6
SHI04677 Sapria himalayana HOM05D005313 ORTHO05D006317 7.0e-55 218.8 160 69.4
SHI04675 Sapria himalayana HOM05D005313 ORTHO05D006317 1.6e-51 207.6 148 68.9
A06p44480 Brassica napus HOM05D005313 ORTHO05D006317 1.6e-46 191.0 242 50.4
AagrBONN_evm.TU.Sc2ySwM_368.1836 Anthoceros agrestis HOM05D005313 ORTHO05D006317 1.7e-40 171.0 145 58.6
Actinidia14964 Actinidia chinensis HOM05D005313 ORTHO05D006317 5.3e-39 166.0 264 42.0
Sabra10G0083500 Salix brachista HOM05D005313 ORTHO05D006317 4.5e-38 162.9 266 39.8
RcHm_v2.0_Chr2g0157601 Rosa chinensis HOM05D005313 ORTHO05D006317 6.5e-37 159.1 123 59.3
Ca_31307_v3 Cicer arietinum L. HOM05D005313 ORTHO05D006317 1.5e-36 157.9 280 33.6
Oeu045874.1 Olea europaea HOM05D005313 ORTHO05D006317 6.1e-35 152.5 243 44.4
ClCG07G006250 Citrullus lanatus HOM05D005313 ORTHO05D006317 9.8e-33 145.2 99 65.7
TPR.G36891 Trifolium pratense HOM05D005313 ORTHO05D006317 7.7e-30 135.6 101 74.3
COL.COLO4_10085 Corchorus olitorius HOM05D005313 ORTHO05D006317 1.7e-29 134.4 85 72.9
Glyma.07G165500 Glycine max HOM05D005313 ORTHO05D006317 9.5e-28 128.6 97 71.1
TPR.G36912 Trifolium pratense HOM05D005313 ORTHO05D006317 7.0e-23 112.5 74 66.2
CSS0042289 Camellia sinensis var. sinensis HOM05D005313 ORTHO05D006317 2.0e-22 110.9 108 57.4
CAN.G1020.2 Capsicum annuum HOM05D005313 ORTHO05D006317 3.5e-22 110.2 113 54.9
Aa31LG11G8270 Aethionema arabicum HOM05D005313 ORTHO05D006317 8.0e-19 99.0 88 64.8
CsaV3_UNG236470 Cucumis sativus L. HOM05D005313 ORTHO05D006317 2.3e-18 97.4 60 81.7
COL.COLO4_10084 Corchorus olitorius HOM05D005313 ORTHO05D006317 4.0e-18 96.7 54 75.9
MBI06_g07791_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 1.5e-17 94.7 59 84.7
Aa31LG11G8280 Aethionema arabicum HOM05D005313 ORTHO05D006317 5.4e-15 86.3 62 64.5
BcaC06g31315 Brassica carinata HOM05D005313 ORTHO05D006317 9.2e-15 85.5 55 72.7
Actinidia01955 Actinidia chinensis HOM05D005313 ORTHO05D006317 3.3e-12 77.0 43 79.1
AagrBONN_evm.TU.Sc2ySwM_117.3801 Anthoceros agrestis HOM05D005313 ORTHO05D006317 3.4e-09 67.0 58 55.2
DCAR_023607 Daucus carota HOM05D005313 ORTHO05D006317 1.2e-06 58.5 61 50.8


User provided reference genes

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