Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR622G1187 Trochodendron aralioides HOM05D004959 ORTHO05D005961 0.0e+00 2026.5 1010 100.0
GSVIVG01032944001 Vitis vinifera HOM05D004959 ORTHO05D005961 6.8e-302 1040.8 991 55.8
Nn3g21093 Nelumbo nucifera HOM05D004959 ORTHO05D005961 2.8e-295 1018.8 1004 55.7
Dinv04263 Davidia involucrata HOM05D004959 ORTHO05D005961 1.5e-280 969.9 998 53.9
Dinv06304 Davidia involucrata HOM05D004959 ORTHO05D005961 7.4e-280 967.6 999 53.9
Aqoxy3G03508 Aquilegia oxysepala HOM05D004959 ORTHO05D005961 1.2e-266 923.7 998 50.8
Cfa000659 Carpinus fangiana HOM05D004959 ORTHO05D005961 3.4e-261 905.6 996 50.3
Aqoxy5G03195 Aquilegia oxysepala HOM05D004959 ORTHO05D005961 5.9e-261 904.8 998 49.9
QL04p014830 Quercus lobata HOM05D004959 ORTHO05D005961 1.8e-257 893.3 1004 50.4
QL04p014466 Quercus lobata HOM05D004959 ORTHO05D005961 8.8e-257 891.0 1004 50.2
Thecc.02G004800 Theobroma cacao HOM05D004959 ORTHO05D005961 4.5e-253 878.6 998 48.2
MBI07_g42017_MAGBIO Magnolia biondii HOM05D004959 ORTHO05D005961 1.4e-251 873.6 1087 48.7
Hma1.2p1_0137F.1_g062550 Hydrangea macrophylla HOM05D004959 ORTHO05D005961 2.8e-247 859.4 1005 48.5
PSO017G0156 Papaver somniferum HOM05D004959 ORTHO05D005961 4.1e-246 855.5 1012 48.3
PSO478G1937 Papaver somniferum HOM05D004959 ORTHO05D005961 1.4e-241 840.5 1004 47.3
Haze_06165 Corylus avellana HOM05D004959 ORTHO05D005961 3.9e-241 839.0 1032 47.4
Prupe.3G104300 Prunus persica HOM05D004959 ORTHO05D005961 6.3e-239 831.6 993 47.5
Duzib248G0683 Durio zibethinus HOM05D004959 ORTHO05D005961 2.4e-238 829.7 1014 46.5
Actinidia07601 Actinidia chinensis HOM05D004959 ORTHO05D005961 2.3e-233 813.1 992 48.0
TWI63G1138 Tripterygium wilfordii HOM05D004959 ORTHO05D005961 2.8e-231 806.2 1000 47.7
Atru.chr8.666 Acer truncatum HOM05D004959 ORTHO05D005961 4.8e-231 805.4 944 48.3
Potri.018G118800 Populus trichocarpa HOM05D004959 ORTHO05D005961 5.3e-230 802.0 1002 45.1
Manes.16G050600 Manihot esculenta HOM05D004959 ORTHO05D005961 2.9e-228 796.2 1002 44.5
Sabra18G0102400 Salix brachista HOM05D004959 ORTHO05D005961 4.7e-226 788.9 1000 44.7
MD13G1224700 Malus domestica HOM05D004959 ORTHO05D005961 1.0e-225 787.7 993 46.8
Rhsim01G0101500 Rhododendron simsii HOM05D004959 ORTHO05D005961 8.3e-223 778.1 1019 45.4
Cpa.g.sc30.122 Carica papaya HOM05D004959 ORTHO05D005961 5.4e-222 775.4 990 44.4
Rhsim02G0134800 Rhododendron simsii HOM05D004959 ORTHO05D005961 5.4e-222 775.4 1000 45.6
vmacro15931 Vaccinium macrocarpon HOM05D004959 ORTHO05D005961 6.6e-220 768.5 1033 44.0
Gohir.D12G047700 Gossypium hirsutum HOM05D004959 ORTHO05D005961 2.8e-218 763.1 996 44.1
Gorai.008G050400 Gossypium raimondii HOM05D004959 ORTHO05D005961 2.3e-217 760.0 996 44.1
Gohir.A12G049000 Gossypium hirsutum HOM05D004959 ORTHO05D005961 6.8e-217 758.4 995 43.6
FvH4_4g05080 Fragaria vesca HOM05D004959 ORTHO05D005961 1.3e-215 754.2 992 45.6
