Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR622G1217 Trochodendron aralioides HOM05D006499 ORTHO05D007874 1.9e-110 402.5 199 100.0
Nn4g24968 Nelumbo nucifera HOM05D006499 ORTHO05D007874 1.3e-90 336.7 191 82.7
Aqoxy3G00285 Aquilegia oxysepala HOM05D006499 ORTHO05D007874 5.8e-88 327.8 195 78.5
Sopen01g003460 Solanum pennellii HOM05D006499 ORTHO05D007874 6.7e-84 314.3 192 79.2
PGSC0003DMG400016411 Solanum tuberosum HOM05D006499 ORTHO05D007874 1.9e-83 312.8 194 77.8
Solyc01g007920.2 Solanum lycopersicum HOM05D006499 ORTHO05D007874 3.3e-83 312.0 192 78.1
Nitab4.5_0000069g0350 Nicotiana tabacum HOM05D006499 ORTHO05D007874 4.8e-82 308.1 193 76.7
Cc02_g20760 Coffea canephora HOM05D006499 ORTHO05D007874 6.2e-82 307.8 194 76.3
Nitab4.5_0004301g0030 Nicotiana tabacum HOM05D006499 ORTHO05D007874 6.2e-82 307.8 193 75.6
Peaxi162Scf00021g01915 Petunia axillaris HOM05D006499 ORTHO05D007874 1.4e-81 306.6 196 75.0
RcHm_v2.0_Chr4g0446811 Rosa chinensis HOM05D006499 ORTHO05D007874 1.4e-81 306.6 194 75.3
Potri.003G003300 Populus trichocarpa HOM05D006499 ORTHO05D007874 4.0e-81 305.1 199 74.4
vmacro04318 Vaccinium macrocarpon HOM05D006499 ORTHO05D007874 1.5e-80 303.1 196 73.5
Rhsim05G0006600 Rhododendron simsii HOM05D006499 ORTHO05D007874 2.0e-80 302.8 196 73.0
Cfa008745 Carpinus fangiana HOM05D006499 ORTHO05D007874 2.9e-79 298.9 189 75.1
Haze_11761 Corylus avellana HOM05D006499 ORTHO05D007874 4.9e-79 298.1 189 74.1
Cpa.g.sc92.93 Carica papaya HOM05D006499 ORTHO05D007874 8.4e-79 297.4 192 73.4
Oeu012342.1 Olea europaea HOM05D006499 ORTHO05D007874 2.5e-78 295.8 190 73.2
Thecc.02G158700 Theobroma cacao HOM05D006499 ORTHO05D007874 3.2e-78 295.4 190 74.2
MSTRG.12232 Avicennia marina HOM05D006499 ORTHO05D007874 7.1e-78 294.3 191 70.2
Lsat_1_v5_gn_8_80081 Lactuca sativa HOM05D006499 ORTHO05D007874 7.1e-78 294.3 191 71.7
MBI06_g20294_MAGBIO Magnolia biondii HOM05D006499 ORTHO05D007874 1.2e-77 293.5 198 69.2
CiPaw.06G061000 Carya illinoinensis HOM05D006499 ORTHO05D007874 1.6e-77 293.1 191 71.7
FAN07G1092 Fragaria x ananassa HOM05D006499 ORTHO05D007874 6.0e-77 291.2 183 77.0
Lalb_Chr04g0258971 Lupinus albus HOM05D006499 ORTHO05D007874 7.9e-77 290.8 196 70.9
Prupe.1G348500 Prunus persica HOM05D006499 ORTHO05D007874 7.9e-77 290.8 191 71.2
Gohir.D02G188400 Gossypium hirsutum HOM05D006499 ORTHO05D007874 1.3e-76 290.0 192 72.4
Gorai.005G211100 Gossypium raimondii HOM05D006499 ORTHO05D007874 1.3e-76 290.0 192 72.4
Manes.15G079500 Manihot esculenta HOM05D006499 ORTHO05D007874 1.3e-76 290.0 192 73.4
Duzib132G0016 Durio zibethinus HOM05D006499 ORTHO05D007874 5.1e-76 288.1 191 74.3
Gohir.A03G165200 Gossypium hirsutum HOM05D006499 ORTHO05D007874 8.7e-76 287.3 192 71.9
HPP92_005057 Vanilla planifolia HOM05D006499 ORTHO05D007874 8.7e-76 287.3 191 67.0
ATR0618G206 Amborella trichopoda HOM05D006499 ORTHO05D007874 1.9e-75 286.2 197 69.5
MD16G1003500 Malus domestica HOM05D006499 ORTHO05D007874 5.7e-75 284.6 185 72.4
