Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR622G1259 Trochodendron aralioides HOM05D005909 ORTHO05D007481 2.5e-220 768.5 384 100.0
Nn4g23953 Nelumbo nucifera HOM05D005909 ORTHO05D007481 2.6e-193 678.7 386 86.3
CSS0033004 Camellia sinensis var. sinensis HOM05D005909 ORTHO05D007481 7.6e-185 650.6 386 83.2
MBI16_g44832_MAGBIO Magnolia biondii HOM05D005909 ORTHO05D007481 2.1e-182 642.5 385 82.9
Hma1.2p1_2306F.1_g319360 Hydrangea macrophylla HOM05D005909 ORTHO05D007481 1.3e-181 639.8 386 80.8
Actinidia14921 Actinidia chinensis HOM05D005909 ORTHO05D007481 3.9e-181 638.3 386 81.9
Hma1.2p1_1314F.1_g274990 Hydrangea macrophylla HOM05D005909 ORTHO05D007481 1.9e-180 636.0 386 80.3
vmacro10599 Vaccinium macrocarpon HOM05D005909 ORTHO05D007481 1.3e-179 633.3 386 80.8
Potri.010G120200 Populus trichocarpa HOM05D005909 ORTHO05D007481 4.8e-179 631.3 385 81.3
Aqoxy3G04056 Aquilegia oxysepala HOM05D005909 ORTHO05D007481 8.1e-179 630.6 385 81.6
Sabra10G0090400 Salix brachista HOM05D005909 ORTHO05D007481 8.1e-179 630.6 386 81.3
Atru.chr11.237 Acer truncatum HOM05D005909 ORTHO05D007481 1.1e-178 630.2 386 81.1
RcHm_v2.0_Chr4g0434411 Rosa chinensis HOM05D005909 ORTHO05D007481 2.0e-177 625.9 379 82.1
QL01p010815 Quercus lobata HOM05D005909 ORTHO05D007481 7.6e-177 624.0 385 79.2
QL93p0145_0024 Quercus lobata HOM05D005909 ORTHO05D007481 7.6e-177 624.0 385 79.2
CiPaw.05G242600 Carya illinoinensis HOM05D005909 ORTHO05D007481 9.9e-177 623.6 382 80.4
Cc11_g09670 Coffea canephora HOM05D005909 ORTHO05D007481 1.3e-176 623.2 384 78.9
CAN.G610.24 Capsicum annuum HOM05D005909 ORTHO05D007481 6.4e-176 620.9 383 77.5
TWI79G1572 Tripterygium wilfordii HOM05D005909 ORTHO05D007481 6.4e-176 620.9 383 80.4
HanXRQChr15g0477421 Helianthus annuus HOM05D005909 ORTHO05D007481 1.1e-175 620.2 386 78.5
PSO782G5715 Papaver somniferum HOM05D005909 ORTHO05D007481 2.4e-175 619.0 384 79.4
Ciclev10015519m.g Citrus clementina HOM05D005909 ORTHO05D007481 3.2e-175 618.6 386 78.5
Solyc05g008870.3 Solanum lycopersicum HOM05D005909 ORTHO05D007481 2.7e-174 615.5 383 77.3
Sopen05g004630 Solanum pennellii HOM05D005909 ORTHO05D007481 2.7e-174 615.5 383 77.3
GSVIVG01011843001 Vitis vinifera HOM05D005909 ORTHO05D007481 2.7e-174 615.5 380 81.3
Rhsim09G0103900 Rhododendron simsii HOM05D005909 ORTHO05D007481 6.0e-174 614.4 402 75.9
Lsat_1_v5_gn_3_62021 Lactuca sativa HOM05D005909 ORTHO05D007481 7.9e-174 614.0 383 78.3
Nitab4.5_0002112g0090 Nicotiana tabacum HOM05D005909 ORTHO05D007481 1.7e-173 612.8 383 76.5
Prupe.1G316800 Prunus persica HOM05D005909 ORTHO05D007481 5.1e-173 611.3 376 79.5
FvH4_4g26720 Fragaria vesca HOM05D005909 ORTHO05D007481 6.6e-173 610.9 376 80.6
ECA246G0525 Erigeron canadensis HOM05D005909 ORTHO05D007481 1.1e-172 610.1 383 78.1
COL.COLO4_32148 Corchorus olitorius HOM05D005909 ORTHO05D007481 2.5e-172 609.0 383 76.8
TPR.G4906 Trifolium pratense HOM05D005909 ORTHO05D007481 4.3e-172 608.2 384 76.6
Lj5g0016761 Lotus japonicus HOM05D005909 ORTHO05D007481 5.6e-172 607.8 384 76.8
