Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR623G0118 Trochodendron aralioides HOM05D000026 ORTHO05D016400 2.3e-47 191.8 91 100.0
Dinv03369 Davidia involucrata HOM05D000026 ORTHO05D000094 3.8e-18 94.7 80 62.5
Dinv06760 Davidia involucrata HOM05D000026 ORTHO05D000094 5.0e-18 94.4 80 62.5
TAR624G0029 Trochodendron aralioides HOM05D000026 ORTHO05D000094 1.1e-17 93.2 70 68.6
TAR636G1674 Trochodendron aralioides HOM05D000026 ORTHO05D000094 2.5e-17 92.0 72 68.1
MD01G1137400 Malus domestica HOM05D000026 ORTHO05D000094 6.7e-15 84.0 72 59.7
Prupe.2G238700 Prunus persica HOM05D000026 ORTHO05D000094 8.8e-15 83.6 76 60.5
Duzib114G0888 Durio zibethinus HOM05D000026 ORTHO05D000094 2.5e-14 82.0 76 56.6
MD01G1137700 Malus domestica HOM05D000026 ORTHO05D000094 3.3e-14 81.6 72 58.3
Manes.10G027700 Manihot esculenta HOM05D000026 ORTHO05D000094 3.3e-14 81.6 70 58.6
MD01G1137500 Malus domestica HOM05D000026 ORTHO05D000094 5.7e-14 80.9 72 58.3
Nitab4.5_0010084g0010 Nicotiana tabacum HOM05D000026 ORTHO05D000094 5.7e-14 80.9 84 54.8
Duzib106G1635 Durio zibethinus HOM05D000026 ORTHO05D000094 9.7e-14 80.1 76 55.3
MSTRG.8268 Avicennia marina HOM05D000026 ORTHO05D000094 1.7e-13 79.3 66 63.6
Nitab4.5_0000647g0120 Nicotiana tabacum HOM05D000026 ORTHO05D000094 2.8e-13 78.6 84 52.4
CSS0043637 Camellia sinensis var. sinensis HOM05D000026 ORTHO05D000094 3.7e-13 78.2 83 54.2
Solyc05g053010.1 Solanum lycopersicum HOM05D000026 ORTHO05D000094 3.7e-13 78.2 75 57.3
Gohir.A05G302200 Gossypium hirsutum HOM05D000026 ORTHO05D000094 4.8e-13 77.8 62 62.9
Gohir.D05G301700 Gossypium hirsutum HOM05D000026 ORTHO05D000094 4.8e-13 77.8 62 62.9
Gorai.009G319800 Gossypium raimondii HOM05D000026 ORTHO05D000094 4.8e-13 77.8 62 62.9
Peaxi162Scf00164g00125 Petunia axillaris HOM05D000026 ORTHO05D000094 4.8e-13 77.8 75 54.7
QL08p060658 Quercus lobata HOM05D000026 ORTHO05D000094 1.8e-12 75.9 82 54.9
FAN10G3953 Fragaria x ananassa HOM05D000026 ORTHO05D000094 2.4e-12 75.5 77 53.2
SalBow6G1048 Salvia bowleyana HOM05D000026 ORTHO05D000094 2.4e-12 75.5 74 55.4
SalBow6G1816 Salvia bowleyana HOM05D000026 ORTHO05D000094 2.4e-12 75.5 74 55.4
Dinv26039 Davidia involucrata HOM05D000026 ORTHO05D000094 3.1e-12 75.1 72 61.1
Nn2g13452 Nelumbo nucifera HOM05D000026 ORTHO05D000094 3.1e-12 75.1 56 67.9
Atru.chr12.406 Acer truncatum HOM05D000026 ORTHO05D000094 5.3e-12 74.3 82 48.8
