Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR622G1402 Trochodendron aralioides HOM05D006037 ORTHO05D007384 3.6e-260 901.0 428 100.0
TAR622G1007 Trochodendron aralioides HOM05D006037 ORTHO05D007384 2.4e-256 888.3 426 98.8
Nn3g17908 Nelumbo nucifera HOM05D006037 ORTHO05D007384 3.2e-192 675.2 426 72.1
Aqoxy3G00235 Aquilegia oxysepala HOM05D006037 ORTHO05D007384 1.3e-188 663.3 423 71.4
GSVIVG01011862001 Vitis vinifera HOM05D006037 ORTHO05D007384 1.2e-186 656.8 426 71.8
CSS0045711 Camellia sinensis var. sinensis HOM05D006037 ORTHO05D007384 7.6e-186 654.1 426 72.1
CSS0026176 Camellia sinensis var. sinensis HOM05D006037 ORTHO05D007384 1.4e-184 649.8 426 71.8
MD13G1039000 Malus domestica HOM05D006037 ORTHO05D007384 7.1e-184 647.5 423 70.4
Prupe.1G314400 Prunus persica HOM05D006037 ORTHO05D007384 9.3e-184 647.1 423 70.0
Ciclev10014910m.g Citrus clementina HOM05D006037 ORTHO05D007384 2.7e-183 645.6 427 70.0
RcHm_v2.0_Chr4g0434781 Rosa chinensis HOM05D006037 ORTHO05D007384 4.6e-183 644.8 423 68.3
MD16G1039700 Malus domestica HOM05D006037 ORTHO05D007384 7.9e-183 644.0 422 69.4
PSO017G5347 Papaver somniferum HOM05D006037 ORTHO05D007384 1.0e-182 643.7 430 73.0
PSO478G0980 Papaver somniferum HOM05D006037 ORTHO05D007384 1.1e-181 640.2 430 73.0
CiPaw.05G240100 Carya illinoinensis HOM05D006037 ORTHO05D007384 8.2e-180 634.0 423 70.2
FvH4_4g26975 Fragaria vesca HOM05D006037 ORTHO05D007384 5.3e-179 631.3 423 67.8
FAN12G3404 Fragaria x ananassa HOM05D006037 ORTHO05D007384 9.0e-179 630.6 423 67.6
Psat6g225720 Pisum sativum HOM05D006037 ORTHO05D007384 4.5e-178 628.2 426 68.5
Sabra10G0092100 Salix brachista HOM05D006037 ORTHO05D007384 1.7e-177 626.3 427 69.3
Atru.chr11.165 Acer truncatum HOM05D006037 ORTHO05D007384 5.0e-177 624.8 430 68.6
Manes.14G105200 Manihot esculenta HOM05D006037 ORTHO05D007384 5.0e-177 624.8 427 66.5
Haze_00627 Corylus avellana HOM05D006037 ORTHO05D007384 6.5e-177 624.4 490 63.3
arahy.Tifrunner.gnm1.ann1.NA36PT Arachis hypogaea HOM05D006037 ORTHO05D007384 3.2e-176 622.1 426 68.1
FAN22G1751 Fragaria x ananassa HOM05D006037 ORTHO05D007384 9.4e-176 620.5 423 66.9
MBI09_g07743_MAGBIO Magnolia biondii HOM05D006037 ORTHO05D007384 2.1e-175 619.4 427 67.9
Potri.010G122000 Populus trichocarpa HOM05D006037 ORTHO05D007384 4.6e-175 618.2 427 68.6
Rhsim09G0105100 Rhododendron simsii HOM05D006037 ORTHO05D007384 1.4e-174 616.7 426 69.7
Cc11_g09830 Coffea canephora HOM05D006037 ORTHO05D007384 2.3e-174 615.9 427 67.4
TPR.G4859 Trifolium pratense HOM05D006037 ORTHO05D007384 2.3e-174 615.9 424 67.5
Thecc.02G224800 Theobroma cacao HOM05D006037 ORTHO05D007384 3.0e-174 615.5 426 66.4
arahy.Tifrunner.gnm1.ann1.CBB0MY Arachis hypogaea HOM05D006037 ORTHO05D007384 3.9e-174 615.1 426 67.6
Glyma.20G118000 Glycine max HOM05D006037 ORTHO05D007384 8.8e-174 614.0 429 68.1