Duzib248G1493 Durio zibethinus HOM05D005909 ORTHO05D007481 9.6e-172 607.1 391 76.7
Nitab4.5_0000694g0120 Nicotiana tabacum HOM05D005909 ORTHO05D007481 9.6e-172 607.1 383 76.8
Ca_06889_v3 Cicer arietinum L. HOM05D005909 ORTHO05D007481 1.6e-171 606.3 384 76.8
Glyma.20G120600 Glycine max HOM05D005909 ORTHO05D007481 3.1e-170 602.1 384 74.5
Gohir.D02G171900 Gossypium hirsutum HOM05D005909 ORTHO05D007481 3.1e-170 602.1 386 76.4
Psat6g224680 Pisum sativum HOM05D005909 ORTHO05D007481 2.0e-169 599.4 384 76.0
Gorai.005G193400 Gossypium raimondii HOM05D005909 ORTHO05D007481 3.4e-169 598.6 392 75.3
Cfa015837 Carpinus fangiana HOM05D005909 ORTHO05D007481 4.5e-169 598.2 386 77.5
Gohir.A03G148900 Gossypium hirsutum HOM05D005909 ORTHO05D007481 9.9e-169 597.0 393 75.6
VMungo0720G1068 Vigna mungo HOM05D005909 ORTHO05D007481 1.3e-168 596.7 384 75.3
Lalb_Chr21g0308731 Lupinus albus HOM05D005909 ORTHO05D007481 1.7e-168 596.3 380 76.6
Medtr1g109590 Medicago truncatula HOM05D005909 ORTHO05D007481 2.2e-168 595.9 382 75.4
DCAR_007264 Daucus carota HOM05D005909 ORTHO05D007481 2.9e-168 595.5 384 76.8
MD16G1037200 Malus domestica HOM05D005909 ORTHO05D007481 2.9e-168 595.5 378 77.8
Eucgr.G02238 Eucalyptus grandis HOM05D005909 ORTHO05D007481 9.3e-167 590.5 380 76.1
arahy.Tifrunner.gnm1.ann1.W577BF Arachis hypogaea HOM05D005909 ORTHO05D007481 1.6e-166 589.7 379 74.9
Lj6A753G52 Lonicera japonica HOM05D005909 ORTHO05D007481 1.6e-166 589.7 385 76.4
MELO3C005340.2 Cucumis melo HOM05D005909 ORTHO05D007481 2.1e-166 589.3 386 73.6
CsaV3_5G028790 Cucumis sativus L. HOM05D005909 ORTHO05D007481 3.5e-166 588.6 386 73.3
SalBow8G3248 Salvia bowleyana HOM05D005909 ORTHO05D007481 3.5e-166 588.6 381 74.5
arahy.Tifrunner.gnm1.ann1.IU6D7D Arachis hypogaea HOM05D005909 ORTHO05D007481 4.6e-166 588.2 382 74.3
CDE08G1136 Ceratophyllum demersum HOM05D005909 ORTHO05D007481 1.0e-165 587.0 383 74.7
Phvul.007G032000 Phaseolus vulgaris HOM05D005909 ORTHO05D007481 3.9e-165 585.1 384 74.2
Sed0017467 Sechium edule HOM05D005909 ORTHO05D007481 1.1e-164 583.6 386 73.1
MSTRG.13555 Avicennia marina HOM05D005909 ORTHO05D007481 1.5e-164 583.2 381 74.5
Dinv16136 Davidia involucrata HOM05D005909 ORTHO05D007481 1.9e-164 582.8 383 77.3
SalBow8G0352 Salvia bowleyana HOM05D005909 ORTHO05D007481 2.8e-163 578.9 388 72.9
BcaC06g34207 Brassica carinata HOM05D005909 ORTHO05D007481 1.1e-162 577.0 379 73.1
PGR119G2457 Punica granatum HOM05D005909 ORTHO05D007481 1.1e-162 577.0 385 73.8
Sc14g0007280 Simmondsia chinensis HOM05D005909 ORTHO05D007481 3.1e-162 575.5 387 73.4
CARHR143760 Cardamine hirsuta HOM05D005909 ORTHO05D007481 6.9e-162 574.3 384 73.2
Haze_00654 Corylus avellana HOM05D005909 ORTHO05D007481 6.9e-162 574.3 518 60.6
HPP92_024514 Vanilla planifolia HOM05D005909 ORTHO05D007481 4.5e-161 571.6 378 74.9
PSO063G1187 Papaver somniferum HOM05D005909 ORTHO05D007481 7.6e-161 570.9 347 81.6
C07p31670 Brassica napus HOM05D005909 ORTHO05D007481 2.2e-160 569.3 380 72.6
