Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR622G1303 Trochodendron aralioides HOM05D005465 ORTHO05D006612 3.4e-58 228.0 109 100.0
TAR622G0582 Trochodendron aralioides HOM05D005465 ORTHO05D006612 1.2e-29 133.3 100 69.0
TAR371G0638 Trochodendron aralioides HOM05D005465 ORTHO05D006612 2.3e-25 119.0 70 77.1
Nn3g17466 Nelumbo nucifera HOM05D005465 ORTHO05D006612 1.4e-22 109.8 70 71.4
Nn4g23446 Nelumbo nucifera HOM05D005465 ORTHO05D006612 2.0e-21 105.9 70 67.1
CiPaw.11G054700 Carya illinoinensis HOM05D005465 ORTHO05D006612 2.6e-21 105.5 65 73.8
arahy.Tifrunner.gnm1.ann1.13IMLW Arachis hypogaea HOM05D005465 ORTHO05D006612 4.4e-21 104.8 71 66.2
MBI16_g10835_MAGBIO Magnolia biondii HOM05D005465 ORTHO05D006612 4.4e-21 104.8 79 64.6
Sed0023287 Sechium edule HOM05D005465 ORTHO05D006612 7.5e-21 104.0 66 71.2
PSO063G4354 Papaver somniferum HOM05D005465 ORTHO05D006612 2.2e-20 102.4 78 61.5
MD06G1226100 Malus domestica HOM05D005465 ORTHO05D006612 2.8e-20 102.1 76 63.2
MD14G1213000 Malus domestica HOM05D005465 ORTHO05D006612 2.8e-20 102.1 70 64.3
MELO3C002037.2 Cucumis melo HOM05D005465 ORTHO05D006612 8.3e-20 100.5 68 66.2
CsaV3_1G006060 Cucumis sativus L. HOM05D005465 ORTHO05D006612 8.3e-20 100.5 68 66.2
Glyma.17G079700 Glycine max HOM05D005465 ORTHO05D006612 1.4e-19 99.8 77 64.9
PSO782G3842 Papaver somniferum HOM05D005465 ORTHO05D006612 1.4e-19 99.8 70 62.9
CSS0002198 Camellia sinensis var. sinensis HOM05D005465 ORTHO05D006612 1.8e-19 99.4 76 61.8
Dinv34936 Davidia involucrata HOM05D005465 ORTHO05D006612 1.8e-19 99.4 68 63.2
VMungo1215G2862 Vigna mungo HOM05D005465 ORTHO05D006612 2.4e-19 99.0 77 63.6
Prupe.5G206300 Prunus persica HOM05D005465 ORTHO05D006612 3.1e-19 98.6 68 63.2
Zm00001eb370380 Zea mays HOM05D005465 ORTHO05D006612 5.4e-19 97.8 81 58.0
Manes.06G083500 Manihot esculenta HOM05D005465 ORTHO05D006612 7.0e-19 97.4 68 63.2
RcHm_v2.0_Chr7g0183221 Rosa chinensis HOM05D005465 ORTHO05D006612 7.0e-19 97.4 97 49.5
Zm00001eb152340 Zea mays HOM05D005465 ORTHO05D006612 7.0e-19 97.4 80 60.0
Duzib205G0879 Durio zibethinus HOM05D005465 ORTHO05D006612 9.2e-19 97.1 69 63.8
Glyma.05G020100 Glycine max HOM05D005465 ORTHO05D006612 9.2e-19 97.1 77 62.3
Hma1.2p1_0481F.1_g162260 Hydrangea macrophylla HOM05D005465 ORTHO05D006612 9.2e-19 97.1 68 64.7
Hma1.2p1_0481F.1_g162270 Hydrangea macrophylla HOM05D005465 ORTHO05D006612 9.2e-19 97.1 68 64.7
Haze_07739 Corylus avellana HOM05D005465 ORTHO05D006612 1.2e-18 96.7 68 63.2
ClCG04G011730 Citrullus lanatus HOM05D005465 ORTHO05D006612 1.6e-18 96.3 68 61.8
Duzib084G0509 Durio zibethinus HOM05D005465 ORTHO05D006612 2.7e-18 95.5 69 63.8
Gohir.A03G070600 Gossypium hirsutum HOM05D005465 ORTHO05D006612 3.5e-18 95.1 69 62.3
