Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR622G1382 Trochodendron aralioides HOM05D006540 ORTHO05D008202 1.5e-176 622.9 350 100.0
CiPaw.05G182700 Carya illinoinensis HOM05D006540 ORTHO05D008202 4.7e-125 451.8 350 71.4
Cfa009208 Carpinus fangiana HOM05D006540 ORTHO05D008202 2.9e-122 442.6 351 72.1
Dinv24788 Davidia involucrata HOM05D006540 ORTHO05D008202 6.0e-120 434.9 350 73.4
Atru.chr11.2104 Acer truncatum HOM05D006540 ORTHO05D008202 5.6e-118 428.3 353 68.3
Haze_12245 Corylus avellana HOM05D006540 ORTHO05D008202 8.0e-117 424.5 370 72.7
Cpa.g.sc33.16 Carica papaya HOM05D006540 ORTHO05D008202 3.4e-115 419.1 356 64.9
Hma1.2p1_0223F.1_g093990 Hydrangea macrophylla HOM05D006540 ORTHO05D008202 4.1e-113 412.1 379 63.9
ClCG05G025710 Citrullus lanatus HOM05D006540 ORTHO05D008202 9.2e-113 411.0 351 65.0
MD13G1101900 Malus domestica HOM05D006540 ORTHO05D008202 9.2e-113 411.0 357 65.3
Prupe.1G243900 Prunus persica HOM05D006540 ORTHO05D008202 1.0e-111 407.5 356 68.5
MD16G1102400 Malus domestica HOM05D006540 ORTHO05D008202 1.3e-111 407.1 357 63.9
RcHm_v2.0_Chr4g0432921 Rosa chinensis HOM05D006540 ORTHO05D008202 1.3e-111 407.1 360 66.4
PGR102G2745 Punica granatum HOM05D006540 ORTHO05D008202 1.5e-110 403.7 353 68.8
Manes.13G024900 Manihot esculenta HOM05D006540 ORTHO05D008202 3.3e-110 402.5 349 66.2
Eucgr.B03288 Eucalyptus grandis HOM05D006540 ORTHO05D008202 7.3e-110 401.4 357 64.7
TWI18G0987 Tripterygium wilfordii HOM05D006540 ORTHO05D008202 1.2e-109 400.6 353 67.4
vmacro16198 Vaccinium macrocarpon HOM05D006540 ORTHO05D008202 3.6e-109 399.1 358 64.2
Ciclev10032003m.g Citrus clementina HOM05D006540 ORTHO05D008202 6.2e-109 398.3 352 66.2
QL03p058139 Quercus lobata HOM05D006540 ORTHO05D008202 8.1e-109 397.9 406 61.1
FAN22G2305 Fragaria x ananassa HOM05D006540 ORTHO05D008202 2.3e-108 396.4 360 65.3
FvH4_4g25530 Fragaria vesca HOM05D006540 ORTHO05D008202 6.8e-108 394.8 360 65.0
FAN12G0822 Fragaria x ananassa HOM05D006540 ORTHO05D008202 6.8e-108 394.8 360 65.0
FAN07G1259 Fragaria x ananassa HOM05D006540 ORTHO05D008202 8.9e-108 394.4 360 64.7
SalBow2G2200 Salvia bowleyana HOM05D006540 ORTHO05D008202 2.0e-107 393.3 361 59.6
FAN17G1845 Fragaria x ananassa HOM05D006540 ORTHO05D008202 2.6e-107 392.9 360 65.0
Duzib268G1404 Durio zibethinus HOM05D006540 ORTHO05D008202 3.4e-107 392.5 354 62.7
Oeu059907.1 Olea europaea HOM05D006540 ORTHO05D008202 2.2e-106 389.8 363 63.1
Aqoxy3G01202 Aquilegia oxysepala HOM05D006540 ORTHO05D008202 6.4e-106 388.3 353 66.3
MSTRG.568 Avicennia marina HOM05D006540 ORTHO05D008202 1.4e-105 387.1 358 60.6
Gorai.002G186600 Gossypium raimondii HOM05D006540 ORTHO05D008202 1.9e-105 386.7 358 66.2
