Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR623G0094 Trochodendron aralioides HOM05D006848 ORTHO05D008445 4.4e-114 414.8 241 100.0
TAR623G0130 Trochodendron aralioides HOM05D006848 ORTHO05D008445 2.4e-96 355.9 241 89.2
MBI01_g27616_MAGBIO Magnolia biondii HOM05D006848 ORTHO05D008445 6.0e-87 324.7 240 78.3
Hma1.2p1_0312F.1_g121500 Hydrangea macrophylla HOM05D006848 ORTHO05D008445 7.8e-87 324.3 243 77.4
Ciclev10032624m.g Citrus clementina HOM05D006848 ORTHO05D008445 3.0e-86 322.4 248 68.5
Oeu036185.1 Olea europaea HOM05D006848 ORTHO05D008445 6.6e-86 321.2 243 77.4
Eucgr.G03390 Eucalyptus grandis HOM05D006848 ORTHO05D008445 2.5e-85 319.3 243 67.1
vmacro13656 Vaccinium macrocarpon HOM05D006848 ORTHO05D008445 2.5e-85 319.3 239 74.5
Rhsim07G0054800 Rhododendron simsii HOM05D006848 ORTHO05D008445 5.6e-85 318.2 246 76.8
QL04p007215 Quercus lobata HOM05D006848 ORTHO05D008445 9.5e-85 317.4 243 77.0
Aqoxy3G03705 Aquilegia oxysepala HOM05D006848 ORTHO05D008445 1.2e-84 317.0 177 85.3
Ca_14368_v3 Cicer arietinum L. HOM05D006848 ORTHO05D008445 3.6e-84 315.5 181 84.5
Migut.B01319 Erythranthe guttata HOM05D006848 ORTHO05D008445 3.6e-84 315.5 245 73.9
Lalb_Chr01g0015361 Lupinus albus HOM05D006848 ORTHO05D008445 4.7e-84 315.1 240 70.0
Atru.chr11.2648 Acer truncatum HOM05D006848 ORTHO05D008445 6.2e-84 314.7 241 78.8
Sabra09G0046200 Salix brachista HOM05D006848 ORTHO05D008445 8.1e-84 314.3 240 70.0
Potri.009G062500 Populus trichocarpa HOM05D006848 ORTHO05D008445 1.1e-83 313.9 240 70.0
TPR.G12217 Trifolium pratense HOM05D006848 ORTHO05D008445 1.1e-83 313.9 180 82.8
Glyma.15G273300 Glycine max HOM05D006848 ORTHO05D008445 2.3e-83 312.8 236 69.5
CANSAT80G2127 Cannabis sativa HOM05D006848 ORTHO05D008445 3.1e-83 312.4 242 66.1
FvH4_7g00900 Fragaria vesca HOM05D006848 ORTHO05D008445 3.1e-83 312.4 180 84.4
Medtr3g028150 Medicago truncatula HOM05D006848 ORTHO05D008445 1.2e-82 310.5 177 83.6
DCAR_029663 Daucus carota HOM05D006848 ORTHO05D008445 1.5e-82 310.1 181 83.4
Glyma.08G154300 Glycine max HOM05D006848 ORTHO05D008445 2.0e-82 309.7 207 74.9
Psat5g204320 Pisum sativum HOM05D006848 ORTHO05D008445 2.6e-82 309.3 169 86.4
Sc10g0000020 Simmondsia chinensis HOM05D006848 ORTHO05D008445 2.6e-82 309.3 244 74.2
CiPaw.13G004400 Carya illinoinensis HOM05D006848 ORTHO05D008445 4.4e-82 308.5 241 75.9
Nn113s43373 Nelumbo nucifera HOM05D006848 ORTHO05D008445 4.4e-82 308.5 246 74.0
Nn2g15435 Nelumbo nucifera HOM05D006848 ORTHO05D008445 4.4e-82 308.5 246 74.0
CAN.G170.111 Capsicum annuum HOM05D006848 ORTHO05D008445 5.8e-82 308.1 245 69.4