RcHm_v2.0_Chr4g0396011 Rosa chinensis HOM05D004959 ORTHO05D005961 5.4e-214 748.8 992 46.2
Ciclev10014195m.g Citrus clementina HOM05D004959 ORTHO05D005961 1.3e-212 744.2 914 46.6
Lj3A850G96 Lonicera japonica HOM05D004959 ORTHO05D005961 1.7e-212 743.8 1012 45.0
FAN12G3376 Fragaria x ananassa HOM05D004959 ORTHO05D005961 1.6e-210 737.3 1001 45.0
COL.COLO4_18025 Corchorus olitorius HOM05D004959 ORTHO05D005961 3.6e-210 736.1 998 43.0
CSS0032692 Camellia sinensis var. sinensis HOM05D004959 ORTHO05D005961 4.3e-203 712.6 896 45.8
FAN22G0965 Fragaria x ananassa HOM05D004959 ORTHO05D005961 1.6e-197 694.1 999 42.7
Sed0018634 Sechium edule HOM05D004959 ORTHO05D005961 1.3e-196 691.0 1004 41.2
ClCG09G011850 Citrullus lanatus HOM05D004959 ORTHO05D005961 8.6e-196 688.3 1004 41.5
ATR0037G053 Amborella trichopoda HOM05D004959 ORTHO05D005961 4.9e-191 672.5 1059 40.7
FAN17G1136 Fragaria x ananassa HOM05D004959 ORTHO05D005961 3.2e-190 669.8 990 42.5
CiPaw.10G061900 Carya illinoinensis HOM05D004959 ORTHO05D005961 4.6e-189 666.0 815 48.2
CsaV3_5G015760 Cucumis sativus L. HOM05D004959 ORTHO05D005961 6.6e-188 662.1 1022 40.2
MELO3C026444.2 Cucumis melo HOM05D004959 ORTHO05D005961 9.6e-187 658.3 1006 40.4
Nitab4.5_0010326g0010 Nicotiana tabacum HOM05D004959 ORTHO05D005961 1.1e-185 654.8 1004 39.5
Aqoxy7G01840 Aquilegia oxysepala HOM05D004959 ORTHO05D005961 1.8e-185 654.1 807 47.3
PGR142G3977 Punica granatum HOM05D004959 ORTHO05D005961 4.0e-185 652.9 957 42.2
Nitab4.5_0000036g0080 Nicotiana tabacum HOM05D004959 ORTHO05D005961 4.9e-183 646.0 1003 39.5
Sc10g0002790 Simmondsia chinensis HOM05D004959 ORTHO05D005961 6.4e-183 645.6 999 40.5
CANSAT25G2352 Cannabis sativa HOM05D004959 ORTHO05D005961 1.1e-182 644.8 995 41.4
Oeu021359.1 Olea europaea HOM05D004959 ORTHO05D005961 1.4e-182 644.4 1004 40.3
PGSC0003DMG400003329 Solanum tuberosum HOM05D004959 ORTHO05D005961 4.3e-179 632.9 1000 39.1
Cc04_g10880 Coffea canephora HOM05D004959 ORTHO05D005961 2.8e-178 630.2 1002 39.8
Eucgr.I01567 Eucalyptus grandis HOM05D004959 ORTHO05D005961 3.6e-178 629.8 990 39.7
MD16G1229900 Malus domestica HOM05D004959 ORTHO05D005961 2.0e-176 624.0 885 44.1
DCAR_026905 Daucus carota HOM05D004959 ORTHO05D005961 6.4e-175 619.0 1015 39.2
Sopen02g014720 Solanum pennellii HOM05D004959 ORTHO05D005961 7.1e-174 615.5 1000 38.2
PSO161G0046 Papaver somniferum HOM05D004959 ORTHO05D005961 9.3e-174 615.1 810 45.6
Glyma.13G054500 Glycine max HOM05D004959 ORTHO05D005961 1.5e-171 607.8 963 38.8
Glyma.19G032700 Glycine max HOM05D004959 ORTHO05D005961 3.6e-170 603.2 989 38.3
Solyc02g064590.2 Solanum lycopersicum HOM05D004959 ORTHO05D005961 1.4e-169 601.3 999 37.4
Solyc02g064620.2 Solanum lycopersicum HOM05D004959 ORTHO05D005961 1.4e-169 601.3 999 37.4
Migut.E00705 Erythranthe guttata HOM05D004959 ORTHO05D005961 5.3e-169 599.4 998 38.0
Phvul.004G026300 Phaseolus vulgaris HOM05D004959 ORTHO05D005961 3.4e-168 596.7 1004 38.8