Aa31LG2G5960 Aethionema arabicum HOM05D006540 ORTHO05D008202 1.2e-104 384.0 358 60.6
Migut.K00595 Erythranthe guttata HOM05D006540 ORTHO05D008202 1.2e-104 384.0 359 59.3
Gohir.D01G150500 Gossypium hirsutum HOM05D006540 ORTHO05D008202 2.1e-104 383.3 358 65.9
CARHR147570 Cardamine hirsuta HOM05D006540 ORTHO05D008202 1.0e-103 380.9 359 60.4
BcaC06g33900 Brassica carinata HOM05D006540 ORTHO05D008202 3.0e-103 379.4 352 61.4
Lj6A811T79 Lonicera japonica HOM05D006540 ORTHO05D008202 3.0e-103 379.4 356 65.7
A06p41910 Brassica napus HOM05D006540 ORTHO05D008202 6.6e-103 378.3 356 60.7
BraA06t27110Z Brassica rapa HOM05D006540 ORTHO05D008202 6.6e-103 378.3 356 60.7
C07p35560 Brassica napus HOM05D006540 ORTHO05D008202 8.6e-103 377.9 352 61.6
BolC7t44080H Brassica oleracea HOM05D006540 ORTHO05D008202 8.6e-103 377.9 352 61.6
Actinidia37429 Actinidia chinensis HOM05D006540 ORTHO05D008202 4.3e-102 375.6 354 61.6
THA.LOC104825662 Tarenaya hassleriana HOM05D006540 ORTHO05D008202 8.1e-101 371.3 355 60.6
Sc04g0009450 Simmondsia chinensis HOM05D006540 ORTHO05D008202 2.4e-100 369.8 352 66.5
Rhsim12G0110600 Rhododendron simsii HOM05D006540 ORTHO05D008202 4.0e-100 369.0 360 59.7
Thhalv10004491m.g Eutrema salsugineum HOM05D006540 ORTHO05D008202 5.2e-100 368.6 361 58.2
Lj4g0023216 Lotus japonicus HOM05D006540 ORTHO05D008202 1.5e-99 367.1 352 62.2
Sp2g15690 Schrenkiella parvula HOM05D006540 ORTHO05D008202 1.5e-99 367.1 358 57.5
Glyma.17G134500 Glycine max HOM05D006540 ORTHO05D008202 7.6e-99 364.8 350 60.6
AL5G15370 Arabidopsis lyrata HOM05D006540 ORTHO05D008202 3.8e-98 362.5 356 58.1
Phvul.003G064400 Phaseolus vulgaris HOM05D006540 ORTHO05D008202 1.1e-97 360.9 352 57.1
Duzib248G0112 Durio zibethinus HOM05D006540 ORTHO05D008202 2.4e-97 359.8 353 62.3
Nitab4.5_0000007g0060 Nicotiana tabacum HOM05D006540 ORTHO05D008202 2.4e-97 359.8 362 61.6
vmacro01127 Vaccinium macrocarpon HOM05D006540 ORTHO05D008202 9.2e-97 357.8 358 60.6
PGSC0003DMG400018605 Solanum tuberosum HOM05D006540 ORTHO05D008202 2.1e-96 356.7 361 59.6
Actinidia15092 Actinidia chinensis HOM05D006540 ORTHO05D008202 2.7e-96 356.3 356 60.7
Nitab4.5_0003628g0010 Nicotiana tabacum HOM05D006540 ORTHO05D008202 2.7e-96 356.3 361 61.2
AT3G26580 Arabidopsis thaliana HOM05D006540 ORTHO05D008202 7.8e-96 354.8 357 57.4
arahy.Tifrunner.gnm1.ann1.LD9JWE Arachis hypogaea HOM05D006540 ORTHO05D008202 1.0e-95 354.4 356 60.1
Thecc.02G259400 Theobroma cacao HOM05D006540 ORTHO05D008202 1.3e-95 354.0 354 62.4
Cc11_g15700 Coffea canephora HOM05D006540 ORTHO05D008202 1.7e-95 353.6 363 57.3