VMungo1080G1360 Vigna mungo HOM05D006848 ORTHO05D008445 7.6e-82 307.8 177 82.5
EL10Ac2g03652 Beta vulgaris HOM05D006848 ORTHO05D008445 1.3e-81 307.0 244 67.2
PGR031G3843 Punica granatum HOM05D006848 ORTHO05D008445 1.3e-81 307.0 246 68.7
Eucgr.H02489 Eucalyptus grandis HOM05D006848 ORTHO05D008445 2.9e-81 305.8 252 68.3
Lj7A569T67 Lonicera japonica HOM05D006848 ORTHO05D008445 4.9e-81 305.1 169 85.2
Nitab4.5_0000634g0080 Nicotiana tabacum HOM05D006848 ORTHO05D008445 6.4e-81 304.7 181 81.2
ClCG09G004240 Citrullus lanatus HOM05D006848 ORTHO05D008445 8.4e-81 304.3 248 63.3
Thecc.01G412000 Theobroma cacao HOM05D006848 ORTHO05D008445 8.4e-81 304.3 249 67.9
Haze_03213 Corylus avellana HOM05D006848 ORTHO05D008445 1.1e-80 303.9 244 74.2
COL.COLO4_23924 Corchorus olitorius HOM05D006848 ORTHO05D008445 1.4e-80 303.5 246 64.6
FAN10G1997 Fragaria x ananassa HOM05D006848 ORTHO05D008445 1.4e-80 303.5 186 81.7
PSO384G0049 Papaver somniferum HOM05D006848 ORTHO05D008445 1.4e-80 303.5 182 81.9
Peaxi162Scf00347g00071 Petunia axillaris HOM05D006848 ORTHO05D008445 1.4e-80 303.5 249 68.3
Peaxi162Scf00428g00063 Petunia axillaris HOM05D006848 ORTHO05D008445 1.9e-80 303.1 181 82.3
Nitab4.5_0002477g0050 Nicotiana tabacum HOM05D006848 ORTHO05D008445 4.1e-80 302.0 181 80.1
CsaV3_7G031150 Cucumis sativus L. HOM05D006848 ORTHO05D008445 5.4e-80 301.6 243 63.4
Gohir.A08G053600 Gossypium hirsutum HOM05D006848 ORTHO05D008445 7.1e-80 301.2 179 79.9
Sopen01g034120 Solanum pennellii HOM05D006848 ORTHO05D008445 7.1e-80 301.2 177 81.9
Gohir.D08G063100 Gossypium hirsutum HOM05D006848 ORTHO05D008445 9.2e-80 300.8 181 79.0
Gorai.004G065300 Gossypium raimondii HOM05D006848 ORTHO05D008445 9.2e-80 300.8 181 79.0
Cc02_g27800 Coffea canephora HOM05D006848 ORTHO05D008445 1.2e-79 300.4 175 84.0
MD07G1008600 Malus domestica HOM05D006848 ORTHO05D008445 1.2e-79 300.4 179 80.4
PSO135G0340 Papaver somniferum HOM05D006848 ORTHO05D008445 1.2e-79 300.4 182 81.3
MELO3C023542.2 Cucumis melo HOM05D006848 ORTHO05D008445 1.6e-79 300.1 181 76.8
Solyc01g087040.2 Solanum lycopersicum HOM05D006848 ORTHO05D008445 1.6e-79 300.1 177 81.4
PGSC0003DMG400006872 Solanum tuberosum HOM05D006848 ORTHO05D008445 2.1e-79 299.7 243 67.5
Cpa.g.sc386.5 Carica papaya HOM05D006848 ORTHO05D008445 2.7e-79 299.3 242 66.5
Duzib138G1675 Durio zibethinus HOM05D006848 ORTHO05D008445 2.7e-79 299.3 181 78.5
Sed0006624 Sechium edule HOM05D006848 ORTHO05D008445 7.8e-79 297.7 246 61.0
SalBow5G3403 Salvia bowleyana HOM05D006848 ORTHO05D008445 1.0e-78 297.4 240 66.7
TWI09G1547 Tripterygium wilfordii HOM05D006848 ORTHO05D008445 1.0e-78 297.4 173 81.5
