Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR623G0096 Trochodendron aralioides HOM05D004475 ORTHO05D005235 6.1e-157 557.4 269 100.0
TAR369G1128 Trochodendron aralioides HOM05D004475 ORTHO05D005235 3.7e-21 106.3 56 94.6
arahy.Tifrunner.gnm1.ann1.65IVB9 Arachis hypogaea HOM05D004475 ORTHO05D005235 9.2e-20 101.7 129 45.7
Lj1A1123G21 Lonicera japonica HOM05D004475 ORTHO05D005235 1.2e-19 101.3 56 91.1
Manes.09G010600 Manihot esculenta HOM05D004475 ORTHO05D005235 1.6e-19 100.9 56 87.5
Rhsim03G0029800 Rhododendron simsii HOM05D004475 ORTHO05D005235 3.5e-19 99.8 91 62.6
Prupe.2G152500 Prunus persica HOM05D004475 ORTHO05D005235 4.6e-19 99.4 56 85.7
Lj2A388T27 Lonicera japonica HOM05D004475 ORTHO05D005235 5.9e-19 99.0 56 87.5
Nn7g36424 Nelumbo nucifera HOM05D004475 ORTHO05D005235 5.9e-19 99.0 56 87.5
QL07p004070 Quercus lobata HOM05D004475 ORTHO05D005235 7.8e-19 98.6 56 89.3
GSVIVG01005040001 Vitis vinifera HOM05D004475 ORTHO05D005235 7.8e-19 98.6 56 87.5
Cfa016767 Carpinus fangiana HOM05D004475 ORTHO05D005235 1.3e-18 97.8 56 85.7
vmacro21959 Vaccinium macrocarpon HOM05D004475 ORTHO05D005235 1.3e-18 97.8 56 82.1
MBI05_g34359_MAGBIO Magnolia biondii HOM05D004475 ORTHO05D005235 1.7e-18 97.4 56 85.7
MBI07_g06431_MAGBIO Magnolia biondii HOM05D003129 ORTHO05D000022 3.0e-18 96.7 56 85.7
PSO541G2072 Papaver somniferum HOM05D004475 ORTHO05D005235 3.0e-18 96.7 56 82.1
QL02p076199 Quercus lobata HOM05D004475 ORTHO05D005235 3.9e-18 96.3 55 89.1
QL07p004140 Quercus lobata HOM05D004475 ORTHO05D005235 3.9e-18 96.3 56 87.5
TWI74G0419 Tripterygium wilfordii HOM05D004475 ORTHO05D005235 3.9e-18 96.3 56 87.5
Dinv18682 Davidia involucrata HOM05D004475 ORTHO05D005235 5.0e-18 95.9 56 83.9
Phvul.001G128700 Phaseolus vulgaris HOM05D004475 ORTHO05D005235 5.0e-18 95.9 56 83.9
TWI53G0253 Tripterygium wilfordii HOM05D004475 ORTHO05D005235 5.0e-18 95.9 56 87.5
VMungo1383G1580 Vigna mungo HOM05D004475 ORTHO05D005235 5.0e-18 95.9 56 83.9
Haze_19778 Corylus avellana HOM05D004475 ORTHO05D005235 6.6e-18 95.5 55 85.5
FvH4_7g12800 Fragaria vesca HOM05D004475 ORTHO05D005235 6.6e-18 95.5 56 80.4
FAN06G2315 Fragaria x ananassa HOM05D004475 ORTHO05D005235 6.6e-18 95.5 56 80.4
FAN06G2651 Fragaria x ananassa HOM05D004475 ORTHO05D005235 6.6e-18 95.5 56 80.4
FAN10G0874 Fragaria x ananassa HOM05D004475 ORTHO05D005235 6.6e-18 95.5 56 82.1
Glyma.19G135000 Glycine max HOM05D004475 ORTHO05D005235 6.6e-18 95.5 56 80.4
Dinv39670 Davidia involucrata HOM05D004475 ORTHO05D005235 8.6e-18 95.1 56 83.9