Duzib248G1272 Durio zibethinus HOM05D006037 ORTHO05D007384 1.5e-173 613.2 426 67.1
Phvul.007G029700 Phaseolus vulgaris HOM05D006037 ORTHO05D007384 1.9e-173 612.8 429 66.9
Lj5g0002773 Lotus japonicus HOM05D006037 ORTHO05D007384 4.3e-173 611.7 426 66.9
COL.COLO4_38215 Corchorus olitorius HOM05D006037 ORTHO05D007384 1.3e-172 610.1 426 66.2
Potri.010G122100 Populus trichocarpa HOM05D006037 ORTHO05D007384 2.2e-172 609.4 428 67.1
Lalb_Chr06g0165941 Lupinus albus HOM05D006037 ORTHO05D007384 4.8e-172 608.2 427 66.0
Gohir.A03G147800 Gossypium hirsutum HOM05D006037 ORTHO05D007384 1.4e-171 606.7 426 66.4
Eucgr.B02995 Eucalyptus grandis HOM05D006037 ORTHO05D007384 1.8e-171 606.3 428 65.7
PGR102G0142 Punica granatum HOM05D006037 ORTHO05D007384 2.4e-171 605.9 427 66.5
Medtr1g110300 Medicago truncatula HOM05D006037 ORTHO05D007384 3.1e-171 605.5 427 66.7
VMungo0720G2449 Vigna mungo HOM05D006037 ORTHO05D007384 2.9e-169 599.0 429 66.2
EL10Ac6g14338 Beta vulgaris HOM05D006037 ORTHO05D007384 5.0e-169 598.2 426 67.1
Gohir.D02G171000 Gossypium hirsutum HOM05D006037 ORTHO05D007384 8.5e-169 597.4 426 65.7
Sabra10G0092200 Salix brachista HOM05D006037 ORTHO05D007384 8.5e-169 597.4 428 66.1
CANSAT01G2894 Cannabis sativa HOM05D006037 ORTHO05D007384 1.1e-168 597.0 421 66.0
Gorai.005G192200 Gossypium raimondii HOM05D006037 ORTHO05D007384 3.2e-168 595.5 426 65.5
DCAR_007255 Daucus carota HOM05D006037 ORTHO05D007384 1.6e-167 593.2 425 66.4
Ca_11141_v3 Cicer arietinum L. HOM05D006037 ORTHO05D007384 2.6e-165 585.9 452 63.3
Ca_11146_v3 Cicer arietinum L. HOM05D006037 ORTHO05D007384 2.6e-165 585.9 452 63.3
Peaxi162Scf00753g00122 Petunia axillaris HOM05D006037 ORTHO05D007384 4.1e-163 578.6 427 64.6
Solyc05g009140.3 Solanum lycopersicum HOM05D006037 ORTHO05D007384 9.1e-163 577.4 427 64.2
MSTRG.7652 Avicennia marina HOM05D006037 ORTHO05D007384 4.5e-162 575.1 428 65.7
Actinidia14911 Actinidia chinensis HOM05D006037 ORTHO05D007384 5.0e-161 571.6 426 65.3
vmacro10580 Vaccinium macrocarpon HOM05D006037 ORTHO05D007384 5.0e-161 571.6 499 58.5
HanXRQChr17g0551931 Helianthus annuus HOM05D006037 ORTHO05D007384 1.1e-160 570.5 428 63.8
Sopen05g004860 Solanum pennellii HOM05D006037 ORTHO05D007384 1.9e-160 569.7 421 64.1
Nitab4.5_0001616g0090 Nicotiana tabacum HOM05D006037 ORTHO05D007384 9.4e-160 567.4 458 60.7
Nitab4.5_0005528g0030 Nicotiana tabacum HOM05D006037 ORTHO05D007384 6.1e-159 564.7 457 61.1
AUR62037303 Chenopodium quinoa HOM05D006037 ORTHO05D007384 1.0e-158 563.9 426 64.3
ECA246G3707 Erigeron canadensis HOM05D006037 ORTHO05D007384 1.4e-158 563.5 429 61.8
Lsat_1_v5_gn_3_57741 Lactuca sativa HOM05D006037 ORTHO05D007384 1.8e-158 563.1 428 62.6
CAN.G610.57 Capsicum annuum HOM05D006037 ORTHO05D007384 3.0e-158 562.4 430 63.3