Hma1.2p1_0286F.1_g114200 Hydrangea macrophylla HOM05D004959 ORTHO05D005961 9.3e-166 588.6 671 47.1
AL7G33790 Arabidopsis lyrata HOM05D004959 ORTHO05D005961 1.1e-163 581.6 1000 37.0
Migut.E00612 Erythranthe guttata HOM05D004959 ORTHO05D005961 1.1e-163 581.6 1000 37.3
EL10Ac2g04300 Beta vulgaris HOM05D004959 ORTHO05D005961 5.6e-163 579.3 1005 36.0
BolC1t01373H Brassica oleracea HOM05D004959 ORTHO05D005961 7.4e-163 578.9 1001 37.8
VMungo0464G0163 Vigna mungo HOM05D004959 ORTHO05D005961 7.4e-163 578.9 1003 37.8
CARHR226870 Cardamine hirsuta HOM05D004959 ORTHO05D005961 9.6e-163 578.6 999 37.7
HanXRQChr12g0366411 Helianthus annuus HOM05D004959 ORTHO05D005961 3.7e-162 576.6 1003 38.0
HPP92_024644 Vanilla planifolia HOM05D004959 ORTHO05D005961 2.6e-160 570.5 1043 35.3
Thhalv10024260m.g Eutrema salsugineum HOM05D004959 ORTHO05D005961 3.4e-160 570.1 1002 36.7
AT4G20060 Arabidopsis thaliana HOM05D004959 ORTHO05D005961 7.6e-160 568.9 1000 36.9
C01p14060 Brassica napus HOM05D004959 ORTHO05D005961 1.3e-159 568.2 1003 37.1
AUR62012329 Chenopodium quinoa HOM05D004959 ORTHO05D005961 1.4e-158 564.7 996 35.6
AUR62022971 Chenopodium quinoa HOM05D004959 ORTHO05D005961 4.2e-158 563.1 1001 35.4
BraA01t01128Z Brassica rapa HOM05D004959 ORTHO05D005961 1.6e-157 561.2 1012 36.5
ECA233G2209 Erigeron canadensis HOM05D004959 ORTHO05D005961 2.1e-157 560.8 1005 37.4
BcaNung06192 Brassica carinata HOM05D004959 ORTHO05D005961 1.8e-156 557.8 1006 37.1
HanXRQChr04g0121291 Helianthus annuus HOM05D004959 ORTHO05D005961 6.9e-153 545.8 1003 36.7
Carub.0007s2107 Capsella rubella HOM05D004959 ORTHO05D005961 1.7e-151 541.2 1000 35.9
Aa31LG6G2470 Aethionema arabicum HOM05D004959 ORTHO05D005961 3.8e-151 540.0 997 36.0
Sp7g18520 Schrenkiella parvula HOM05D004959 ORTHO05D005961 2.5e-150 537.3 1002 35.9
A01p11860 Brassica napus HOM05D004959 ORTHO05D005961 8.2e-146 522.3 967 36.0
SGA_v2.0_scaffold36G14263 Striga asiatica HOM05D004959 ORTHO05D005961 2.9e-143 513.8 994 36.0
Peaxi162Scf00449g00320 Petunia axillaris HOM05D004959 ORTHO05D005961 1.6e-141 508.1 909 36.0
Ah.09g226960 Amaranthus hybridus HOM05D004959 ORTHO05D005961 8.8e-140 502.3 990 33.0
Lsat_1_v5_gn_8_33541 Lactuca sativa HOM05D004959 ORTHO05D005961 2.1e-133 481.1 1000 35.5
SEGI_31831 Sequoiadendron giganteum HOM05D004959 ORTHO05D005961 6.7e-132 476.1 1086 31.9
SHI28141 Sapria himalayana HOM05D004959 ORTHO05D005961 2.8e-130 470.7 915 35.0
Zm00001eb126950 Zea mays HOM05D004959 ORTHO05D005961 1.2e-128 465.3 1068 30.3
SGA_v2.0_scaffold99G29470 Striga asiatica HOM05D004959 ORTHO05D005961 1.1e-126 458.8 977 34.9
Aqoxy5G03191 Aquilegia oxysepala HOM05D004959 ORTHO05D005961 5.4e-89 333.6 509 40.1
Oeu021362.1 Olea europaea HOM05D004959 ORTHO05D005961 1.0e-87 329.3 433 42.0
CDE04G1301 Ceratophyllum demersum HOM05D004959 ORTHO05D005961 7.1e-73 280.0 427 41.0
Mapoly0306s0002 Marchantia polymorpha HOM05D004959 ORTHO05D005961 1.9e-62 245.4 1080 25.2