Glyma.03G133200 Glycine max HOM05D004475 ORTHO05D005235 8.6e-18 95.1 56 80.4
Lj1g0003764 Lotus japonicus HOM05D004475 ORTHO05D005235 8.6e-18 95.1 56 80.4
SGA_v2.0_scaffold69G23128 Striga asiatica HOM05D004475 ORTHO05D005235 8.6e-18 95.1 61 75.4
CiPaw.10G036200 Carya illinoinensis HOM05D004475 ORTHO05D005235 1.1e-17 94.7 56 85.7
Potri.001G139800 Populus trichocarpa HOM05D004475 ORTHO05D005235 1.1e-17 94.7 56 82.1
TWI77G0736 Tripterygium wilfordii HOM05D004475 ORTHO05D005235 1.1e-17 94.7 56 87.5
Actinidia17673 Actinidia chinensis HOM05D004475 ORTHO05D005235 1.5e-17 94.4 56 82.1
Actinidia38137 Actinidia chinensis HOM05D004475 ORTHO05D005235 1.5e-17 94.4 56 83.9
FAN01G1920 Fragaria x ananassa HOM05D004475 ORTHO05D005235 1.5e-17 94.4 56 78.6
Potri.003G094300 Populus trichocarpa HOM05D004475 ORTHO05D005235 1.5e-17 94.4 56 80.4
PGSC0003DMG400012719 Solanum tuberosum HOM05D004475 ORTHO05D005235 1.5e-17 94.4 56 80.4
TPR.G32720 Trifolium pratense HOM05D004475 ORTHO05D005235 1.5e-17 94.4 56 80.4
PSO675G0454 Papaver somniferum HOM05D004475 ORTHO05D005235 1.9e-17 94.0 56 80.4
Cpa.g.sc182.27 Carica papaya HOM05D004475 ORTHO05D005235 2.5e-17 93.6 56 83.9
Ca_22428_v3 Cicer arietinum L. HOM05D004475 ORTHO05D005235 2.5e-17 93.6 56 78.6
RcHm_v2.0_Chr1g0351831 Rosa chinensis HOM05D004475 ORTHO05D005235 2.5e-17 93.6 56 78.6
MSTRG.10806 Avicennia marina HOM05D004475 ORTHO05D005235 3.3e-17 93.2 56 82.1
Medtr7g090890 Medicago truncatula HOM05D004475 ORTHO05D005235 3.3e-17 93.2 56 78.6
Nitab4.5_0000082g0290 Nicotiana tabacum HOM05D004475 ORTHO05D005235 3.3e-17 93.2 56 76.8
Nitab4.5_0010656g0010 Nicotiana tabacum HOM05D004475 ORTHO05D005235 3.3e-17 93.2 56 76.8
Oeu023134.1 Olea europaea HOM05D004475 ORTHO05D005235 3.3e-17 93.2 61 78.7
Sabra01G0108900 Salix brachista HOM05D004475 ORTHO05D005235 3.3e-17 93.2 56 82.1
A04p03220 Brassica napus HOM05D004475 ORTHO05D005235 4.3e-17 92.8 61 75.4
Sabra03G0063400 Salix brachista HOM05D004475 ORTHO05D005235 4.3e-17 92.8 56 75.0
SGA_v2.0_scaffold105G30365 Striga asiatica HOM05D004475 ORTHO05D005235 4.3e-17 92.8 72 66.7
MSTRG.6404 Avicennia marina HOM05D004475 ORTHO05D005235 5.6e-17 92.4 56 82.1
Migut.K00106 Erythranthe guttata HOM05D004475 ORTHO05D005235 7.3e-17 92.0 56 75.0
Eucgr.A02304 Eucalyptus grandis HOM05D004475 ORTHO05D005235 7.3e-17 92.0 55 80.0
COL.COLO4_31106 Corchorus olitorius HOM05D004475 ORTHO05D005235 9.5e-17 91.7 56 87.5
Duzib128G1477 Durio zibethinus HOM05D004475 ORTHO05D005235 1.2e-16 91.3 56 85.7