Actinidia13714 Actinidia chinensis HOM05D006499 ORTHO05D007874 7.4e-75 284.3 184 74.5
Psat6g099520 Pisum sativum HOM05D006499 ORTHO05D007874 9.6e-75 283.9 189 72.0
Ciclev10032745m.g Citrus clementina HOM05D006499 ORTHO05D007874 1.3e-74 283.5 191 72.3
Migut.H01291 Erythranthe guttata HOM05D006499 ORTHO05D007874 1.6e-74 283.1 191 68.6
DCAR_026894 Daucus carota HOM05D006499 ORTHO05D007874 2.8e-74 282.3 195 71.8
Lj6P712T24 Lonicera japonica HOM05D006499 ORTHO05D007874 2.8e-74 282.3 168 78.6
ECA236G1709 Erigeron canadensis HOM05D006499 ORTHO05D007874 4.8e-74 281.6 192 70.8
Lj6P717T75 Lonicera japonica HOM05D006499 ORTHO05D007874 1.1e-73 280.4 168 78.0
QL03p017736 Quercus lobata HOM05D006499 ORTHO05D007874 3.1e-73 278.9 188 72.3
QL03p017519 Quercus lobata HOM05D006499 ORTHO05D007874 5.3e-73 278.1 188 72.3
Aa31LG11G2680 Aethionema arabicum HOM05D006499 ORTHO05D007874 6.9e-73 277.7 192 69.3
FAN12G4256 Fragaria x ananassa HOM05D006499 ORTHO05D007874 6.9e-73 277.7 176 76.7
Glyma.09G283200 Glycine max HOM05D006499 ORTHO05D007874 1.2e-72 276.9 191 69.6
Ca_05122_v3 Cicer arietinum L. HOM05D006499 ORTHO05D007874 2.0e-72 276.2 190 70.0
Medtr1g038530 Medicago truncatula HOM05D006499 ORTHO05D007874 2.0e-72 276.2 193 67.4
CANSAT01G2706 Cannabis sativa HOM05D006499 ORTHO05D007874 2.6e-72 275.8 193 68.9
Duzib132G0405 Durio zibethinus HOM05D006499 ORTHO05D007874 2.6e-72 275.8 190 71.6
COL.COLO4_33044 Corchorus olitorius HOM05D006499 ORTHO05D007874 3.4e-72 275.4 197 69.0
CSS0024171 Camellia sinensis var. sinensis HOM05D006499 ORTHO05D007874 4.5e-72 275.0 192 71.9
THA.LOC104800852 Tarenaya hassleriana HOM05D006499 ORTHO05D007874 1.7e-71 273.1 187 71.7
AUR62032973 Chenopodium quinoa HOM05D006499 ORTHO05D007874 8.5e-71 270.8 202 64.9
Medtr1g037830 Medicago truncatula HOM05D006499 ORTHO05D007874 1.9e-70 269.6 193 66.8
MELO3C011747.2 Cucumis melo HOM05D000045 ORTHO05D007874 3.2e-70 268.9 187 68.4
CsaV3_5G006120 Cucumis sativus L. HOM05D000045 ORTHO05D007874 3.2e-70 268.9 192 66.1
SGA_v2.0_scaffold49G18416 Striga asiatica HOM05D006499 ORTHO05D007874 3.2e-70 268.9 192 66.1
AT5G23230 Arabidopsis thaliana HOM05D006499 ORTHO05D007874 4.2e-70 268.5 193 66.3
arahy.Tifrunner.gnm1.ann1.U0P7JC Arachis hypogaea HOM05D000717 ORTHO05D000555 2.1e-69 266.2 194 65.5
Lalb_Chr10g0094911 Lupinus albus HOM05D006499 ORTHO05D007874 2.1e-69 266.2 186 70.4
EL10Ac9g22960 Beta vulgaris HOM05D006499 ORTHO05D007874 2.7e-69 265.8 204 65.2
TAR622G0494 Trochodendron aralioides HOM05D006499 ORTHO05D007874 3.6e-69 265.4 162 80.2
Lj2g0027544 Lotus japonicus HOM05D006499 ORTHO05D007874 6.1e-69 264.6 196 66.3
Sed0001124 Sechium edule HOM05D006499 ORTHO05D007874 1.3e-68 263.5 188 66.0
AL6G34450 Arabidopsis lyrata HOM05D006499 ORTHO05D007874 3.0e-68 262.3 192 65.6
Carub.0006s2100 Capsella rubella HOM05D006499 ORTHO05D007874 3.9e-68 261.9 195 65.6