Pp3c21_2460 Physcomitrium patens HOM05D004959 ORTHO05D005961 2.8e-61 241.5 1102 25.0
Aqoxy5G03189 Aquilegia oxysepala HOM05D004959 ORTHO05D005961 8.4e-50 203.4 219 48.4
CDE04G2317 Ceratophyllum demersum HOM05D004959 ORTHO05D005961 3.9e-47 194.5 431 32.7
CAN.G370.71 Capsicum annuum HOM05D004959 ORTHO05D005961 3.7e-45 188.0 271 43.2
AagrBONN_evm.TU.Sc2ySwM_228.5373 Anthoceros agrestis HOM05D004959 ORTHO05D005961 4.8e-45 187.6 957 24.1
Phvul.005G124501 Phaseolus vulgaris HOM05D004959 ORTHO05D005961 6.7e-39 167.2 304 36.5
unitig_46.g18488 Utricularia gibba HOM05D004959 ORTHO05D005961 7.6e-35 153.7 263 36.1
Phvul.005G124551 Phaseolus vulgaris HOM05D004959 ORTHO05D005961 1.3e-31 142.9 296 34.1
SMO111G0127 Selaginella moellendorffii HOM05D004959 ORTHO05D005961 2.2e-29 135.6 684 24.0
LjContig00564g0005645 Lotus japonicus HOM05D004959 ORTHO05D005961 3.4e-27 128.3 127 56.7
Psat7g167160 Pisum sativum HOM05D004959 ORTHO05D005961 7.7e-27 127.1 126 57.1
LjContig00564g0002415 Lotus japonicus HOM05D004959 ORTHO05D005961 5.0e-26 124.4 127 55.9
Lalb_Chr19g0135221 Lupinus albus HOM05D004959 ORTHO05D005961 2.5e-25 122.1 135 51.1
Medtr4g078330 Medicago truncatula HOM05D004959 ORTHO05D005961 2.5e-25 122.1 132 53.8
Ca_18944_v3 Cicer arietinum L. HOM05D004959 ORTHO05D005961 9.4e-25 120.2 126 54.0
Atru.chr10.384 Acer truncatum HOM05D004959 ORTHO05D005961 7.9e-24 117.1 228 34.2
Peaxi162Scf00449g00321 Petunia axillaris HOM05D004959 ORTHO05D005961 5.0e-18 97.8 97 58.8
Psat2g088000 Pisum sativum HOM05D004959 ORTHO05D005961 8.5e-18 97.1 95 57.9
TPR.G940 Trifolium pratense HOM05D004959 ORTHO05D005961 3.2e-17 95.1 107 50.5
arahy.Tifrunner.gnm1.ann1.C6XSUD Arachis hypogaea HOM05D004959 ORTHO05D005961 6.1e-16 90.9 134 42.5
Lj3g0004583 Lotus japonicus HOM05D004959 ORTHO05D005961 1.4e-15 89.7 148 42.6
Os01g0103700 Oryza sativa ssp. japonica HOM05D004959 ORTHO05D005961 1.1e-14 86.7 135 36.3
BcaB03g11657 Brassica carinata HOM05D004959 ORTHO05D005961 2.0e-14 85.9 174 34.5
arahy.Tifrunner.gnm1.ann1.WXF40H Arachis hypogaea HOM05D004959 ORTHO05D005961 3.3e-14 85.1 134 40.3
Dinv16431 Davidia involucrata HOM05D004959 ORTHO05D005961 2.6e-11 75.5 106 43.4
BolC3t20554H Brassica oleracea HOM05D004959 ORTHO05D005961 2.2e-10 72.4 50 64.0
BcaC01g00652 Brassica carinata HOM05D004959 ORTHO05D005961 2.9e-10 72.0 46 69.6
CBR_g16049 Chara braunii HOM05D004959 ORTHO05D005961 2.9e-10 72.0 215 27.4
C03p82730 Brassica napus HOM05D004959 ORTHO05D005961 6.5e-10 70.9 46 67.4
BcaC01g00655 Brassica carinata HOM05D004959 ORTHO05D005961 4.2e-09 68.2 122 41.0
SHI28140 Sapria himalayana HOM05D004959 ORTHO05D005961 2.1e-08 65.9 78 51.3
C03p82750 Brassica napus HOM05D000005 ORTHO05D000449 1.0e-07 63.5 64 51.6
CDE04G0396 Ceratophyllum demersum HOM05D004959 ORTHO05D005961 1.0e-07 63.5 68 45.6
BolC3t20557H Brassica oleracea HOM05D000005 ORTHO05D000449 1.4e-07 63.2 63 52.4


User provided reference genes

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