AUR62002838 Chenopodium quinoa HOM05D006037 ORTHO05D007384 1.5e-157 560.1 426 63.8
SGA_v2.0_scaffold38G14964 Striga asiatica HOM05D006037 ORTHO05D000229 2.6e-157 559.3 421 62.9
SalBow8G4457 Salvia bowleyana HOM05D006037 ORTHO05D007384 8.2e-156 554.3 428 62.6
THA.LOC104821921 Tarenaya hassleriana HOM05D006037 ORTHO05D007384 3.1e-155 552.4 426 62.0
SalBow8G2496 Salvia bowleyana HOM05D006037 ORTHO05D007384 9.1e-155 550.8 428 62.4
AUR62037301 Chenopodium quinoa HOM05D006037 ORTHO05D007384 1.8e-150 536.6 542 52.0
AUR62002836 Chenopodium quinoa HOM05D006037 ORTHO05D007384 7.5e-149 531.2 426 62.7
Aa31LG7G9120 Aethionema arabicum HOM05D006037 ORTHO05D007384 2.4e-147 526.2 427 59.7
ATR1125G090 Amborella trichopoda HOM05D006037 ORTHO05D007384 4.5e-146 521.9 426 59.2
unitig_747.g21203 Utricularia gibba HOM05D006037 ORTHO05D007384 2.9e-145 519.2 422 61.1
Thhalv10007371m.g Eutrema salsugineum HOM05D006037 ORTHO05D007384 1.9e-144 516.5 426 58.5
Migut.L01043 Erythranthe guttata HOM05D006037 ORTHO05D007384 4.2e-144 515.4 426 59.4
CDE12G0065 Ceratophyllum demersum HOM05D006037 ORTHO05D007384 9.4e-144 514.2 443 54.6
Lj3C1012T17 Lonicera japonica HOM05D006037 ORTHO05D007384 2.1e-143 513.1 427 60.7
Carub.0001s2514 Capsella rubella HOM05D006037 ORTHO05D007384 2.7e-143 512.7 423 59.1
AT1G25375 Arabidopsis thaliana HOM05D006037 ORTHO05D007384 4.7e-143 511.9 426 58.7
Dinv21054 Davidia involucrata HOM05D006037 ORTHO05D007384 2.0e-141 506.5 329 72.9
Aa31LG7G9130 Aethionema arabicum HOM05D006037 ORTHO05D007384 5.7e-141 505.0 426 57.5
AL1G39950 Arabidopsis lyrata HOM05D006037 ORTHO05D007384 7.5e-141 504.6 426 57.0
BcaC05g26674 Brassica carinata HOM05D006037 ORTHO05D007384 7.5e-141 504.6 426 57.0
TWI31G0909 Tripterygium wilfordii HOM05D006037 ORTHO05D007384 1.7e-140 503.4 426 58.0
C05p25140 Brassica napus HOM05D006037 ORTHO05D007384 2.8e-140 502.7 426 57.3
A09p39240 Brassica napus HOM05D006037 ORTHO05D007384 4.8e-140 501.9 426 57.0
BolC5t31246H Brassica oleracea HOM05D006037 ORTHO05D007384 4.8e-140 501.9 426 57.0
BraA09t39423Z Brassica rapa HOM05D006037 ORTHO05D007384 4.8e-140 501.9 426 57.0
Cpa.g.sc65.52 Carica papaya HOM05D006037 ORTHO05D007384 8.6e-137 491.1 426 54.7
Os01g0133500 Oryza sativa ssp. japonica HOM05D006037 ORTHO05D007384 2.1e-135 486.5 430 54.2
Zm00001eb125200 Zea mays HOM05D006037 ORTHO05D007384 2.8e-135 486.1 426 53.8
PGSC0003DMG401014554 Solanum tuberosum HOM05D006037 ORTHO05D007384 5.8e-125 451.8 354 62.1
BcaC05g26470 Brassica carinata HOM05D006037 ORTHO05D007384 1.7e-124 450.3 426 53.1
Sc11g0003550 Simmondsia chinensis HOM05D006037 ORTHO05D007384 5.6e-120 435.3 282 70.9
QL01p040434 Quercus lobata HOM05D006037 ORTHO05D007384 1.9e-112 410.2 300 67.0
FAN07G1837 Fragaria x ananassa HOM05D006037 ORTHO05D007384 6.2e-111 405.2 293 63.5