unitig_578.g16567 Utricularia gibba HOM05D006499 ORTHO05D007874 3.9e-68 261.9 189 64.6
AT5G23220 Arabidopsis thaliana HOM05D006499 ORTHO05D007874 5.1e-68 261.5 192 66.1
CARHR190310 Cardamine hirsuta HOM05D006499 ORTHO05D007874 5.1e-68 261.5 194 64.9
ClCG02G014040 Citrullus lanatus HOM05D006499 ORTHO05D007874 8.7e-68 260.8 187 65.2
Thhalv10005281m.g Eutrema salsugineum HOM05D006499 ORTHO05D007874 2.5e-67 259.2 193 65.8
Phvul.003G004400 Phaseolus vulgaris HOM05D006499 ORTHO05D007874 4.3e-67 258.5 199 63.8
BcaB07g29862 Brassica carinata HOM05D006499 ORTHO05D007874 5.7e-67 258.1 198 65.2
Sp2g23920 Schrenkiella parvula HOM05D006499 ORTHO05D007874 7.4e-67 257.7 193 66.3
arahy.Tifrunner.gnm1.ann1.BULB93 Arachis hypogaea HOM05D006499 ORTHO05D007874 1.3e-66 256.9 179 68.7
BraA02t09053Z Brassica rapa HOM05D006499 ORTHO05D007874 1.1e-65 253.8 193 65.3
SMO116G0488 Selaginella moellendorffii HOM05D006499 ORTHO05D007874 4.1e-65 251.9 187 62.6
BcaC03g18032 Brassica carinata HOM05D006499 ORTHO05D007874 5.3e-65 251.5 193 64.8
C02p60950 Brassica napus HOM05D006499 ORTHO05D007874 5.3e-65 251.5 193 64.8
BolC2t12145H Brassica oleracea HOM05D006499 ORTHO05D007874 5.3e-65 251.5 193 64.8
A02p41090 Brassica napus HOM05D006499 ORTHO05D007874 9.1e-65 250.8 193 64.2
TPR.G29797 Trifolium pratense HOM05D006499 ORTHO05D007874 1.2e-64 250.4 201 64.2
Zm00001eb076800 Zea mays HOM05D006499 ORTHO05D007874 5.5e-62 241.5 192 61.5
COL.COLO4_06169 Corchorus olitorius HOM05D006499 ORTHO05D007874 1.2e-61 240.4 166 70.5
Pp3c12_9010 Physcomitrium patens HOM05D006499 ORTHO05D007874 7.9e-61 237.7 187 60.4
AUR62017708 Chenopodium quinoa HOM05D006499 ORTHO05D007874 1.0e-60 237.3 177 65.5
Os04g0525800 Oryza sativa ssp. japonica HOM05D006499 ORTHO05D007874 1.5e-59 233.4 186 58.6
AagrBONN_evm.TU.Sc2ySwM_344.3677 Anthoceros agrestis HOM05D006499 ORTHO05D007874 1.8e-57 226.5 190 56.8
Sc06g0006830 Simmondsia chinensis HOM05D006499 ORTHO05D007874 2.4e-57 226.1 149 70.5
Mapoly0180s0008 Marchantia polymorpha HOM05D006499 ORTHO05D007874 1.0e-52 210.7 187 55.1
GSVIVG01026240001 Vitis vinifera HOM05D006499 ORTHO05D007874 5.7e-51 204.9 194 55.7
CBR_g16977 Chara braunii HOM05D006499 ORTHO05D007874 1.7e-47 193.4 196 50.0
SHI02178 Sapria himalayana HOM05D006499 ORTHO05D007874 7.2e-46 188.0 189 52.4
CAN.G655.2 Capsicum annuum HOM05D006499 ORTHO05D007874 1.8e-41 173.3 143 57.3
SEGI_40434 Sequoiadendron giganteum HOM05D006499 ORTHO05D007874 1.3e-34 150.6 106 65.1
QL04p029592 Quercus lobata HOM05D006499 ORTHO05D007874 1.5e-30 137.1 89 74.2
CAN.G2.1 Capsicum annuum HOM05D006499 ORTHO05D007874 5.5e-30 135.2 83 79.5
QL05p044270 Quercus lobata HOM05D000125 ORTHO05D007874 2.2e-26 123.2 108 61.1
Nn5g28518 Nelumbo nucifera HOM05D006499 ORTHO05D007874 1.1e-25 120.9 85 69.4
arahy.Tifrunner.gnm1.ann1.YHJY2A Arachis hypogaea HOM05D006499 ORTHO05D007874 1.6e-24 117.1 81 69.1
PGR044G1944 Punica granatum HOM05D006499 ORTHO05D007874 1.0e-20 104.4 145 44.8
