Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR623G0116 Trochodendron aralioides HOM05D006202 ORTHO05D414173 8.7e-53 209.9 98 100.0
Ciclev10031726m.g Citrus clementina HOM05D006202 ORTHO05D008227 8.3e-11 70.5 35 91.4
Atru.chr11.2704 Acer truncatum HOM05D006202 ORTHO05D008227 1.1e-10 70.1 35 88.6
TAR369G0651 Trochodendron aralioides HOM05D006202 ORTHO05D008227 1.1e-10 70.1 35 88.6
TAR369G1105 Trochodendron aralioides HOM05D006202 ORTHO05D008227 1.1e-10 70.1 35 88.6
Prupe.1G561800 Prunus persica HOM05D006202 ORTHO05D008227 1.8e-10 69.3 35 88.6
Manes.10G152100 Manihot esculenta HOM05D006202 ORTHO05D008227 2.4e-10 68.9 35 85.7
SHI12244 Sapria himalayana HOM05D006202 ORTHO05D008227 2.4e-10 68.9 35 85.7
Nitab4.5_0010722g0010 Nicotiana tabacum HOM05D006202 ORTHO05D008227 3.1e-10 68.6 35 85.7
PSO384G0467 Papaver somniferum HOM05D006202 ORTHO05D008227 3.1e-10 68.6 35 82.9
Peaxi162Scf00402g00616 Petunia axillaris HOM05D006202 ORTHO05D008227 3.1e-10 68.6 35 85.7
PGSC0003DMG401028974 Solanum tuberosum HOM05D006202 ORTHO05D008227 3.1e-10 68.6 35 85.7
TWI73G0821 Tripterygium wilfordii HOM05D006202 ORTHO05D008227 3.1e-10 68.6 35 82.9
GSVIVG01001357001 Vitis vinifera HOM05D006202 ORTHO05D008227 3.1e-10 68.6 35 85.7
TPR.G16148 Trifolium pratense HOM05D006202 ORTHO05D008227 4.1e-10 68.2 35 85.7
EL10Ac3g06182 Beta vulgaris HOM05D006202 ORTHO05D008227 5.4e-10 67.8 35 85.7
CANSAT80G0703 Cannabis sativa HOM05D006202 ORTHO05D008227 5.4e-10 67.8 35 85.7
AUR62036652 Chenopodium quinoa HOM05D006202 ORTHO05D008227 5.4e-10 67.8 35 85.7
Ca_03201_v3 Cicer arietinum L. HOM05D006202 ORTHO05D008227 5.4e-10 67.8 35 85.7
ECA234G4350 Erigeron canadensis HOM05D006202 ORTHO05D008227 5.4e-10 67.8 35 82.9
Migut.B01400 Erythranthe guttata HOM05D006202 ORTHO05D008227 5.4e-10 67.8 35 85.7
Lj9C620G10 Lonicera japonica HOM05D006202 ORTHO05D008227 5.4e-10 67.8 35 85.7
Lj3g0005275 Lotus japonicus HOM05D006202 ORTHO05D008227 5.4e-10 67.8 35 85.7
Lalb_Chr01g0015151 Lupinus albus HOM05D006202 ORTHO05D008227 5.4e-10 67.8 35 85.7
MD02G1319400 Malus domestica HOM05D006202 ORTHO05D008227 5.4e-10 67.8 35 85.7
Medtr2g061710 Medicago truncatula HOM05D006202 ORTHO05D008227 5.4e-10 67.8 35 85.7
Rhsim03G0068600 Rhododendron simsii HOM05D006202 ORTHO05D008227 5.4e-10 67.8 35 85.7
vmacro21164 Vaccinium macrocarpon HOM05D006202 ORTHO05D008227 5.4e-10 67.8 35 85.7
MSTRG.28100 Avicennia marina HOM05D006202 ORTHO05D008227 7.0e-10 67.4 35 82.9
CAN.G129.48 Capsicum annuum HOM05D006202 ORTHO05D008227 7.0e-10 67.4 35 85.7
AUR62034625 Chenopodium quinoa HOM05D006202 ORTHO05D008227 7.0e-10 67.4 35 82.9
Cc02_g26930 Coffea canephora HOM05D006202 ORTHO05D008227 7.0e-10 67.4 35 82.9
Dinv43939 Davidia involucrata HOM05D006202 ORTHO05D008227 7.0e-10 67.4 35 85.7
FvH4_5g30330 Fragaria vesca HOM05D006202 ORTHO05D008227 7.0e-10 67.4 35 82.9
FAN08G1924 Fragaria x ananassa HOM05D006202 ORTHO05D008227 7.0e-10 67.4 35 82.9
Nitab4.5_0000468g0040 Nicotiana tabacum HOM05D006202 ORTHO05D008227 7.0e-10 67.4 35 85.7
Psat1g128920 Pisum sativum HOM05D006202 ORTHO05D008227 7.0e-10 67.4 35 82.9
SalBow5G5675 Salvia bowleyana HOM05D006202 ORTHO05D008227 7.0e-10 67.4 35 82.9