Gorai.003G086800 Gossypium raimondii HOM05D004475 ORTHO05D005235 1.2e-16 91.3 60 80.0
Lalb_Chr01g0017241 Lupinus albus HOM05D004475 ORTHO05D005235 1.2e-16 91.3 56 76.8
Peaxi162Scf00002g00359 Petunia axillaris HOM05D004475 ORTHO05D005235 1.2e-16 91.3 56 75.0
CAN.G1237.9 Capsicum annuum HOM05D004475 ORTHO05D005235 1.6e-16 90.9 56 76.8
Solyc04g016440.4 Solanum lycopersicum HOM05D004475 ORTHO05D005235 1.6e-16 90.9 56 76.8
PGSC0003DMG400008171 Solanum tuberosum HOM05D004475 ORTHO05D005235 1.6e-16 90.9 56 73.2
Thecc.04G085100 Theobroma cacao HOM05D004475 ORTHO05D005235 1.6e-16 90.9 56 83.9
BraA04t16044Z Brassica rapa HOM05D004475 ORTHO05D005235 2.1e-16 90.5 56 78.6
Sopen04g008540 Solanum pennellii HOM05D004475 ORTHO05D005235 2.1e-16 90.5 56 76.8
Peaxi162Scf00130g00932 Petunia axillaris HOM05D004475 ORTHO05D005235 2.8e-16 90.1 56 76.8
AL5G38770 Arabidopsis lyrata HOM05D004475 ORTHO05D005235 3.6e-16 89.7 56 78.6
BcaC07g40061 Brassica carinata HOM05D004475 ORTHO05D005235 3.6e-16 89.7 56 78.6
BcaC08g44832 Brassica carinata HOM05D004475 ORTHO05D005235 3.6e-16 89.7 56 78.6
A07p23330 Brassica napus HOM05D004475 ORTHO05D005235 3.6e-16 89.7 56 78.6
BraA07t29998Z Brassica rapa HOM05D004475 ORTHO05D005235 3.6e-16 89.7 56 78.6
Thhalv10006224m.g Eutrema salsugineum HOM05D004475 ORTHO05D005235 3.6e-16 89.7 56 78.6
SalBow6G6503 Salvia bowleyana HOM05D004475 ORTHO05D005235 3.6e-16 89.7 56 78.6
Carub.0001s3807 Capsella rubella HOM05D004475 ORTHO05D005235 4.7e-16 89.4 94 58.5
Gohir.A02G105902 Gossypium hirsutum HOM05D004475 ORTHO05D005235 4.7e-16 89.4 56 83.9
THA.LOC104824427 Tarenaya hassleriana HOM05D004475 ORTHO05D005235 4.7e-16 89.4 56 78.6
Aqoxy5G02252 Aquilegia oxysepala HOM05D004475 ORTHO05D005235 6.2e-16 89.0 56 78.6
A09p50200 Brassica napus HOM05D004475 ORTHO05D005235 6.2e-16 89.0 56 76.8
C08p32680 Brassica napus HOM05D004475 ORTHO05D005235 6.2e-16 89.0 56 76.8
BraA09t40470Z Brassica rapa HOM05D004475 ORTHO05D005235 6.2e-16 89.0 56 76.8
Nitab4.5_0000826g0170 Nicotiana tabacum HOM05D004475 ORTHO05D005235 6.2e-16 89.0 56 75.0
Solyc10g079260.2 Solanum lycopersicum HOM05D004475 ORTHO05D005235 6.2e-16 89.0 56 71.4
Sp5g05320 Schrenkiella parvula HOM05D004475 ORTHO05D005235 8.0e-16 88.6 56 76.8
AT3G57280 Arabidopsis thaliana HOM05D004475 ORTHO05D005235 1.1e-15 88.2 56 76.8
CANSAT80G2630 Cannabis sativa HOM05D004475 ORTHO05D005235 1.1e-15 88.2 116 46.6
Migut.J01712 Erythranthe guttata HOM05D004475 ORTHO05D005235 1.1e-15 88.2 55 74.5