Gohir.D03G097000 Gossypium hirsutum HOM05D005465 ORTHO05D006612 3.5e-18 95.1 69 62.3
Gorai.003G101800 Gossypium raimondii HOM05D005465 ORTHO05D006612 3.5e-18 95.1 69 62.3
AUR62038681 Chenopodium quinoa HOM05D005465 ORTHO05D006612 4.5e-18 94.7 100 47.0
Rhsim08G0075200 Rhododendron simsii HOM05D005465 ORTHO05D006612 4.5e-18 94.7 76 60.5
SHI17457 Sapria himalayana HOM05D005465 ORTHO05D006612 4.5e-18 94.7 97 49.5
ECA232G0503 Erigeron canadensis HOM05D005465 ORTHO05D006612 5.9e-18 94.4 76 60.5
Lsat_1_v5_gn_4_171900 Lactuca sativa HOM05D005465 ORTHO05D006612 1.0e-17 93.6 76 59.2
Phvul.003G183800 Phaseolus vulgaris HOM05D005465 ORTHO05D006612 1.0e-17 93.6 77 61.0
Os01g0763300 Oryza sativa ssp. japonica HOM05D005465 ORTHO05D006612 1.3e-17 93.2 80 56.2
Thecc.03G103400 Theobroma cacao HOM05D005465 ORTHO05D006612 1.3e-17 93.2 69 62.3
Cfa019348 Carpinus fangiana HOM05D005465 ORTHO05D006612 1.7e-17 92.8 68 60.3
AUR62018194 Chenopodium quinoa HOM05D005465 ORTHO05D006612 1.7e-17 92.8 79 55.7
TPR.G2036 Trifolium pratense HOM05D005465 ORTHO05D006612 1.7e-17 92.8 68 63.2
Cpa.g.sc746.2 Carica papaya HOM05D005465 ORTHO05D006612 2.3e-17 92.4 79 55.7
Rhsim10G0048500 Rhododendron simsii HOM05D005465 ORTHO05D006612 2.9e-17 92.0 62 66.1
CDE02G4042 Ceratophyllum demersum HOM05D005465 ORTHO05D006612 3.8e-17 91.7 68 58.8
COL.COLO4_24335 Corchorus olitorius HOM05D005465 ORTHO05D006612 3.8e-17 91.7 69 59.4
Gohir.A09G243500 Gossypium hirsutum HOM05D005465 ORTHO05D006612 3.8e-17 91.7 69 59.4
DCAR_011037 Daucus carota HOM05D005465 ORTHO05D006612 5.0e-17 91.3 76 57.9
Hma1.2p1_0029F.1_g018040 Hydrangea macrophylla HOM05D005465 ORTHO05D006612 5.0e-17 91.3 66 62.1
Rhsim10G0047800 Rhododendron simsii HOM05D005465 ORTHO05D006612 5.0e-17 91.3 68 61.8
FvH4_5g13720 Fragaria vesca HOM05D005465 ORTHO05D006612 8.6e-17 90.5 97 45.4
FAN18G4042 Fragaria x ananassa HOM05D005465 ORTHO05D006612 8.6e-17 90.5 97 45.4
Actinidia26253 Actinidia chinensis HOM05D005465 ORTHO05D006612 1.1e-16 90.1 68 58.8
Sc14g0006350 Simmondsia chinensis HOM05D005465 ORTHO05D006612 1.1e-16 90.1 71 60.6
AT5G08060 Arabidopsis thaliana HOM05D005465 ORTHO05D006612 1.5e-16 89.7 64 62.5
Gorai.006G268200 Gossypium raimondii HOM05D005465 ORTHO05D006612 1.5e-16 89.7 69 58.0
SGA_v2.0_scaffold52G19131 Striga asiatica HOM05D005465 ORTHO05D006612 1.9e-16 89.4 76 57.9
Aqoxy3G03677 Aquilegia oxysepala HOM05D005465 ORTHO05D006612 2.5e-16 89.0 68 54.4
FAN08G0639 Fragaria x ananassa HOM05D005465 ORTHO05D006612 2.5e-16 89.0 78 52.6
Nitab4.5_0008370g0030 Nicotiana tabacum HOM05D005465 ORTHO05D006612 2.5e-16 89.0 76 57.9
Ca_21764_v3 Cicer arietinum L. HOM05D005465 ORTHO05D006612 3.3e-16 88.6 65 63.1