CAN.G1184.12 Capsicum annuum HOM05D000026 ORTHO05D000094 6.9e-12 73.9 75 56.0
Haze_17107 Corylus avellana HOM05D000026 ORTHO05D000094 6.9e-12 73.9 59 64.4
Lj8C81T7 Lonicera japonica HOM05D000026 ORTHO05D000094 6.9e-12 73.9 70 54.3
FvH4_7g22900 Fragaria vesca HOM05D000026 ORTHO05D000094 9.1e-12 73.6 78 52.6
FAN01G0205 Fragaria x ananassa HOM05D000026 ORTHO05D000094 9.1e-12 73.6 78 52.6
FAN01G3023 Fragaria x ananassa HOM05D000026 ORTHO05D000094 9.1e-12 73.6 78 52.6
FAN06G1548 Fragaria x ananassa HOM05D000026 ORTHO05D000094 9.1e-12 73.6 78 52.6
FAN06G4380 Fragaria x ananassa HOM05D000026 ORTHO05D000094 9.1e-12 73.6 78 52.6
PGSC0003DMG400027140 Solanum tuberosum HOM05D000026 ORTHO05D000094 9.1e-12 73.6 75 54.7
FAN03G0439 Fragaria x ananassa HOM05D000026 ORTHO05D000094 1.2e-11 73.2 77 51.9
Sopen05g031530 Solanum pennellii HOM05D000026 ORTHO05D000094 1.2e-11 73.2 75 54.7
RcHm_v2.0_Chr1g0368061 Rosa chinensis HOM05D000026 ORTHO05D000094 1.5e-11 72.8 74 56.8
CiPaw.02G185800 Carya illinoinensis HOM05D000026 ORTHO05D000094 2.0e-11 72.4 78 53.8
Thecc.10G038400 Theobroma cacao HOM05D000026 ORTHO05D000094 2.0e-11 72.4 76 52.6
Cfa001442 Carpinus fangiana HOM05D000026 ORTHO05D016400 2.6e-11 72.0 62 61.3
Lj2C90T8 Lonicera japonica HOM05D000026 ORTHO05D000094 2.6e-11 72.0 75 57.3
Lju2578C0T11 Lonicera japonica HOM05D000026 ORTHO05D000094 2.6e-11 72.0 75 57.3
Potri.010G200600 Populus trichocarpa HOM05D000026 ORTHO05D000094 2.6e-11 72.0 83 51.8
Sabra10G0154800 Salix brachista HOM05D000026 ORTHO05D000094 2.6e-11 72.0 67 55.2
CiPaw.09G197200 Carya illinoinensis HOM05D000026 ORTHO05D000094 3.4e-11 71.6 85 47.1
Dinv35571 Davidia involucrata HOM05D000026 ORTHO05D000094 5.9e-11 70.9 68 52.9
Gohir.A10G221600 Gossypium hirsutum HOM05D000026 ORTHO05D000094 7.7e-11 70.5 62 56.5
HanXRQChr10g0312831 Helianthus annuus HOM05D000026 ORTHO05D000094 7.7e-11 70.5 58 65.5
Aqoxy1G00873 Aquilegia oxysepala HOM05D000026 ORTHO05D000094 1.0e-10 70.1 55 65.5
CiPaw.01G290100 Carya illinoinensis HOM05D000026 ORTHO05D000094 1.3e-10 69.7 81 48.1
CiPaw.10G147400 Carya illinoinensis HOM05D000026 ORTHO05D000094 1.3e-10 69.7 57 63.2
MD01G1137300 Malus domestica HOM05D000026 ORTHO05D000094 1.3e-10 69.7 44 68.2
Hma1.2p1_0039F.1_g024380 Hydrangea macrophylla HOM05D000026 ORTHO05D000094 1.7e-10 69.3 73 56.2
Eucgr.G02954 Eucalyptus grandis HOM05D000026 ORTHO05D000094 2.2e-10 68.9 76 50.0
Gohir.D10G233900 Gossypium hirsutum HOM05D000026 ORTHO05D000094 2.2e-10 68.9 62 54.8