BolC7t43706H Brassica oleracea HOM05D005909 ORTHO05D007481 2.2e-160 569.3 380 72.6
ATR0807G244 Amborella trichopoda HOM05D005909 ORTHO05D007481 6.5e-160 567.8 385 71.4
THA.LOC104823950 Tarenaya hassleriana HOM05D005909 ORTHO05D007481 8.4e-160 567.4 385 72.2
AL5G10170 Arabidopsis lyrata HOM05D005909 ORTHO05D007481 5.5e-159 564.7 384 72.1
Sp2g12680 Schrenkiella parvula HOM05D005909 ORTHO05D007481 1.2e-158 563.5 383 70.8
Aa31LG2G8670 Aethionema arabicum HOM05D005909 ORTHO05D007481 4.6e-158 561.6 383 71.0
A06p44550 Brassica napus HOM05D005909 ORTHO05D007481 7.9e-158 560.8 385 70.4
AT2G01220 Arabidopsis thaliana HOM05D005909 ORTHO05D007481 1.0e-157 560.5 384 72.4
Hund20744 Selenicereus undatus HOM05D005909 ORTHO05D007481 5.1e-157 558.1 379 71.0
BraA06t27329Z Brassica rapa HOM05D005909 ORTHO05D007481 1.5e-156 556.6 390 69.7
Zm00001eb360650 Zea mays HOM05D005909 ORTHO05D007481 1.6e-155 553.1 383 70.8
AUR62037268 Chenopodium quinoa HOM05D005909 ORTHO05D007481 1.8e-154 549.7 383 68.4
AUR62002812 Chenopodium quinoa HOM05D005909 ORTHO05D007481 2.4e-154 549.3 383 68.7
Thhalv10000909m.g Eutrema salsugineum HOM05D005909 ORTHO05D007481 2.9e-152 542.3 384 69.8
Cpa.g.sc65.66 Carica papaya HOM05D005909 ORTHO05D007481 6.5e-152 541.2 384 70.3
EL10Ac6g14305 Beta vulgaris HOM05D005909 ORTHO05D007481 8.4e-152 540.8 376 67.8
unitig_699.g19483 Utricularia gibba HOM05D005909 ORTHO05D007481 5.5e-151 538.1 381 69.6
Migut.E00369 Erythranthe guttata HOM05D005909 ORTHO05D007481 9.3e-151 537.3 424 65.6
Peaxi162Scf00179g00534 Petunia axillaris HOM05D005909 ORTHO05D007481 3.9e-149 531.9 383 69.7
AL5G17030 Arabidopsis lyrata HOM05D005909 ORTHO05D007481 1.1e-148 530.4 385 66.5
Ah.03g138370 Amaranthus hybridus HOM05D005909 ORTHO05D007481 9.7e-148 527.3 356 71.3
ClCG01G005900 Citrullus lanatus HOM05D005909 ORTHO05D007481 1.3e-147 526.9 386 68.4
CARHR148990 Cardamine hirsuta HOM05D005909 ORTHO05D007481 2.8e-147 525.8 384 65.1
Carub.0005s0605 Capsella rubella HOM05D005909 ORTHO05D007481 4.5e-145 518.5 382 67.0
AT3G27610 Arabidopsis thaliana HOM05D005909 ORTHO05D007481 2.2e-144 516.2 385 65.5
Manes.06G064900 Manihot esculenta HOM05D005909 ORTHO05D007481 1.4e-143 513.5 310 81.9
FAN07G1481 Fragaria x ananassa HOM05D005909 ORTHO05D007481 9.4e-143 510.8 351 73.5
Thecc.02G222000 Theobroma cacao HOM05D005909 ORTHO05D007481 1.2e-137 493.8 308 78.6
Dinv31596 Davidia involucrata HOM05D005909 ORTHO05D007481 1.5e-132 476.9 332 73.8
FAN12G0127 Fragaria x ananassa HOM05D005909 ORTHO05D007481 1.7e-131 473.4 290 79.7
TAR622G0977 Trochodendron aralioides HOM05D005909 ORTHO05D007481 7.0e-130 468.0 232 99.1
FAN22G0620 Fragaria x ananassa HOM05D005909 ORTHO05D007481 2.9e-128 462.6 290 77.9
FAN12G0185 Fragaria x ananassa HOM05D005909 ORTHO05D007481 3.2e-127 459.1 306 74.5
Actinidia16683 Actinidia chinensis HOM05D005909 ORTHO05D007481 5.5e-127 458.4 310 75.2
Oeu027686.1 Olea europaea HOM05D005909 ORTHO05D007481 1.4e-125 453.8 383 62.4