Eucgr.K02534 Eucalyptus grandis HOM05D005465 ORTHO05D006612 3.3e-16 88.6 70 55.7
TWI81G0357 Tripterygium wilfordii HOM05D005465 ORTHO05D006612 3.3e-16 88.6 76 56.6
Carub.0006s0695 Capsella rubella HOM05D005465 ORTHO05D006612 4.3e-16 88.2 64 60.9
FAN13G0353 Fragaria x ananassa HOM05D005465 ORTHO05D006612 4.3e-16 88.2 97 44.3
BcaB05g21584 Brassica carinata HOM05D005465 ORTHO05D006612 7.3e-16 87.4 64 59.4
AL6G18430 Arabidopsis lyrata HOM05D005465 ORTHO05D006612 9.5e-16 87.0 64 60.9
Medtr4g109650 Medicago truncatula HOM05D005465 ORTHO05D006612 9.5e-16 87.0 68 58.8
Solyc10g082064.1 Solanum lycopersicum HOM05D005465 ORTHO05D006612 9.5e-16 87.0 76 55.3
PGSC0003DMG400026569 Solanum tuberosum HOM05D005465 ORTHO05D006612 9.5e-16 87.0 76 55.3
Nitab4.5_0000212g0270 Nicotiana tabacum HOM05D005465 ORTHO05D006612 1.2e-15 86.7 76 56.6
Psat4g047600 Pisum sativum HOM05D005465 ORTHO05D006612 1.2e-15 86.7 68 60.3
Peaxi162Scf00991g00013 Petunia axillaris HOM05D005465 ORTHO05D006612 1.6e-15 86.3 76 55.3
A10p28580 Brassica napus HOM05D005465 ORTHO05D006612 2.1e-15 85.9 64 57.8
BolC9t59633H Brassica oleracea HOM05D005465 ORTHO05D006612 2.1e-15 85.9 64 57.8
Lalb_Chr13g0302801 Lupinus albus HOM05D005465 ORTHO05D006612 2.1e-15 85.9 95 47.4
Sp6g34890 Schrenkiella parvula HOM05D005465 ORTHO05D006612 2.1e-15 85.9 64 57.8
BcaB01g05639 Brassica carinata HOM05D005465 ORTHO05D006612 2.8e-15 85.5 64 57.8
BcaB08g37294 Brassica carinata HOM05D005465 ORTHO05D006612 2.8e-15 85.5 64 57.8
A03p03570 Brassica napus HOM05D005465 ORTHO05D006612 2.8e-15 85.5 64 57.8
C09p68870 Brassica napus HOM05D005465 ORTHO05D006612 2.8e-15 85.5 64 57.8
BraA03t09707Z Brassica rapa HOM05D005465 ORTHO05D006612 2.8e-15 85.5 64 57.8
Migut.H00618 Erythranthe guttata HOM05D005465 ORTHO05D006612 2.8e-15 85.5 102 45.1
Nitab4.5_0010535g0020 Nicotiana tabacum HOM05D005465 ORTHO05D006612 2.8e-15 85.5 76 53.9
SGA_v2.0_scaffold4G02379 Striga asiatica HOM05D005465 ORTHO05D006612 2.8e-15 85.5 76 55.3
EL10Ac2g03144 Beta vulgaris HOM05D005465 ORTHO05D006612 4.7e-15 84.7 79 51.9
BolC3t12939H Brassica oleracea HOM05D005465 ORTHO05D006612 4.7e-15 84.7 64 56.2
Potri.004G123700 Populus trichocarpa HOM05D005465 ORTHO05D006612 4.7e-15 84.7 97 48.5
Sopen02g016050 Solanum pennellii HOM05D005465 ORTHO05D006612 4.7e-15 84.7 63 58.7
THA.LOC104801135 Tarenaya hassleriana HOM05D005465 ORTHO05D006612 4.7e-15 84.7 62 59.7
BcaB08g37291 Brassica carinata HOM05D005465 ORTHO05D006612 6.1e-15 84.3 64 56.2
BraA10t44907Z Brassica rapa HOM05D005465 ORTHO05D006612 6.1e-15 84.3 64 56.2
CARHR205120 Cardamine hirsuta HOM05D005465 ORTHO05D006612 6.1e-15 84.3 64 54.7
Thhalv10015010m.g Eutrema salsugineum HOM05D005465 ORTHO05D006612 6.1e-15 84.3 64 56.2