CARHR026110 Cardamine hirsuta HOM05D006037 ORTHO05D007384 2.0e-109 400.2 356 56.5
Mapoly0042s0034 Marchantia polymorpha HOM05D006037 ORTHO05D007384 4.2e-99 365.9 442 42.3
Pp3c15_25940 Physcomitrium patens HOM05D006037 ORTHO05D007384 3.3e-88 329.7 434 40.1
AagrBONN_evm.TU.Sc2ySwM_117.146 Anthoceros agrestis HOM05D006037 ORTHO05D007384 1.4e-83 314.3 437 39.4
HPP92_008271 Vanilla planifolia HOM05D006037 ORTHO05D007384 1.6e-82 310.8 219 64.4
RcHm_v2.0_Chr5g0042931 Rosa chinensis HOM05D006037 ORTHO05D007384 9.3e-75 285.0 239 58.2
RcHm_v2.0_Chr7g0243441 Rosa chinensis HOM05D006037 ORTHO05D007384 1.2e-74 284.6 239 57.7
Ah.02g127690 Amaranthus hybridus HOM05D006037 ORTHO05D007384 2.4e-70 270.4 426 38.0
RcHm_v2.0_Chr6g0261541 Rosa chinensis HOM05D006037 ORTHO05D007384 1.5e-69 267.7 228 57.5
SMO164G0020 Selaginella moellendorffii HOM05D006037 ORTHO05D007384 8.4e-68 261.9 239 50.2
QL02p008150 Quercus lobata HOM05D006037 ORTHO05D007384 3.1e-62 243.4 215 57.7
QL01p040421 Quercus lobata HOM05D006037 ORTHO05D007384 7.9e-50 202.2 207 50.7
CBR_g162 Chara braunii HOM05D006037 ORTHO05D007384 8.8e-49 198.7 301 38.9
BcaC05g26471 Brassica carinata HOM05D006037 ORTHO05D007384 3.7e-47 193.4 178 53.9
Hma1.2p1_1024F.1_g249230 Hydrangea macrophylla HOM05D006037 ORTHO05D007384 2.7e-42 177.2 352 35.5
QL02p008246 Quercus lobata HOM05D006037 ORTHO05D007384 2.5e-27 127.5 104 59.6
SEGI_36031 Sequoiadendron giganteum HOM05D006037 ORTHO05D007384 1.8e-22 111.3 113 45.1
RcHm_v2.0_Chr2g0108931 Rosa chinensis HOM05D006037 ORTHO05D007384 2.9e-20 104.0 75 64.0
HPP92_008272 Vanilla planifolia HOM05D006037 ORTHO05D007384 7.2e-19 99.4 100 49.0
CSS0004694 Camellia sinensis var. sinensis HOM05D006037 ORTHO05D007384 1.8e-17 94.7 53 79.2
Hma1.2p1_1024F.1_g249220 Hydrangea macrophylla HOM05D006037 ORTHO05D007384 1.8e-17 94.7 48 85.4
CSS0019302 Camellia sinensis var. sinensis HOM05D006037 ORTHO05D007384 2.6e-16 90.9 53 77.4
CSS0027478 Camellia sinensis var. sinensis HOM05D006037 ORTHO05D007384 4.4e-16 90.1 53 75.5
CSS0028236 Camellia sinensis var. sinensis HOM05D006037 ORTHO05D007384 4.4e-16 90.1 53 75.5
CSS0047987 Camellia sinensis var. sinensis HOM05D006037 ORTHO05D007384 1.7e-15 88.2 53 77.4
SEGI_25624 Sequoiadendron giganteum HOM05D006037 ORTHO05D007384 2.2e-15 87.8 141 32.6
QL02p008273 Quercus lobata HOM05D006037 ORTHO05D007384 2.0e-13 81.3 39 89.7
QL02p008285 Quercus lobata HOM05D000178 ORTHO05D007384 2.7e-13 80.9 61 57.4
Oeu054976.1 Olea europaea HOM05D006037 ORTHO05D007384 1.6e-10 71.6 38 73.7
CSS0043972 Camellia sinensis var. sinensis HOM05D006037 ORTHO05D007384 1.7e-07 61.6 53 56.6
QL02p008170 Quercus lobata HOM05D006037 ORTHO05D007384 2.2e-07 61.2 100 38.0


User provided reference genes

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