A03p62810 Brassica napus HOM05D006499 ORTHO05D007874 5.7e-19 98.6 77 62.3
BraA03t15356Z Brassica rapa HOM05D006499 ORTHO05D007874 5.7e-19 98.6 77 62.3
Medtr1g037850 Medicago truncatula HOM05D006499 ORTHO05D007874 3.7e-18 95.9 91 53.8
BcaC03g13135 Brassica carinata HOM05D006499 ORTHO05D007874 1.2e-16 90.9 73 63.0
Nn6g33750 Nelumbo nucifera HOM05D006499 ORTHO05D007874 3.6e-13 79.3 49 71.4
Cre10.g448500 Chlamydomonas reinhardtii HOM05D006499 ORTHO05D007874 4.0e-12 75.9 187 27.3
Cre17.g706800 Chlamydomonas reinhardtii HOM05D006499 ORTHO05D007874 4.0e-12 75.9 179 29.6
Cfa021425 Carpinus fangiana HOM05D006499 ORTHO05D007874 5.2e-12 75.5 200 27.5
ATR0736G109 Amborella trichopoda HOM05D005658 ORTHO05D006989 6.8e-12 75.1 172 33.7
Cre16.g674650 Chlamydomonas reinhardtii HOM05D005658 ORTHO05D006989 8.9e-12 74.7 172 30.2
Cfa026003 Carpinus fangiana HOM05D006499 ORTHO05D007874 2.6e-11 73.2 183 29.0
SGA_v2.0_scaffold4G02011 Striga asiatica HOM05D005658 ORTHO05D006989 2.6e-11 73.2 177 31.1
Potri.003G051700 Populus trichocarpa HOM05D005658 ORTHO05D006989 5.8e-11 72.0 173 30.1
Ca_29435_v3 Cicer arietinum L. HOM05D006499 ORTHO05D007874 9.8e-11 71.2 156 31.4
Pp3s30_680 Physcomitrium patens HOM05D006499 ORTHO05D007874 1.7e-10 70.5 176 29.0
MCO13G030 Micromonas commoda HOM05D006499 ORTHO05D007874 2.2e-10 70.1 178 28.1
Sp3g14560 Schrenkiella parvula HOM05D005658 ORTHO05D006989 3.7e-10 69.3 174 33.3
AL3G28880 Arabidopsis lyrata HOM05D005658 ORTHO05D006989 4.9e-10 68.9 171 33.3
CDE08G1506 Ceratophyllum demersum HOM05D005658 ORTHO05D006989 4.9e-10 68.9 173 30.1
PSO063G2380 Papaver somniferum HOM05D005658 ORTHO05D006989 4.9e-10 68.9 164 28.7
GSVIVG01017054001 Vitis vinifera HOM05D005658 ORTHO05D006989 6.4e-10 68.6 175 29.1
AagrBONN_evm.TU.Sc2ySwM_369.407 Anthoceros agrestis HOM05D002948 ORTHO05D003577 1.1e-09 67.8 195 30.8
PSO210G2136 Papaver somniferum HOM05D005658 ORTHO05D006989 1.1e-09 67.8 172 29.1
HPP92_003927 Vanilla planifolia HOM05D005658 ORTHO05D006989 1.1e-09 67.8 172 29.7
PSO210G3060 Papaver somniferum HOM05D005658 ORTHO05D006989 1.4e-09 67.4 170 28.8
Sabra03G0027300 Salix brachista HOM05D005658 ORTHO05D006989 2.4e-09 66.6 166 30.7
MCO09G426 Micromonas commoda HOM05D006499 ORTHO05D007874 3.2e-09 66.2 149 28.9
Manes.04G130900 Manihot esculenta HOM05D005658 ORTHO05D006989 2.0e-08 63.5 172 29.1
Pp3s30_567 Physcomitrium patens HOM05D006499 ORTHO05D007874 2.0e-08 63.5 145 26.9
Cre06.g305500 Chlamydomonas reinhardtii HOM05D006499 ORTHO05D007874 3.9e-07 59.3 149 25.5
MCO09G247 Micromonas commoda HOM05D006499 ORTHO05D007874 3.9e-07 59.3 81 35.8
MBI04_g04855_MAGBIO Magnolia biondii HOM05D005658 ORTHO05D006989 8.6e-07 58.2 144 29.2
Os02g0276200 Oryza sativa ssp. japonica HOM05D005658 ORTHO05D006989 4.3e-06 55.8 136 29.4
Os02g0276400 Oryza sativa ssp. japonica HOM05D005658 ORTHO05D006989 7.3e-06 55.1 171 26.9


User provided reference genes

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