Gorai.011G267500 Gossypium raimondii HOM05D000026 ORTHO05D000094 2.2e-10 68.9 62 54.8
CSS0043255 Camellia sinensis var. sinensis HOM05D000026 ORTHO05D000094 2.9e-10 68.6 74 54.1
Cfa001439 Carpinus fangiana HOM05D000026 ORTHO05D016400 2.9e-10 68.6 59 59.3
Haze_17100 Corylus avellana HOM05D000026 ORTHO05D000094 2.9e-10 68.6 58 58.6
Lsat_1_v5_gn_2_118780 Lactuca sativa HOM05D000026 ORTHO05D000094 5.0e-10 67.8 60 60.0
PSO063G0189 Papaver somniferum HOM05D000026 ORTHO05D000094 5.0e-10 67.8 80 51.2
QL01p036808 Quercus lobata HOM05D000026 ORTHO05D000094 5.0e-10 67.8 57 61.4
CiPaw.09G196300 Carya illinoinensis HOM05D000026 ORTHO05D000094 6.5e-10 67.4 75 50.7
CiPaw.09G196600 Carya illinoinensis HOM05D000026 ORTHO05D000094 6.5e-10 67.4 75 49.3
CiPaw.10G147500 Carya illinoinensis HOM05D000026 ORTHO05D000094 6.5e-10 67.4 57 63.2
ECA238G2907 Erigeron canadensis HOM05D000026 ORTHO05D000094 6.5e-10 67.4 62 59.7
Potri.016G101000 Populus trichocarpa HOM05D000026 ORTHO05D000094 6.5e-10 67.4 74 54.1
Ciclev10030854m.g Citrus clementina HOM05D000026 ORTHO05D000094 8.5e-10 67.0 83 49.4
Duzib093G0296 Durio zibethinus HOM05D000026 ORTHO05D000094 1.9e-09 65.9 57 59.6
Sabra16G0101700 Salix brachista HOM05D000026 ORTHO05D000094 1.9e-09 65.9 73 52.1
MD01G1137600 Malus domestica HOM05D000026 ORTHO05D000094 2.5e-09 65.5 65 49.2
Atru.chr8.2018 Acer truncatum HOM05D000026 ORTHO05D000094 3.2e-09 65.1 65 60.0
Atru.chr8.2027 Acer truncatum HOM05D000026 ORTHO05D016400 3.2e-09 65.1 65 60.0
Ah.16g102540 Amaranthus hybridus HOM05D000026 ORTHO05D000094 4.2e-09 64.7 67 50.7
Cc02_g07510 Coffea canephora HOM05D000026 ORTHO05D000094 4.2e-09 64.7 78 47.4
Migut.J00301 Erythranthe guttata HOM05D000026 ORTHO05D000094 4.2e-09 64.7 67 50.7
Glyma.07G135600 Glycine max HOM05D000026 ORTHO05D000094 4.2e-09 64.7 53 60.4
Hma1.2p1_0766F.1_g215320 Hydrangea macrophylla HOM05D000026 ORTHO05D000094 4.2e-09 64.7 83 48.2
Hma1.2p1_3659F.1_g337190 Hydrangea macrophylla HOM05D000026 ORTHO05D000094 4.2e-09 64.7 83 48.2
GSVIVG01016502001 Vitis vinifera HOM05D000026 ORTHO05D000094 4.2e-09 64.7 37 78.4
Cfa021501 Carpinus fangiana HOM05D000026 ORTHO05D000094 5.5e-09 64.3 61 59.0
AUR62040708 Chenopodium quinoa HOM05D000026 ORTHO05D000094 9.4e-09 63.5 64 48.4
CsaV3_3G034680 Cucumis sativus L. HOM05D000026 ORTHO05D000094 9.4e-09 63.5 86 43.0
Duzib106G1546 Durio zibethinus HOM05D000026 ORTHO05D000094 9.4e-09 63.5 57 54.4