C06p24380 Brassica napus HOM05D004475 ORTHO05D005235 1.4e-15 87.8 56 76.8
BolC6t37586H Brassica oleracea HOM05D004475 ORTHO05D005235 1.4e-15 87.8 56 76.8
Duzib093G1491 Durio zibethinus HOM05D004475 ORTHO05D005235 1.4e-15 87.8 56 82.1
BolC8t50880H Brassica oleracea HOM05D004475 ORTHO05D005235 1.8e-15 87.4 55 76.4
Gohir.D03G073000 Gossypium hirsutum HOM05D004475 ORTHO05D005235 1.8e-15 87.4 60 78.3
Oeu008174.1 Olea europaea HOM05D004475 ORTHO05D005235 1.8e-15 87.4 56 76.8
BcaC02g09925 Brassica carinata HOM05D004475 ORTHO05D005235 4.0e-15 86.3 56 73.2
C04p35100 Brassica napus HOM05D004475 ORTHO05D005235 4.0e-15 86.3 56 73.2
BolC4t25066H Brassica oleracea HOM05D004475 ORTHO05D005235 4.0e-15 86.3 56 73.2
CAN.G641.30 Capsicum annuum HOM05D004475 ORTHO05D005235 4.0e-15 86.3 56 67.9
Aa31LG10G12150 Aethionema arabicum HOM05D004475 ORTHO05D005235 5.2e-15 85.9 56 71.4
ATR0749G001 Amborella trichopoda HOM05D004475 ORTHO05D005235 6.8e-15 85.5 55 70.9
arahy.Tifrunner.gnm1.ann1.QEH0EE Arachis hypogaea HOM05D004475 ORTHO05D005235 6.8e-15 85.5 56 71.4
Carub.0005s2413 Capsella rubella HOM05D004475 ORTHO05D005235 6.8e-15 85.5 56 73.2
Ciclev10005778m.g Citrus clementina HOM05D004475 ORTHO05D005235 6.8e-15 85.5 56 80.4
Cc06_g18210 Coffea canephora HOM05D004475 ORTHO05D005235 6.8e-15 85.5 56 73.2
SalBow1G0186 Salvia bowleyana HOM05D004475 ORTHO05D005235 6.8e-15 85.5 55 78.2
arahy.Tifrunner.gnm1.ann1.AU6CR8 Arachis hypogaea HOM05D004475 ORTHO05D005235 8.9e-15 85.1 56 71.4
arahy.Tifrunner.gnm1.ann1.Y19QZX Arachis hypogaea HOM05D004475 ORTHO05D005235 8.9e-15 85.1 56 71.4
CARHR167480 Cardamine hirsuta HOM05D004475 ORTHO05D005235 8.9e-15 85.1 56 73.2
CSS0035330 Camellia sinensis var. sinensis HOM05D004475 ORTHO05D005235 1.2e-14 84.7 56 73.2
CSS0043412 Camellia sinensis var. sinensis HOM05D004475 ORTHO05D005235 5.8e-14 82.4 55 72.7
ECA247G2236 Erigeron canadensis HOM05D004475 ORTHO05D005235 5.8e-14 82.4 56 71.4
PGR004G0119 Punica granatum HOM05D004475 ORTHO05D005235 5.8e-14 82.4 56 73.2
Ah.04g151370 Amaranthus hybridus HOM05D004475 ORTHO05D005235 9.8e-14 81.6 56 66.1
ClCG04G003840 Citrullus lanatus HOM05D004475 ORTHO05D005235 9.8e-14 81.6 55 74.5
DCAR_013617 Daucus carota HOM05D004475 ORTHO05D005235 9.8e-14 81.6 56 67.9
HanXRQChr01g0008311 Helianthus annuus HOM05D004475 ORTHO05D005235 9.8e-14 81.6 55 70.9
Atru.chr1.1194 Acer truncatum HOM05D004475 ORTHO05D005235 2.9e-13 80.1 56 75.0
HanXRQChr10g0298201 Helianthus annuus HOM05D004475 ORTHO05D005235 2.9e-13 80.1 56 69.6
