Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR623G0045 Trochodendron aralioides HOM05D005413 ORTHO05D006536 5.4e-156 554.3 282 100.0
Nn2g14375 Nelumbo nucifera HOM05D005413 ORTHO05D006536 1.1e-111 407.1 282 75.2
MBI15_g31416_MAGBIO Magnolia biondii HOM05D005413 ORTHO05D006536 3.8e-101 372.1 282 68.8
GSVIVG01037530001 Vitis vinifera HOM05D005413 ORTHO05D006536 2.6e-94 349.4 283 65.0
Dinv18856 Davidia involucrata HOM05D005413 ORTHO05D006536 1.5e-92 343.6 283 62.9
Ciclev10028962m.g Citrus clementina HOM05D005413 ORTHO05D006536 1.8e-90 336.7 283 62.2
Actinidia37056 Actinidia chinensis HOM05D005413 ORTHO05D006536 2.3e-90 336.3 283 63.6
Dinv04422 Davidia involucrata HOM05D005413 ORTHO05D006536 8.8e-90 334.3 286 65.0
CSS0023574 Camellia sinensis var. sinensis HOM05D005413 ORTHO05D006536 2.2e-88 329.7 261 64.8
Prupe.6G147200 Prunus persica HOM05D005413 ORTHO05D006536 4.8e-88 328.6 284 62.3
Aqoxy1G00612 Aquilegia oxysepala HOM05D005413 ORTHO05D006536 8.3e-88 327.8 289 60.6
Atru.chr3.3078 Acer truncatum HOM05D005413 ORTHO05D006536 7.7e-86 321.2 283 60.8
Atru.chr3.3087 Acer truncatum HOM05D005413 ORTHO05D006536 7.7e-86 321.2 283 60.8
Duzib170G0305 Durio zibethinus HOM05D005413 ORTHO05D006536 2.2e-85 319.7 289 57.4
Thecc.09G267600 Theobroma cacao HOM05D005413 ORTHO05D006536 2.2e-85 319.7 290 58.3
Hma1.2p1_0101F.1_g049660 Hydrangea macrophylla HOM05D005413 ORTHO05D006536 2.9e-85 319.3 282 61.0
Duzib168G1403 Durio zibethinus HOM05D005413 ORTHO05D006536 8.5e-85 317.8 289 58.8
QL01p019216 Quercus lobata HOM05D005413 ORTHO05D006536 1.5e-84 317.0 319 55.5
Actinidia11676 Actinidia chinensis HOM05D005413 ORTHO05D006536 1.9e-84 316.6 282 60.3
CiPaw.14G092700 Carya illinoinensis HOM05D005413 ORTHO05D006536 2.7e-83 312.8 283 59.7
MD11G1174800 Malus domestica HOM05D005413 ORTHO05D006536 3.5e-78 295.8 294 56.1
Manes.11G103700 Manihot esculenta HOM05D005413 ORTHO05D006536 5.9e-78 295.0 287 57.1
Gorai.009G081500 Gossypium raimondii HOM05D005413 ORTHO05D006536 7.7e-78 294.7 289 55.0
Gohir.A05G077100 Gossypium hirsutum HOM05D005413 ORTHO05D006536 1.7e-77 293.5 289 54.3
vmacro14313 Vaccinium macrocarpon HOM05D005413 ORTHO05D006536 2.9e-77 292.7 340 50.9
Gohir.D05G079900 Gossypium hirsutum HOM05D005413 ORTHO05D006536 5.0e-77 292.0 289 54.7
MD03G1159500 Malus domestica HOM05D005413 ORTHO05D006536 8.6e-77 291.2 286 56.3
Hund06812 Selenicereus undatus HOM05D005413 ORTHO05D006536 2.5e-76 289.7 287 59.2
Hma1.2p1_0098F.1_g048260 Hydrangea macrophylla HOM05D005413 ORTHO05D006536 9.5e-76 287.7 282 57.4