Lj4g0014841 Lotus japonicus HOM05D005465 ORTHO05D006612 8.0e-15 84.0 63 61.9
Rhsim10G0050100 Rhododendron simsii HOM05D005465 ORTHO05D006612 8.0e-15 84.0 62 61.3
Atru.chr9.555 Acer truncatum HOM05D005465 ORTHO05D006612 1.0e-14 83.6 70 55.7
Actinidia17587 Actinidia chinensis HOM05D005465 ORTHO05D006612 1.0e-14 83.6 62 58.1
Aa31LG3G18480 Aethionema arabicum HOM05D005465 ORTHO05D006612 1.0e-14 83.6 54 68.5
BraA02t04941Z Brassica rapa HOM05D005465 ORTHO05D006612 1.8e-14 82.8 64 54.7
Nitab4.5_0005910g0030 Nicotiana tabacum HOM05D005465 ORTHO05D006612 1.8e-14 82.8 97 43.3
Solyc02g088930.4 Solanum lycopersicum HOM05D005465 ORTHO05D006612 1.8e-14 82.8 90 44.4
Sopen02g033620 Solanum pennellii HOM05D005465 ORTHO05D006612 1.8e-14 82.8 90 44.4
PGSC0003DMG400001360 Solanum tuberosum HOM05D005465 ORTHO05D006612 1.8e-14 82.8 90 44.4
unitig_899.g15102 Utricularia gibba HOM05D005465 ORTHO05D006612 2.3e-14 82.4 73 56.2
Cc07_g04290 Coffea canephora HOM05D005465 ORTHO05D006612 4.0e-14 81.6 75 52.0
Peaxi162Scf00166g00046 Petunia axillaris HOM05D005465 ORTHO05D006612 5.2e-14 81.3 98 39.8
PGSC0003DMG400035500 Solanum tuberosum HOM05D005465 ORTHO05D006612 8.9e-14 80.5 86 45.3
Ciclev10022497m.g Citrus clementina HOM05D005465 ORTHO05D006612 2.0e-13 79.3 69 53.6
Ah.10g032300 Amaranthus hybridus HOM05D005465 ORTHO05D006612 2.6e-13 79.0 75 49.3
EL10Ac5g12104 Beta vulgaris HOM05D005465 ORTHO05D006612 2.6e-13 79.0 61 59.0
Sabra04G0090300 Salix brachista HOM05D005465 ORTHO05D006612 2.9e-12 75.5 97 43.3
PGR044G0931 Punica granatum HOM05D005465 ORTHO05D006612 2.4e-11 72.4 76 47.4
Sopen10g012570 Solanum pennellii HOM05D005465 ORTHO05D006612 3.2e-11 72.0 52 57.7
DCAR_025436 Daucus carota HOM05D005465 ORTHO05D006612 4.1e-11 71.6 69 46.4
SEGI_27681 Sequoiadendron giganteum HOM05D005465 ORTHO05D006612 5.4e-11 71.2 90 45.6
Sopen10g006060 Solanum pennellii HOM05D005465 ORTHO05D006612 5.4e-11 71.2 52 57.7
QL10p019840 Quercus lobata HOM05D005465 ORTHO05D006612 1.2e-10 70.1 69 43.5
Oeu062167.1 Olea europaea HOM05D005465 ORTHO05D006612 6.6e-09 64.3 39 71.8
Rhsim10G0048300 Rhododendron simsii HOM05D005465 ORTHO05D006612 8.6e-09 63.9 42 66.7
Mapoly0019s0055 Marchantia polymorpha HOM05D005465 ORTHO05D006612 3.3e-08 62.0 92 34.8
SEGI_31914 Sequoiadendron giganteum HOM05D005465 ORTHO05D006612 3.3e-08 62.0 58 46.6
AagrBONN_evm.TU.Sc2ySwM_362.2833 Anthoceros agrestis HOM05D005465 ORTHO05D006612 3.6e-07 58.5 108 30.6
Sopen10g022010 Solanum pennellii HOM05D005465 ORTHO05D006612 1.1e-06 57.0 39 64.1
Gohir.D09G244200 Gossypium hirsutum HOM05D005465 ORTHO05D006612 3.1e-06 55.5 69 43.5


User provided reference genes

Program Settings