Sed0026196 Sechium edule HOM05D004475 ORTHO05D005235 2.9e-13 80.1 56 71.4
MELO3C026314.2 Cucumis melo HOM05D004475 ORTHO05D005235 3.7e-13 79.7 56 71.4
HanXRQChr08g0209421 Helianthus annuus HOM05D004475 ORTHO05D005235 4.9e-13 79.3 54 70.4
EL10Ac3g07152 Beta vulgaris HOM05D004475 ORTHO05D005235 6.4e-13 79.0 56 66.1
ECA240G3656 Erigeron canadensis HOM05D004475 ORTHO05D005235 6.4e-13 79.0 55 67.3
CsaV3_4G027790 Cucumis sativus L. HOM05D004475 ORTHO05D005235 1.1e-12 78.2 56 69.6
Aqoxy1G03236 Aquilegia oxysepala HOM05D004475 ORTHO05D005235 1.4e-12 77.8 56 69.6
BcaC02g09926 Brassica carinata HOM05D004475 ORTHO05D005235 1.4e-12 77.8 50 72.0
AUR62024523 Chenopodium quinoa HOM05D004475 ORTHO05D005235 5.4e-12 75.9 56 62.5
AUR62026115 Chenopodium quinoa HOM05D004475 ORTHO05D005235 5.4e-12 75.9 56 62.5
Lsat_1_v5_gn_5_161180 Lactuca sativa HOM05D004475 ORTHO05D005235 9.2e-12 75.1 55 65.5
Hund24650 Selenicereus undatus HOM05D004475 ORTHO05D005235 1.6e-11 74.3 120 40.0
Zm00001eb144750 Zea mays HOM05D000228 ORTHO05D015695 7.8e-11 72.0 88 48.9
Zm00001eb301150 Zea mays HOM05D004475 ORTHO05D005235 2.3e-10 70.5 56 64.3
unitig_26.g9059 Utricularia gibba HOM05D004475 ORTHO05D005235 3.0e-10 70.1 56 60.7
Thecc.05G146400 Theobroma cacao HOM05D004475 ORTHO05D005235 6.6e-10 68.9 73 58.9
Zm00001eb317650 Zea mays HOM05D004475 ORTHO05D005235 8.6e-10 68.6 56 64.3
Zm00001eb379540 Zea mays HOM05D004475 ORTHO05D005235 8.6e-10 68.6 56 64.3
HPP92_017986 Vanilla planifolia HOM05D004475 ORTHO05D005235 1.1e-09 68.2 56 58.9
Os06g0301100 Oryza sativa ssp. japonica HOM05D004475 ORTHO05D005235 2.5e-09 67.0 56 62.5
SHI12342 Sapria himalayana HOM05D004475 ORTHO05D005235 2.5e-09 67.0 56 60.7
Mapoly0006s0095 Marchantia polymorpha HOM05D004956 ORTHO05D006284 5.6e-09 65.9 56 53.6
Nn1g00933 Nelumbo nucifera HOM05D011113 ORTHO05D001339 8.1e-08 62.0 72 37.5
CSS0012266 Camellia sinensis var. sinensis HOM05D004475 ORTHO05D005235 3.1e-07 60.1 39 71.8
Nn3g19974 Nelumbo nucifera HOM05D011113 ORTHO05D001339 6.8e-07 58.9 74 33.8
AagrBONN_evm.TU.Sc2ySwM_362.797 Anthoceros agrestis HOM05D004956 ORTHO05D006284 1.5e-06 57.8 55 52.7
Nn1g06295 Nelumbo nucifera HOM05D011113 ORTHO05D001339 1.5e-06 57.8 56 41.1
Os04g0470300 Oryza sativa ssp. japonica HOM05D004475 ORTHO05D005235 2.6e-06 57.0 56 55.4
HPP92_026704 Vanilla planifolia HOM05D004475 ORTHO05D005235 3.4e-06 56.6 46 58.7
Zm00001eb424650 Zea mays HOM05D004475 ORTHO05D005235 7.5e-06 55.5 61 49.2


User provided reference genes

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