CsaV3_6G038630 Cucumis sativus L. HOM05D005413 ORTHO05D006536 1.2e-75 287.3 283 55.8
Medtr4g050330 Medicago truncatula HOM05D005413 ORTHO05D006536 1.2e-75 287.3 289 54.0
MELO3C014525.2 Cucumis melo HOM05D005413 ORTHO05D006536 2.8e-75 286.2 283 55.8
ClCG02G022490 Citrullus lanatus HOM05D005413 ORTHO05D006536 3.6e-75 285.8 284 55.3
FvH4_3g26150 Fragaria vesca HOM05D005413 ORTHO05D006536 4.7e-75 285.4 254 59.1
Ca_19483_v3 Cicer arietinum L. HOM05D005413 ORTHO05D006536 6.1e-75 285.0 284 54.6
ATR1120G017 Amborella trichopoda HOM05D005413 ORTHO05D006536 5.2e-74 282.0 290 52.8
FAN11G2501 Fragaria x ananassa HOM05D005413 ORTHO05D006536 8.9e-74 281.2 257 58.4
TPR.G4599 Trifolium pratense HOM05D005413 ORTHO05D006536 1.2e-73 280.8 293 52.9
TWI79G1192 Tripterygium wilfordii HOM05D005413 ORTHO05D006536 2.6e-73 279.6 289 55.0
HPP92_015644 Vanilla planifolia HOM05D005413 ORTHO05D006536 2.6e-73 279.6 291 55.3
TAR633G2414 Trochodendron aralioides HOM05D005413 ORTHO05D006536 5.7e-73 278.5 219 68.5
Lj3g0006130 Lotus japonicus HOM05D005413 ORTHO05D006536 7.5e-73 278.1 283 53.7
Rhsim01G0199900 Rhododendron simsii HOM05D005413 ORTHO05D006536 1.3e-72 277.3 381 45.4
ECA238G0598 Erigeron canadensis HOM05D005413 ORTHO05D006536 1.7e-72 276.9 290 56.2
RcHm_v2.0_Chr5g0049091 Rosa chinensis HOM05D005413 ORTHO05D006536 2.2e-72 276.6 259 57.5
Rhsim01G0199600 Rhododendron simsii HOM05D005413 ORTHO05D006536 4.9e-72 275.4 394 43.9
FAN25G1874 Fragaria x ananassa HOM05D005413 ORTHO05D006536 5.4e-71 271.9 257 56.8
CSS0050484 Camellia sinensis var. sinensis HOM05D005413 ORTHO05D006536 3.5e-70 269.2 285 56.1
Eucgr.J00585 Eucalyptus grandis HOM05D005413 ORTHO05D006536 7.8e-70 268.1 283 52.7
Psat7g200680 Pisum sativum HOM05D005413 ORTHO05D006536 1.7e-69 266.9 287 50.9
Cfa010502 Carpinus fangiana HOM05D005413 ORTHO05D006536 1.9e-68 263.5 282 51.4
Potri.008G001700 Populus trichocarpa HOM05D005413 ORTHO05D006536 2.5e-68 263.1 286 54.5
Potri.008G015500 Populus trichocarpa HOM05D005413 ORTHO05D006536 1.6e-67 260.4 270 55.9
PSO384G0849 Papaver somniferum HOM05D005413 ORTHO05D006536 1.8e-66 256.9 320 50.6
PSO339G2181 Papaver somniferum HOM05D005413 ORTHO05D006536 1.5e-65 253.8 320 50.6
Sc09g0004800 Simmondsia chinensis HOM05D005413 ORTHO05D006536 2.6e-65 253.1 285 52.3
DCAR_018207 Daucus carota HOM05D005413 ORTHO05D006536 3.4e-65 252.7 283 49.1
FAN16G0400 Fragaria x ananassa HOM05D005413 ORTHO05D006536 3.4e-65 252.7 312 47.4
FAN16G2334 Fragaria x ananassa HOM05D005413 ORTHO05D006536 3.4e-65 252.7 312 47.4
PGR119G0748 Punica granatum HOM05D005413 ORTHO05D006536 3.4e-65 252.7 286 50.0