TWI53G1868 Tripterygium wilfordii HOM05D006848 ORTHO05D008445 1.3e-78 297.0 240 65.0
Carub.0005s3015 Capsella rubella HOM05D006848 ORTHO05D008445 8.6e-78 294.3 177 78.5
Lsat_1_v5_gn_1_107841 Lactuca sativa HOM05D006848 ORTHO05D008445 3.3e-77 292.4 244 74.2
THA.LOC104819691 Tarenaya hassleriana HOM05D006848 ORTHO05D008445 5.6e-77 291.6 181 75.7
CARHR291430 Cardamine hirsuta HOM05D006848 ORTHO05D008445 7.3e-77 291.2 174 78.2
AL5G46400 Arabidopsis lyrata HOM05D006848 ORTHO05D008445 9.6e-77 290.8 169 81.1
BcaC01g04883 Brassica carinata HOM05D006848 ORTHO05D008445 9.6e-77 290.8 175 78.3
BolC3t15604H Brassica oleracea HOM05D006848 ORTHO05D008445 9.6e-77 290.8 175 78.3
CDE05G1882 Ceratophyllum demersum HOM05D006848 ORTHO05D008445 2.1e-76 289.7 181 76.2
Phvul.005G020200 Phaseolus vulgaris HOM05D006848 ORTHO05D008445 2.1e-76 289.7 242 66.1
HanXRQChr01g0016151 Helianthus annuus HOM05D006848 ORTHO05D008445 6.2e-76 288.1 253 62.5
A03p27190 Brassica napus HOM05D006848 ORTHO05D008445 8.1e-76 287.7 175 77.7
BraA03t11932Z Brassica rapa HOM05D006848 ORTHO05D008445 8.1e-76 287.7 175 77.7
AUR62009377 Chenopodium quinoa HOM05D006848 ORTHO05D008445 8.1e-76 287.7 177 79.1
BcaB01g02988 Brassica carinata HOM05D006848 ORTHO05D008445 1.1e-75 287.3 174 78.2
unitig_750.g28451 Utricularia gibba HOM05D006848 ORTHO05D008445 1.4e-75 287.0 181 76.2
MD02G1313800 Malus domestica HOM05D006848 ORTHO05D008445 1.8e-75 286.6 243 67.5
arahy.Tifrunner.gnm1.ann1.27LE56 Arachis hypogaea HOM05D006848 ORTHO05D008445 2.4e-75 286.2 177 78.0
arahy.Tifrunner.gnm1.ann1.9ZN1DC Arachis hypogaea HOM05D006848 ORTHO05D008445 2.4e-75 286.2 177 78.0
Prupe.2G012000 Prunus persica HOM05D006848 ORTHO05D008445 1.7e-73 280.0 249 69.5
FAN01G1688 Fragaria x ananassa HOM05D006848 ORTHO05D008445 3.8e-73 278.9 180 77.2
RcHm_v2.0_Chr3g0473601 Rosa chinensis HOM05D006848 ORTHO05D008445 8.4e-73 277.7 161 86.3
ECA248G3622 Erigeron canadensis HOM05D006848 ORTHO05D008445 1.1e-72 277.3 243 64.2
ATR0605G006 Amborella trichopoda HOM05D006848 ORTHO05D008445 1.9e-72 276.6 175 75.4
SEGI_25651 Sequoiadendron giganteum HOM05D006848 ORTHO05D008445 1.0e-70 270.8 169 78.1
SGA_v2.0_scaffold167G38443 Striga asiatica HOM05D006848 ORTHO05D008445 1.0e-70 270.8 240 62.9
FAN06G1876 Fragaria x ananassa HOM05D006848 ORTHO05D008445 1.7e-70 270.0 175 77.1
AUR62023058 Chenopodium quinoa HOM05D006848 ORTHO05D008445 1.1e-69 267.3 254 59.1
AagrBONN_evm.TU.Sc2ySwM_228.3199 Anthoceros agrestis HOM05D006848 ORTHO05D008445 4.3e-69 265.4 181 70.2
Aa31LG10G17430 Aethionema arabicum HOM05D006848 ORTHO05D008445 6.2e-68 261.5 150 82.0