Thecc.05G034500 Theobroma cacao HOM05D000026 ORTHO05D000094 9.4e-09 63.5 73 49.3
Sc11g0007760 Simmondsia chinensis HOM05D000026 ORTHO05D000094 1.2e-08 63.2 77 48.1
AUR62012128 Chenopodium quinoa HOM05D000026 ORTHO05D000094 1.6e-08 62.8 64 48.4
ClCG10G021350 Citrullus lanatus HOM05D000026 ORTHO05D000094 1.6e-08 62.8 86 41.9
Dinv37145 Davidia involucrata HOM05D000026 ORTHO05D000094 1.6e-08 62.8 53 66.0
TWI38G0095 Tripterygium wilfordii HOM05D000026 ORTHO05D000094 1.6e-08 62.8 67 50.7
Glyma.03G068600 Glycine max HOM05D000026 ORTHO05D000094 2.1e-08 62.4 75 46.7
PGR142G1525 Punica granatum HOM05D000026 ORTHO05D000094 2.7e-08 62.0 80 50.0
CSS0023182 Camellia sinensis var. sinensis HOM05D000026 ORTHO05D000094 3.6e-08 61.6 54 59.3
CSS0041419 Camellia sinensis var. sinensis HOM05D000026 ORTHO05D000094 3.6e-08 61.6 54 59.3
MELO3C009237.2 Cucumis melo HOM05D000026 ORTHO05D000094 3.6e-08 61.6 86 41.9
Glyma.01G101000 Glycine max HOM05D000026 ORTHO05D000094 3.6e-08 61.6 75 46.7
Lj6g0000349 Lotus japonicus HOM05D000026 ORTHO05D000094 3.6e-08 61.6 80 45.0
TPR.G34836 Trifolium pratense HOM05D000096 ORTHO05D000045 3.6e-08 61.6 53 58.5
Ciclev10013799m.g Citrus clementina HOM05D000026 ORTHO05D000094 4.7e-08 61.2 69 50.7
Glyma.18G185500 Glycine max HOM05D000026 ORTHO05D000094 4.7e-08 61.2 53 58.5
CANSAT35G0073 Cannabis sativa HOM05D000026 ORTHO05D000094 6.1e-08 60.8 63 57.1
MD12G1147700 Malus domestica HOM05D000026 ORTHO05D000094 6.1e-08 60.8 70 45.7
Phvul.008G117700 Phaseolus vulgaris HOM05D000026 ORTHO05D000094 6.1e-08 60.8 53 56.6
VMungo1383G1488 Vigna mungo HOM05D000026 ORTHO05D000094 6.1e-08 60.8 53 56.6
EL10Ac2g04714 Beta vulgaris HOM05D000026 ORTHO05D000094 7.9e-08 60.5 64 50.0
VMungo0331G1852 Vigna mungo HOM05D000026 ORTHO05D000094 7.9e-08 60.5 53 56.6
Oeu017648.1 Olea europaea HOM05D000026 ORTHO05D000094 1.0e-07 60.1 54 57.4
Solyc09g011070.1 Solanum lycopersicum HOM05D000026 ORTHO05D000094 1.0e-07 60.1 69 46.4
Sopen09g005820 Solanum pennellii HOM05D000026 ORTHO05D000094 1.0e-07 60.1 69 46.4
Oeu001855.1 Olea europaea HOM05D000026 ORTHO05D000094 1.4e-07 59.7 62 54.8
Gohir.A01G221701 Gossypium hirsutum HOM05D000026 ORTHO05D000094 1.8e-07 59.3 54 57.4
Gohir.D04G123000 Gossypium hirsutum HOM05D000026 ORTHO05D000094 1.8e-07 59.3 57 54.4
Gorai.002G256700 Gossypium raimondii HOM05D000026 ORTHO05D000094 1.8e-07 59.3 54 57.4