arahy.Tifrunner.gnm1.ann1.NX3C69 Arachis hypogaea HOM05D006540 ORTHO05D008202 2.3e-95 353.2 356 59.8
Carub.0005s0457 Capsella rubella HOM05D006540 ORTHO05D008202 5.1e-95 352.1 355 58.9
DCAR_024432 Daucus carota HOM05D006540 ORTHO05D008202 5.1e-95 352.1 330 62.7
BcaC06g31063 Brassica carinata HOM05D006540 ORTHO05D008202 1.9e-94 350.1 356 55.3
Potri.013G090000 Populus trichocarpa HOM05D006540 ORTHO05D008202 1.2e-93 347.4 299 66.2
Sabra13G0070200 Salix brachista HOM05D006540 ORTHO05D008202 1.2e-93 347.4 300 65.7
Sopen05g008320 Solanum pennellii HOM05D006540 ORTHO05D008202 1.6e-93 347.1 364 59.9
CSS0000303 Camellia sinensis var. sinensis HOM05D006540 ORTHO05D008202 3.6e-93 345.9 365 62.2
CDE09G1037 Ceratophyllum demersum HOM05D006540 ORTHO05D008202 1.8e-92 343.6 354 56.2
Lalb_Chr05g0228421 Lupinus albus HOM05D006540 ORTHO05D008202 3.1e-92 342.8 350 62.0
Gohir.A01G159600 Gossypium hirsutum HOM05D006540 ORTHO05D008202 9.0e-92 341.3 358 60.6
COL.COLO4_24263 Corchorus olitorius HOM05D006540 ORTHO05D008202 3.4e-91 339.3 352 55.7
PSO017G4849 Papaver somniferum HOM05D006540 ORTHO05D008202 3.4e-91 339.3 365 55.9
Peaxi162Scf00128g00138 Petunia axillaris HOM05D006540 ORTHO05D008202 2.2e-90 336.7 366 54.9
CDE02G2769 Ceratophyllum demersum HOM05D006540 ORTHO05D008202 3.2e-89 332.8 354 55.6
CANSAT35G0572 Cannabis sativa HOM05D006540 ORTHO05D008202 9.3e-89 331.3 356 56.2
ATR0686G190 Amborella trichopoda HOM05D006540 ORTHO05D008202 1.2e-88 330.9 285 62.8
Medtr8g069450 Medicago truncatula HOM05D006540 ORTHO05D008202 2.1e-88 330.1 352 58.0
Nn4g22628 Nelumbo nucifera HOM05D006540 ORTHO05D008202 3.5e-88 329.3 178 88.2
EL10Ac6g13801 Beta vulgaris HOM05D006540 ORTHO05D008202 6.6e-87 325.1 361 53.2
CAN.G832.5 Capsicum annuum HOM05D006540 ORTHO05D008202 9.6e-86 321.2 364 56.3
MBI10_g13027_MAGBIO Magnolia biondii HOM05D006540 ORTHO05D008202 2.8e-85 319.7 391 55.5
PSO478G4529 Papaver somniferum HOM05D006540 ORTHO05D008202 6.2e-85 318.5 342 61.4
GSVIVG01004073001 Vitis vinifera HOM05D006540 ORTHO05D008202 1.1e-84 317.8 178 83.7
Psat4g116680 Pisum sativum HOM05D006540 ORTHO05D008202 3.1e-84 316.2 361 55.1
unitig_21.g20872 Utricularia gibba HOM05D006540 ORTHO05D008202 8.4e-82 308.1 359 52.1
Lsat_1_v5_gn_8_152220 Lactuca sativa HOM05D006540 ORTHO05D008202 5.4e-81 305.4 365 54.5
ECA233G5619 Erigeron canadensis HOM05D006540 ORTHO05D008202 9.3e-81 304.7 285 65.3
Rhsim12G0041000 Rhododendron simsii HOM05D006540 ORTHO05D008202 3.5e-80 302.8 433 47.6
Ca_22583_v3 Cicer arietinum L. HOM05D006540 ORTHO05D008202 2.3e-79 300.1 351 53.0
HanXRQChr08g0208131 Helianthus annuus HOM05D006540 ORTHO05D008202 3.3e-78 296.2 368 55.7