HPP92_007477 Vanilla planifolia HOM05D006848 ORTHO05D008445 6.2e-68 261.5 181 71.3
Zm00001eb034740 Zea mays HOM05D006848 ORTHO05D008445 8.1e-68 261.2 181 70.2
Lj1g0010524 Lotus japonicus HOM05D006848 ORTHO05D008445 1.8e-67 260.0 172 75.0
C03p32680 Brassica napus HOM05D006848 ORTHO05D008445 5.3e-67 258.5 156 78.8
Sp1g00010 Schrenkiella parvula HOM05D006848 ORTHO05D008445 1.5e-66 256.9 175 70.9
Sp5g00040 Schrenkiella parvula HOM05D006848 ORTHO05D008445 1.5e-66 256.9 175 70.9
SMO217G0004 Selaginella moellendorffii HOM05D006848 ORTHO05D008445 3.4e-66 255.8 174 67.8
SMO356G0122 Selaginella moellendorffii HOM05D006848 ORTHO05D008445 3.4e-66 255.8 174 67.8
Thhalv10006361m.g Eutrema salsugineum HOM05D006848 ORTHO05D008445 2.2e-65 253.1 178 69.7
Manes.10G144600 Manihot esculenta HOM05D006848 ORTHO05D008445 2.5e-61 239.6 208 69.7
Pp3c4_11800 Physcomitrium patens HOM05D006848 ORTHO05D008445 4.3e-61 238.8 174 64.4
Mapoly0075s0034 Marchantia polymorpha HOM05D006848 ORTHO05D008445 4.8e-60 235.3 176 63.1
Os08g0504500 Oryza sativa ssp. japonica HOM05D006848 ORTHO05D008445 6.2e-60 235.0 169 66.3
Actinidia36713 Actinidia chinensis HOM05D006848 ORTHO05D008445 1.4e-59 233.8 132 86.4
AT3G63540 Arabidopsis thaliana HOM05D006848 ORTHO05D008445 3.1e-59 232.6 138 78.3
Dinv43453 Davidia involucrata HOM05D006848 ORTHO05D008445 1.5e-58 230.3 200 76.0
CBR_g23941 Chara braunii HOM05D006848 ORTHO05D008445 7.9e-55 218.0 178 59.6
RcHm_v2.0_Chr1g0315791 Rosa chinensis HOM05D006848 ORTHO05D008445 1.9e-45 186.8 120 73.3
CDE05G3657 Ceratophyllum demersum HOM05D000031 ORTHO05D008445 7.4e-45 184.9 124 71.0
Hma1.2p1_0137F.1_g062450 Hydrangea macrophylla HOM05D006848 ORTHO05D008445 4.8e-44 182.2 124 73.4
Actinidia24670 Actinidia chinensis HOM05D006848 ORTHO05D008445 7.2e-40 168.3 105 81.9
MCO14G442 Micromonas commoda HOM05D006848 ORTHO05D008445 8.2e-28 128.3 176 40.9
SEGI_20764 Sequoiadendron giganteum HOM05D006848 ORTHO05D008445 5.0e-25 119.0 62 90.3
Cre03.g198850 Chlamydomonas reinhardtii HOM05D006848 ORTHO05D008445 6.1e-23 112.1 181 35.4
PRCOL_00004469 Prasinoderma coloniale HOM05D006848 ORTHO05D008445 7.7e-18 95.1 169 36.1
A04p00030 Brassica napus HOM05D006848 ORTHO05D008445 5.9e-10 68.9 56 57.1
MCO12G188 Micromonas commoda HOM05D006848 ORTHO05D008445 3.6e-07 59.7 176 30.7
HanXRQChr05g0160801 Helianthus annuus HOM05D006773 ORTHO05D008775 1.0e-06 58.2 152 29.6
Hund17393 Selenicereus undatus HOM05D006773 ORTHO05D008775 2.3e-06 57.0 152 28.9


User provided reference genes

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