AagrBONN_evm.TU.Sc2ySwM_362.1435 Anthoceros agrestis HOM05D004406 ORTHO05D005660 7.2e-119 431.4 374 55.3
Mapoly0100s0051 Marchantia polymorpha HOM05D005909 ORTHO05D007481 1.8e-117 426.8 381 55.4
CANSAT01G0643 Cannabis sativa HOM05D005909 ORTHO05D007481 3.8e-112 409.1 262 75.2
Pp3c3_16750 Physcomitrium patens HOM05D005909 ORTHO05D007481 2.7e-110 402.9 381 51.4
FAN17G2694 Fragaria x ananassa HOM05D005909 ORTHO05D007481 6.8e-109 398.3 376 59.3
Pp3c12_7340 Physcomitrium patens HOM05D005909 ORTHO05D007481 2.6e-108 396.4 378 51.9
SMO196G0003 Selaginella moellendorffii HOM05D005909 ORTHO05D007481 1.8e-106 390.2 404 48.8
Carub.0005s0021 Capsella rubella HOM05D005909 ORTHO05D007481 7.0e-106 388.3 266 72.2
Os01g0691500 Oryza sativa ssp. japonica HOM05D005909 ORTHO05D007481 2.0e-100 370.2 274 67.9
SGA_v2.0_scaffold14G06904 Striga asiatica HOM05D005909 ORTHO05D007481 1.5e-92 344.0 229 73.8
Carub.0005s0593 Capsella rubella HOM05D005909 ORTHO05D007481 8.1e-70 268.5 229 59.8
SGA_v2.0_scaffold14G06901 Striga asiatica HOM05D005909 ORTHO05D007481 1.6e-65 254.2 148 80.4
PGSC0003DMG401030529 Solanum tuberosum HOM05D005909 ORTHO05D007481 4.0e-61 239.6 153 78.4
MCO06G004 Micromonas commoda HOM05D005909 ORTHO05D007481 4.9e-59 232.6 392 36.0
Cre06.g278116 Chlamydomonas reinhardtii HOM05D005909 ORTHO05D007481 5.1e-56 222.6 426 34.7
PRCOL_00006609 Prasinoderma coloniale HOM05D005909 ORTHO05D007481 7.4e-55 218.8 424 33.7
SEGI_08541 Sequoiadendron giganteum HOM05D005909 ORTHO05D007481 4.5e-52 209.5 152 65.1
Oeu027687.1 Olea europaea HOM05D005909 ORTHO05D007481 8.2e-46 188.7 115 79.1
SEGI_29486 Sequoiadendron giganteum HOM05D005909 ORTHO05D007481 2.1e-38 164.1 107 69.2
CBR_g39317 Chara braunii HOM05D005909 ORTHO05D007481 1.3e-30 138.3 182 42.9
CiPaw.05G241800 Carya illinoinensis HOM05D005909 ORTHO05D007481 4.6e-25 119.8 66 86.4
arahy.Tifrunner.gnm1.ann1.XNS652 Arachis hypogaea HOM05D005909 ORTHO05D007481 8.8e-24 115.5 145 48.3
SMO265G0018 Selaginella moellendorffii HOM05D005909 ORTHO05D007481 1.2e-20 105.1 134 42.5
SMO163G0092 Selaginella moellendorffii HOM05D005909 ORTHO05D007481 1.7e-19 101.3 145 40.7
TPR.G28941 Trifolium pratense HOM05D000324 ORTHO05D004875 1.6e-17 94.7 71 66.2
BcaC06g31323 Brassica carinata HOM05D005909 ORTHO05D007481 2.7e-17 94.0 68 66.2
SMO146G0235 Selaginella moellendorffii HOM05D020292 ORTHO05D030583 1.8e-13 81.3 108 41.7
CBR_g39316 Chara braunii HOM05D000019 ORTHO05D000002 7.7e-12 75.9 70 52.9
SEGI_32432 Sequoiadendron giganteum HOM05D005909 ORTHO05D007481 1.0e-11 75.5 69 52.2
Gohir.D12G121400 Gossypium hirsutum HOM05D005909 ORTHO05D046826 3.2e-10 70.5 36 91.7
Gorai.008G132300 Gossypium raimondii HOM05D005909 ORTHO05D046826 4.0e-08 63.5 36 83.3
SMO199G0001 Selaginella moellendorffii HOM05D006925 ORTHO05D008830 3.3e-07 60.5 85 38.8
Nn3g17949 Nelumbo nucifera HOM05D005909 ORTHO05D277065 2.2e-06 57.8 75 45.3


User provided reference genes

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