Gorai.012G105900 Gossypium raimondii HOM05D000026 ORTHO05D000094 1.8e-07 59.3 57 54.4
PSO339G2959 Papaver somniferum HOM05D000026 ORTHO05D000094 1.8e-07 59.3 47 63.8
Psat3g136680 Pisum sativum HOM05D000026 ORTHO05D000094 1.8e-07 59.3 58 50.0
Nn2g11202 Nelumbo nucifera HOM05D000026 ORTHO05D016400 2.3e-07 58.9 55 58.2
Phvul.010G015800 Phaseolus vulgaris HOM05D000026 ORTHO05D000094 2.3e-07 58.9 53 56.6
MSTRG.5643 Avicennia marina HOM05D000026 ORTHO05D000094 3.0e-07 58.5 79 43.0
Nitab4.5_0000722g0090 Nicotiana tabacum HOM05D000026 ORTHO05D000094 3.0e-07 58.5 53 58.5
Nitab4.5_0003394g0070 Nicotiana tabacum HOM05D000026 ORTHO05D000094 3.0e-07 58.5 53 58.5
Potri.008G058400 Populus trichocarpa HOM05D000026 ORTHO05D000094 3.0e-07 58.5 62 50.0
CAN.G324.17 Capsicum annuum HOM05D000026 ORTHO05D000094 3.9e-07 58.2 48 62.5
CsaV3_4G025210 Cucumis sativus L. HOM05D000026 ORTHO05D000094 3.9e-07 58.2 53 54.7
Manes.08G088500 Manihot esculenta HOM05D000026 ORTHO05D000094 3.9e-07 58.2 77 48.1
Potri.006G088400 Populus trichocarpa HOM05D000026 ORTHO05D000094 3.9e-07 58.2 57 54.4
QL11p019933 Quercus lobata HOM05D000026 ORTHO05D000094 3.9e-07 58.2 35 74.3
QL12p026549 Quercus lobata HOM05D000026 ORTHO05D000094 3.9e-07 58.2 35 74.3
Sabra08G0043000 Salix brachista HOM05D000026 ORTHO05D000094 3.9e-07 58.2 62 50.0
Sed0001598 Sechium edule HOM05D000026 ORTHO05D000094 3.9e-07 58.2 55 56.4
TPR.G34829 Trifolium pratense HOM05D000026 ORTHO05D000094 3.9e-07 58.2 53 56.6
Haze_20836 Corylus avellana HOM05D000026 ORTHO05D000094 6.7e-07 57.4 60 53.3
PGR031G2357 Punica granatum HOM05D000026 ORTHO05D000094 6.7e-07 57.4 56 55.4
CANSAT56G3329 Cannabis sativa HOM05D000026 ORTHO05D000094 8.8e-07 57.0 69 44.9
MD12G1147300 Malus domestica HOM05D000026 ORTHO05D000094 8.8e-07 57.0 70 44.3
Medtr5g035910 Medicago truncatula HOM05D000026 ORTHO05D000094 8.8e-07 57.0 88 40.9
Medtr7g063010 Medicago truncatula HOM05D000026 ORTHO05D000094 8.8e-07 57.0 57 49.1
Sopen10g034300 Solanum pennellii HOM05D000026 ORTHO05D000094 8.8e-07 57.0 37 70.3
Cpa.g.sc228.2 Carica papaya HOM05D000026 ORTHO05D000094 1.1e-06 56.6 63 49.2
Ca_07341_v3 Cicer arietinum L. HOM05D000026 ORTHO05D000094 1.1e-06 56.6 53 54.7
MELO3C003147.2 Cucumis melo HOM05D000026 ORTHO05D000094 1.5e-06 56.2 53 52.8
Glyma.03G069300 Glycine max HOM05D000026 ORTHO05D000094 1.5e-06 56.2 53 54.7
Gohir.D01G211100 Gossypium hirsutum HOM05D000026 ORTHO05D000094 1.5e-06 56.2 54 55.6