Solyc01g073730.4 Solanum lycopersicum HOM05D006202 ORTHO05D008227 7.0e-10 67.4 35 82.9
Sopen01g033340 Solanum pennellii HOM05D006202 ORTHO05D008227 7.0e-10 67.4 35 82.9
SGA_v2.0_scaffold5G03106 Striga asiatica HOM05D006202 ORTHO05D008227 7.0e-10 67.4 35 82.9
THA.LOC104815880 Tarenaya hassleriana HOM05D006202 ORTHO05D008227 7.0e-10 67.4 35 82.9
Ah.14g085700 Amaranthus hybridus HOM05D006202 ORTHO05D008227 9.1e-10 67.0 35 85.7
C03p21020 Brassica napus HOM05D000200 ORTHO05D000262 9.1e-10 67.0 35 82.9
BolC3t14483H Brassica oleracea HOM05D006202 ORTHO05D008227 9.1e-10 67.0 35 82.9
FAN04G1730 Fragaria x ananassa HOM05D006202 ORTHO05D008227 9.1e-10 67.0 35 80.0
Potri.001G230604 Populus trichocarpa HOM05D006202 ORTHO05D008227 9.1e-10 67.0 35 85.7
BcaC01g05926 Brassica carinata HOM05D006202 ORTHO05D008227 1.2e-09 66.6 35 82.9
A03p17940 Brassica napus HOM05D000200 ORTHO05D000262 1.2e-09 66.6 35 82.9
BraA03t11059Z Brassica rapa HOM05D006202 ORTHO05D008227 1.2e-09 66.6 35 82.9
Carub.0004s1327 Capsella rubella HOM05D006202 ORTHO05D008227 1.2e-09 66.6 35 82.9
CARHR125690 Cardamine hirsuta HOM05D006202 ORTHO05D008227 1.2e-09 66.6 35 82.9
AT2G31955 Arabidopsis thaliana HOM05D006202 ORTHO05D008227 1.6e-09 66.2 35 80.0
arahy.Tifrunner.gnm1.ann1.03K86Q Arachis hypogaea HOM05D006202 ORTHO05D008227 1.6e-09 66.2 35 80.0
arahy.Tifrunner.gnm1.ann1.Y9YBLC Arachis hypogaea HOM05D006202 ORTHO05D008227 1.6e-09 66.2 35 80.0
Cpa.g.sc189.4 Carica papaya HOM05D006202 ORTHO05D008227 1.6e-09 66.2 35 80.0
Haze_03268 Corylus avellana HOM05D006202 ORTHO05D008227 1.6e-09 66.2 35 82.9
Duzib168G0949 Durio zibethinus HOM05D006202 ORTHO05D008227 1.6e-09 66.2 35 82.9
Lsat_1_v5_gn_4_46560 Lactuca sativa HOM05D006202 ORTHO05D008227 1.6e-09 66.2 35 80.0
Oeu060701.1 Olea europaea HOM05D006202 ORTHO05D008227 1.6e-09 66.2 35 80.0
Thecc.09G200100 Theobroma cacao HOM05D006202 ORTHO05D008227 1.6e-09 66.2 35 82.9
Cfa010710 Carpinus fangiana HOM05D006202 ORTHO05D008227 2.0e-09 65.9 35 80.0
COL.COLO4_07529 Corchorus olitorius HOM05D006202 ORTHO05D008227 2.0e-09 65.9 35 80.0
Glyma.08G157800 Glycine max HOM05D006202 ORTHO05D008227 2.0e-09 65.9 35 82.9
Glyma.15G268400 Glycine max HOM05D006202 ORTHO05D008227 2.0e-09 65.9 35 82.9
Phvul.005G041900 Phaseolus vulgaris HOM05D006202 ORTHO05D008227 2.0e-09 65.9 35 82.9
Phvul.005G042000 Phaseolus vulgaris HOM05D006202 ORTHO05D008227 2.0e-09 65.9 35 82.9
Sed0014986 Sechium edule HOM05D006202 ORTHO05D008227 2.0e-09 65.9 35 82.9
Hund12940 Selenicereus undatus HOM05D006202 ORTHO05D008227 2.0e-09 65.9 35 82.9
Sc10g0005310 Simmondsia chinensis HOM05D006202 ORTHO05D008227 2.0e-09 65.9 35 80.0
Aa31LG5G5070 Aethionema arabicum HOM05D006202 ORTHO05D008227 2.7e-09 65.5 35 80.0
Aqoxy1G00030 Aquilegia oxysepala HOM05D006202 ORTHO05D008227 2.7e-09 65.5 35 82.9
ClCG09G003710 Citrullus lanatus HOM05D006202 ORTHO05D008227 2.7e-09 65.5 35 80.0
MELO3C023505.2 Cucumis melo HOM05D006202 ORTHO05D008227 2.7e-09 65.5 35 80.0
CsaV3_7G031490 Cucumis sativus L. HOM05D006202 ORTHO05D008227 2.7e-09 65.5 35 80.0
FAN13G0191 Fragaria x ananassa HOM05D006202 ORTHO05D008227 2.7e-09 65.5 35 80.0
FAN18G2168 Fragaria x ananassa HOM05D006202 ORTHO05D008227 2.7e-09 65.5 35 80.0