Ah.03g133040 Amaranthus hybridus HOM05D006540 ORTHO05D008202 1.1e-76 291.2 248 61.3
AUR62005459 Chenopodium quinoa HOM05D006540 ORTHO05D008202 2.6e-75 286.6 180 76.1
TAR374G0845 Trochodendron aralioides HOM05D006540 ORTHO05D008202 5.8e-75 285.4 280 64.3
AUR62024282 Chenopodium quinoa HOM05D006540 ORTHO05D008202 9.9e-75 284.6 367 49.9
HPP92_002022 Vanilla planifolia HOM05D006540 ORTHO05D008202 2.5e-70 270.0 262 61.1
Sed0005489 Sechium edule HOM05D006540 ORTHO05D008202 8.2e-69 265.0 281 59.4
VMungo0251G1250 Vigna mungo HOM05D006540 ORTHO05D008202 5.3e-68 262.3 284 54.9
TPR.G17765 Trifolium pratense HOM05D006540 ORTHO05D008202 6.9e-68 261.9 350 48.6
MELO3C011955.2 Cucumis melo HOM05D006540 ORTHO05D008202 1.1e-62 244.6 281 54.4
CsaV3_5G031170 Cucumis sativus L. HOM05D006540 ORTHO05D008202 2.5e-62 243.4 281 54.1
Zm00001eb096140 Zea mays HOM05D006540 ORTHO05D008202 7.7e-59 231.9 266 56.0
Os03g0428800 Oryza sativa ssp. japonica HOM05D006540 ORTHO05D008202 2.9e-58 229.9 182 62.6
BcaB01g00564 Brassica carinata HOM05D006540 ORTHO05D008202 3.0e-55 219.9 231 55.8
SEGI_37038 Sequoiadendron giganteum HOM05D006540 ORTHO05D008202 1.3e-53 214.5 173 58.4
Mapoly0037s0067 Marchantia polymorpha HOM05D006540 ORTHO05D008202 5.0e-50 202.6 263 49.4
AagrBONN_evm.TU.Sc2ySwM_340.367 Anthoceros agrestis HOM05D006540 ORTHO05D008202 2.5e-49 200.3 258 43.8
SMO347G0417 Selaginella moellendorffii HOM05D006540 ORTHO05D008202 2.7e-48 196.8 260 48.5
Pp3c27_6670 Physcomitrium patens HOM05D006540 ORTHO05D008202 1.4e-44 184.5 175 50.9
TAR625G0150 Trochodendron aralioides HOM05D006540 ORTHO05D008202 2.6e-30 137.1 98 73.5
BcaC06g33898 Brassica carinata HOM05D006540 ORTHO05D008202 5.0e-26 122.9 82 68.3
TAR623G1425 Trochodendron aralioides HOM05D000432 ORTHO05D000320 1.1e-20 105.1 93 63.4
CBR_g8379 Chara braunii HOM05D006540 ORTHO05D008202 1.8e-20 104.4 133 42.9
Cre12.g528050 Chlamydomonas reinhardtii HOM05D006540 ORTHO05D008202 7.0e-20 102.4 100 50.0
Oeu029879.1 Olea europaea HOM05D006540 ORTHO05D008202 6.6e-18 95.9 72 62.5
MCO07G599 Micromonas commoda HOM05D006540 ORTHO05D008202 1.1e-17 95.1 144 36.8
PRCOL_00004949 Prasinoderma coloniale HOM05D006540 ORTHO05D008202 2.8e-16 90.5 174 32.2
Solyc05g013480.4 Solanum lycopersicum HOM05D006540 ORTHO05D008202 3.7e-13 80.1 133 44.4
RcHm_v2.0_Chr5g0067811 Rosa chinensis HOM05D006540 ORTHO05D008202 1.4e-12 78.2 43 81.4
unitig_744.g24293 Utricularia gibba HOM05D006540 ORTHO05D008202 2.0e-11 74.3 44 72.7
QL04p066147 Quercus lobata HOM05D006540 ORTHO05D008202 2.0e-06 57.8 33 81.8


User provided reference genes

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