Lj2A950G18 Lonicera japonica HOM05D005413 ORTHO05D006536 9.8e-65 251.1 206 65.0
QL04p048808 Quercus lobata HOM05D005413 ORTHO05D006536 9.8e-65 251.1 373 43.2
Lalb_Chr19g0136161 Lupinus albus HOM05D005413 ORTHO05D006536 4.9e-64 248.8 285 52.6
Phvul.011G100200 Phaseolus vulgaris HOM05D005413 ORTHO05D006536 6.4e-64 248.4 284 52.8
Potri.010G244600 Populus trichocarpa HOM05D005413 ORTHO05D006536 1.1e-63 247.7 227 59.5
Haze_03431 Corylus avellana HOM05D005413 ORTHO05D006536 1.4e-63 247.3 267 52.1
AUR62024117 Chenopodium quinoa HOM05D005413 ORTHO05D006536 2.0e-62 243.4 270 52.2
arahy.Tifrunner.gnm1.ann1.K4CWT5 Arachis hypogaea HOM05D005413 ORTHO05D006536 7.8e-62 241.5 284 51.4
SEGI_03865 Sequoiadendron giganteum HOM05D005413 ORTHO05D006536 7.8e-62 241.5 311 48.9
Sabra08G0009400 Salix brachista HOM05D005413 ORTHO05D006536 1.0e-61 241.1 258 54.7
VMungo1127G2102 Vigna mungo HOM05D005413 ORTHO05D006536 1.0e-61 241.1 265 53.6
Lalb_Chr03g0028501 Lupinus albus HOM05D005413 ORTHO05D006536 1.7e-61 240.4 282 50.0
Nitab4.5_0000158g0110 Nicotiana tabacum HOM05D005413 ORTHO05D006536 2.3e-61 240.0 258 50.4
PGSC0003DMG400002998 Solanum tuberosum HOM05D005413 ORTHO05D006536 2.3e-61 240.0 242 55.4
arahy.Tifrunner.gnm1.ann1.C0JSMI Arachis hypogaea HOM05D005413 ORTHO05D006536 3.0e-61 239.6 284 50.7
DCAR_012252 Daucus carota HOM05D005413 ORTHO05D006536 5.0e-61 238.8 285 48.8
Sabra10G0191100 Salix brachista HOM05D005413 ORTHO05D006536 5.0e-61 238.8 355 44.8
COL.COLO4_00160 Corchorus olitorius HOM05D005413 ORTHO05D006536 2.5e-60 236.5 208 60.6
Oeu031446.2 Olea europaea HOM05D005413 ORTHO05D006536 3.3e-60 236.1 228 57.0
MSTRG.12398 Avicennia marina HOM05D005413 ORTHO05D006536 2.1e-59 233.4 261 52.9
Sopen11g029620 Solanum pennellii HOM05D005413 ORTHO05D006536 2.1e-59 233.4 242 54.5
Glyma.11G171773 Glycine max HOM05D005413 ORTHO05D006536 1.4e-58 230.7 296 48.3
Solyc11g071950.3 Solanum lycopersicum HOM05D005413 ORTHO05D006536 1.4e-58 230.7 237 54.4
Glyma.12G095900 Glycine max HOM05D005413 ORTHO05D006536 3.1e-58 229.6 286 50.0
FAN21G0466 Fragaria x ananassa HOM05D005413 ORTHO05D006536 1.2e-57 227.6 257 49.8
Peaxi162Scf00429g00512 Petunia axillaris HOM05D005413 ORTHO05D006536 7.5e-57 224.9 198 62.1
Cc01_g07840 Coffea canephora HOM05D005413 ORTHO05D006536 1.3e-56 224.2 201 59.2
Zm00001eb012330 Zea mays HOM05D005413 ORTHO05D006536 2.2e-56 223.4 294 44.9
Os03g0274700 Oryza sativa ssp. japonica HOM05D005413 ORTHO05D006536 2.9e-56 223.0 303 45.2
EL10Ac6g13493 Beta vulgaris HOM05D005413 ORTHO05D006536 4.9e-56 222.2 258 50.8