Os02g0258900 Oryza sativa ssp. japonica HOM05D006202 ORTHO05D008227 2.7e-09 65.5 35 77.1
Os12g0507000 Oryza sativa ssp. japonica HOM05D006202 ORTHO05D008227 2.7e-09 65.5 35 77.1
PSO339G0702 Papaver somniferum HOM05D006202 ORTHO05D008227 2.7e-09 65.5 35 80.0
QL04p001552 Quercus lobata HOM05D006202 ORTHO05D008227 2.7e-09 65.5 35 77.1
RcHm_v2.0_Chr1g0313251 Rosa chinensis HOM05D006202 ORTHO05D008227 2.7e-09 65.5 35 80.0
unitig_749.g13486 Utricularia gibba HOM05D006202 ORTHO05D008227 2.7e-09 65.5 35 80.0
AL4G27290 Arabidopsis lyrata HOM05D006202 ORTHO05D008227 3.5e-09 65.1 35 80.0
AL80U10060 Arabidopsis lyrata HOM05D006202 ORTHO05D008227 3.5e-09 65.1 35 80.0
Eucgr.A00275 Eucalyptus grandis HOM05D006202 ORTHO05D008227 3.5e-09 65.1 35 82.9
Thhalv10016791m.g Eutrema salsugineum HOM05D006202 ORTHO05D008227 3.5e-09 65.1 35 80.0
Potri.009G024100 Populus trichocarpa HOM05D006202 ORTHO05D008227 3.5e-09 65.1 35 80.0
Actinidia21584 Actinidia chinensis HOM05D006202 ORTHO05D008227 4.5e-09 64.7 35 77.1
CiPaw.02G012300 Carya illinoinensis HOM05D006202 ORTHO05D008227 4.5e-09 64.7 35 82.9
Sp4g14320 Schrenkiella parvula HOM05D006202 ORTHO05D008227 4.5e-09 64.7 35 80.0
CSS0029964 Camellia sinensis var. sinensis HOM05D006202 ORTHO05D008227 5.9e-09 64.3 35 80.0
CBR_g36677 Chara braunii HOM05D006202 ORTHO05D008227 5.9e-09 64.3 35 80.0
DCAR_001807 Daucus carota HOM05D006202 ORTHO05D008227 5.9e-09 64.3 35 77.1
HanXRQChr16g0520351 Helianthus annuus HOM05D006202 ORTHO05D008227 5.9e-09 64.3 35 77.1
MBI04_g33961_MAGBIO Magnolia biondii HOM05D006202 ORTHO05D008227 5.9e-09 64.3 35 77.1
Sabra09G0015400 Salix brachista HOM05D006202 ORTHO05D008227 5.9e-09 64.3 35 80.0
SEGI_40145 Sequoiadendron giganteum HOM05D006202 ORTHO05D008227 5.9e-09 64.3 35 77.1
Gohir.A08G008900 Gossypium hirsutum HOM05D006202 ORTHO05D008227 7.7e-09 63.9 35 80.0
Gorai.004G013400 Gossypium raimondii HOM05D006202 ORTHO05D008227 7.7e-09 63.9 35 80.0
Nn2g15679 Nelumbo nucifera HOM05D006202 ORTHO05D008227 7.7e-09 63.9 35 77.1
Migut.I00539 Erythranthe guttata HOM05D006202 ORTHO05D008227 1.0e-08 63.5 35 82.9
VMungo1080G0924 Vigna mungo HOM05D006202 ORTHO05D008227 1.7e-08 62.8 35 80.0
ATR0605G327 Amborella trichopoda HOM05D006202 ORTHO05D008227 2.9e-08 62.0 35 80.0
arahy.Tifrunner.gnm1.ann1.YK6119 Arachis hypogaea HOM05D006202 ORTHO05D008227 3.8e-08 61.6 35 77.1
Gohir.D08G018900 Gossypium hirsutum HOM05D006202 ORTHO05D008227 3.8e-08 61.6 35 74.3
Zm00001eb244230 Zea mays HOM05D006202 ORTHO05D008227 3.8e-08 61.6 35 74.3
Pp3c5_22480 Physcomitrium patens HOM05D006202 ORTHO05D008227 2.5e-07 58.9 35 77.1
Eucgr.A00079 Eucalyptus grandis HOM05D006202 ORTHO05D008227 5.5e-07 57.8 43 67.4
SMO361G0213 Selaginella moellendorffii HOM05D006202 ORTHO05D008227 5.5e-07 57.8 35 71.4
HPP92_023784 Vanilla planifolia HOM05D006202 ORTHO05D008227 5.5e-07 57.8 35 74.3
arahy.Tifrunner.gnm1.ann1.JS3HL2 Arachis hypogaea HOM05D006202 ORTHO05D008227 1.6e-06 56.2 29 79.3
MCO15G349 Micromonas commoda HOM05D006202 ORTHO05D008227 6.1e-06 54.3 35 65.7
Mapoly0045s0149 Marchantia polymorpha HOM05D006202 ORTHO05D008227 8.0e-06 53.9 35 68.6


User provided reference genes

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