Medtr7g063030 Medicago truncatula HOM05D000026 ORTHO05D000094 1.5e-06 56.2 53 52.8
Psat2g112120 Pisum sativum HOM05D000026 ORTHO05D000094 1.5e-06 56.2 89 40.4
Nitab4.5_0000770g0130 Nicotiana tabacum HOM05D000026 ORTHO05D000094 2.0e-06 55.8 47 57.4
Actinidia11277 Actinidia chinensis HOM05D000026 ORTHO05D000094 2.6e-06 55.5 42 66.7
Eucgr.A01292 Eucalyptus grandis HOM05D000026 ORTHO05D000094 2.6e-06 55.5 57 52.6
Nn4g26231 Nelumbo nucifera HOM05D000026 ORTHO05D016400 2.6e-06 55.5 59 52.5
Peaxi162Scf00771g00032 Petunia axillaris HOM05D000026 ORTHO05D000094 2.6e-06 55.5 59 54.2
QL08p060836 Quercus lobata HOM05D000026 ORTHO05D000094 2.6e-06 55.5 75 46.7
Sed0019812 Sechium edule HOM05D000026 ORTHO05D000094 2.6e-06 55.5 59 49.2
vmacro10220 Vaccinium macrocarpon HOM05D000026 ORTHO05D000094 2.6e-06 55.5 75 48.0
Ca_08177_v3 Cicer arietinum L. HOM05D000026 ORTHO05D000094 3.3e-06 55.1 70 45.7
Potri.006G088600 Populus trichocarpa HOM05D000026 ORTHO05D000094 3.3e-06 55.1 57 52.6
Potri.006G088680 Populus trichocarpa HOM05D000026 ORTHO05D000094 3.3e-06 55.1 57 52.6
Prupe.6G259900 Prunus persica HOM05D000026 ORTHO05D000094 3.3e-06 55.1 66 50.0
Solyc10g084860.1 Solanum lycopersicum HOM05D000026 ORTHO05D000094 3.3e-06 55.1 37 67.6
CDE06G2037 Ceratophyllum demersum HOM05D000026 ORTHO05D000094 4.4e-06 54.7 59 52.5
Lj2g0016352 Lotus japonicus HOM05D000026 ORTHO05D000094 4.4e-06 54.7 53 54.7
Nn2g11196 Nelumbo nucifera HOM05D000026 ORTHO05D000094 4.4e-06 54.7 73 45.2
Oeu009487.1 Olea europaea HOM05D000026 ORTHO05D000094 4.4e-06 54.7 57 52.6
Prupe.6G261400 Prunus persica HOM05D000026 ORTHO05D000094 4.4e-06 54.7 65 47.7
Lalb_Chr19g0125221 Lupinus albus HOM05D000026 ORTHO05D000094 5.7e-06 54.3 53 50.9
PGSC0003DMG400011071 Solanum tuberosum HOM05D000026 ORTHO05D000094 5.7e-06 54.3 37 64.9
Dinv35570 Davidia involucrata HOM05D000026 ORTHO05D000094 7.4e-06 53.9 58 53.4
Peaxi162Scf00094g00094 Petunia axillaris HOM05D000026 ORTHO05D000094 7.4e-06 53.9 41 63.4
Sc11g0007810 Simmondsia chinensis HOM05D000026 ORTHO05D000094 7.4e-06 53.9 55 49.1
Actinidia11276 Actinidia chinensis HOM05D000026 ORTHO05D000094 9.7e-06 53.5 55 56.4
MSTRG.19071 Avicennia marina HOM05D000026 ORTHO05D000094 9.7e-06 53.5 53 54.7
EL10As1g23115 Beta vulgaris HOM05D000026 ORTHO05D000094 9.7e-06 53.5 60 51.7


User provided reference genes

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