Thhalv10014324m.g Eutrema salsugineum HOM05D005413 ORTHO05D006536 7.1e-55 218.4 295 44.4
CDE04G1023 Ceratophyllum demersum HOM05D005413 ORTHO05D006536 1.6e-54 217.2 319 44.8
Thecc.10G119400 Theobroma cacao HOM05D005413 ORTHO05D006536 6.0e-54 215.3 283 48.1
Nitab4.5_0008364g0010 Nicotiana tabacum HOM05D005413 ORTHO05D006536 1.7e-53 213.8 220 53.6
Dinv33562 Davidia involucrata HOM05D005413 ORTHO05D006536 3.0e-53 213.0 178 61.2
Lj2C36T10 Lonicera japonica HOM05D005413 ORTHO05D006536 1.5e-52 210.7 294 43.5
Ah.03g136210 Amaranthus hybridus HOM05D005413 ORTHO05D006536 5.6e-52 208.8 260 48.8
HanXRQChr05g0137071 Helianthus annuus HOM05D005413 ORTHO05D006536 8.1e-51 204.9 280 50.7
Sp6g23150 Schrenkiella parvula HOM05D005413 ORTHO05D006536 8.1e-51 204.9 295 43.1
C03p12140 Brassica napus HOM05D005413 ORTHO05D006536 5.8e-49 198.7 294 44.2
CARHR191490 Cardamine hirsuta HOM05D005413 ORTHO05D006536 9.9e-49 198.0 298 42.3
Haze_03425 Corylus avellana HOM05D005413 ORTHO05D006536 4.9e-48 195.7 326 39.3
BcaC01g06609 Brassica carinata HOM05D005413 ORTHO05D006536 8.4e-48 194.9 294 43.5
BolC3t13687H Brassica oleracea HOM05D005413 ORTHO05D006536 8.4e-48 194.9 294 43.5
BraA03t10367Z Brassica rapa HOM05D005413 ORTHO05D006536 2.4e-47 193.4 294 43.2
Dinv03807 Davidia involucrata HOM05D005413 ORTHO05D006536 9.2e-47 191.4 164 65.2
CDE07G0886 Ceratophyllum demersum HOM05D005413 ORTHO05D006536 1.2e-46 191.0 286 44.4
A03p10550 Brassica napus HOM05D005413 ORTHO05D006536 2.7e-46 189.9 294 42.9
SEGI_29962 Sequoiadendron giganteum HOM05D005852 ORTHO05D000002 6.0e-46 188.7 296 40.9
unitig_899.g15382 Utricularia gibba HOM05D005413 ORTHO05D006536 6.6e-45 185.3 209 50.7
AUR62005613 Chenopodium quinoa HOM05D005413 ORTHO05D006536 1.9e-44 183.7 207 53.6
Migut.D02382 Erythranthe guttata HOM05D005413 ORTHO05D006536 1.2e-43 181.0 232 47.4
Oeu033267.1 Olea europaea HOM05D005413 ORTHO05D006536 2.8e-43 179.9 320 40.0
Sed0018758 Sechium edule HOM05D005413 ORTHO05D006536 1.4e-42 177.6 165 58.8
Aa31LG1G13390 Aethionema arabicum HOM05D005413 ORTHO05D006536 7.6e-41 171.8 302 39.4
AT5G22040 Arabidopsis thaliana HOM05D005413 ORTHO05D006536 1.3e-40 171.0 297 40.4
AL6G33000 Arabidopsis lyrata HOM05D005413 ORTHO05D006536 2.9e-40 169.9 296 39.2
Rhsim03G0094100 Rhododendron simsii HOM05D005413 ORTHO05D006536 2.9e-40 169.9 300 38.7
vmacro07276 Vaccinium macrocarpon HOM05D005413 ORTHO05D006536 2.9e-40 169.9 245 44.1
BcaB01g04747 Brassica carinata HOM05D005413 ORTHO05D006536 5.4e-39 165.6 284 40.5
THA.LOC104815083 Tarenaya hassleriana HOM05D005413 ORTHO05D006536 1.2e-38 164.5 295 40.7
SalBow6G6902 Salvia bowleyana HOM05D005413 ORTHO05D006536 2.7e-38 163.3 230 46.1
Carub.0006s1968 Capsella rubella HOM05D005413 ORTHO05D006536 2.3e-37 160.2 299 37.8
SGA_v2.0_scaffold22G09835 Striga asiatica HOM05D005413 ORTHO05D006536 1.9e-36 157.1 183 51.4
THA.LOC104810942 Tarenaya hassleriana HOM05D001091 ORTHO05D001020 1.3e-35 154.5 280 39.3
Lsat_1_v5_gn_2_106300 Lactuca sativa HOM05D005413 ORTHO05D006536 1.2e-30 137.9 301 39.2
Lj5g0017620 Lotus japonicus HOM05D005413 ORTHO05D006536 1.0e-29 134.8 255 38.0
Ca_10423_v3 Cicer arietinum L. HOM05D005413 ORTHO05D006536 1.7e-29 134.0 262 37.4
arahy.Tifrunner.gnm1.ann1.0IPW5R Arachis hypogaea HOM05D005413 ORTHO05D006536 3.9e-29 132.9 214 43.9
arahy.Tifrunner.gnm1.ann1.BD57S3 Arachis hypogaea HOM05D005413 ORTHO05D006536 6.6e-29 132.1 214 43.9
TPR.G10267 Trifolium pratense HOM05D005413 ORTHO05D006536 7.4e-28 128.6 214 40.7
Lalb_Chr21g0312751 Lupinus albus HOM05D005413 ORTHO05D006536 8.1e-27 125.2 238 39.9
AagrBONN_evm.TU.Sc2ySwM_344.2258 Anthoceros agrestis HOM05D004246 ORTHO05D005035 3.1e-26 123.2 318 32.1
Phvul.007G136700 Phaseolus vulgaris HOM05D005413 ORTHO05D006536 2.6e-25 120.2 186 44.1
Hma1.2p1_0298F.1_g117400 Hydrangea macrophylla HOM05D005413 ORTHO05D006536 3.8e-24 116.3 120 52.5
Medtr1g090350 Medicago truncatula HOM05D005413 ORTHO05D006536 6.4e-24 115.5 263 33.5
Dinv03808 Davidia involucrata HOM05D005413 ORTHO05D006536 1.1e-23 114.8 108 57.4
Mapoly0068s0092 Marchantia polymorpha HOM05D005852 ORTHO05D006688 4.2e-23 112.8 305 34.8
Oeu029208.1 Olea europaea HOM05D005413 ORTHO05D006536 4.6e-22 109.4 83 66.3
Cpa.g.sc33.125 Carica papaya HOM05D005413 ORTHO05D006536 4.8e-19 99.4 83 63.9
BcaNung07133 Brassica carinata HOM05D005413 ORTHO05D006536 3.8e-16 89.7 129 43.4
Haze_15139 Corylus avellana HOM05D005413 ORTHO05D006536 7.1e-15 85.5 86 50.0
SMO236G0022 Selaginella moellendorffii HOM05D017472 ORTHO05D006688 7.4e-12 75.5 95 45.3
AUR62005612 Chenopodium quinoa HOM05D005413 ORTHO05D006536 4.8e-11 72.8 62 53.2
Sed0023885 Sechium edule HOM05D005413 ORTHO05D006536 1.5e-09 67.8 82 45.1
CBR_g31172 Chara braunii HOM05D005852 ORTHO05D006688 7.6e-09 65.5 70 52.9
PGR044G1324 Punica granatum HOM05D003044 ORTHO05D001869 1.0e-08 65.1 69 50.7
BcaB05g22753 Brassica carinata HOM05D005413 ORTHO05D006536 9.3e-07 58.5 52 57.7
ATR0693G434 Amborella trichopoda HOM05D005852 ORTHO05D006688 6.1e-06 55.8 195 27.7


User provided reference genes

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