Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR622G1169 Trochodendron aralioides HOM05D005184 ORTHO05D006222 1.1e-93 346.7 178 100.0
Nn4g22873 Nelumbo nucifera HOM05D005184 ORTHO05D006222 3.1e-64 248.8 167 77.2
TAR374G1061 Trochodendron aralioides HOM05D005184 ORTHO05D006222 9.0e-64 247.3 166 77.1
Cfa009129 Carpinus fangiana HOM05D005184 ORTHO05D006222 2.9e-62 242.3 167 76.0
CANSAT01G1514 Cannabis sativa HOM05D005184 ORTHO05D006222 4.9e-62 241.5 164 76.8
Haze_12160 Corylus avellana HOM05D005184 ORTHO05D006222 2.4e-61 239.2 152 80.3
CiPaw.05G149300 Carya illinoinensis HOM05D005184 ORTHO05D006222 5.4e-61 238.0 162 75.3
Cpa.g.sc5.359 Carica papaya HOM05D005184 ORTHO05D006222 2.7e-60 235.7 160 73.8
Potri.008G146200 Populus trichocarpa HOM05D005184 ORTHO05D006222 3.5e-60 235.3 168 72.0
PSO478G1620 Papaver somniferum HOM05D005184 ORTHO05D006222 7.8e-60 234.2 169 72.2
COL.COLO4_19542 Corchorus olitorius HOM05D005184 ORTHO05D006222 1.3e-59 233.4 158 75.9
Duzib268G0446 Durio zibethinus HOM05D005184 ORTHO05D006222 2.3e-59 232.6 158 75.3
FAN17G0007 Fragaria x ananassa HOM05D005184 ORTHO05D006222 2.3e-59 232.6 153 77.1
FAN22G1244 Fragaria x ananassa HOM05D005184 ORTHO05D006222 2.3e-59 232.6 153 77.1
ClCG05G025100 Citrullus lanatus HOM05D005184 ORTHO05D006222 3.0e-59 232.3 171 70.8
FAN12G2936 Fragaria x ananassa HOM05D005184 ORTHO05D006222 3.0e-59 232.3 153 76.5
RcHm_v2.0_Chr5g0030111 Rosa chinensis HOM05D005184 ORTHO05D006222 5.1e-59 231.5 169 71.0
FAN07G0314 Fragaria x ananassa HOM05D005184 ORTHO05D006222 8.7e-59 230.7 153 75.8
CsaV3_5G031800 Cucumis sativus L. HOM05D005184 ORTHO05D006222 1.1e-58 230.3 164 73.2
Manes.01G197300 Manihot esculenta HOM05D005184 ORTHO05D006222 1.9e-58 229.6 162 72.2
Thecc.02G243600 Theobroma cacao HOM05D005184 ORTHO05D006222 1.9e-58 229.6 158 74.7
CDE06G1803 Ceratophyllum demersum HOM05D005184 ORTHO05D006222 2.5e-58 229.2 150 76.0
Aqoxy3G03072 Aquilegia oxysepala HOM05D005184 ORTHO05D006222 3.3e-58 228.8 166 70.5
MD16G1088100 Malus domestica HOM05D005184 ORTHO05D006222 5.6e-58 228.0 162 72.8
PSO017G3562 Papaver somniferum HOM05D005184 ORTHO05D006222 5.6e-58 228.0 167 71.3
PGR119G0379 Punica granatum HOM05D005184 ORTHO05D006222 7.3e-58 227.6 162 71.6
Gohir.D01G129700 Gossypium hirsutum HOM05D005184 ORTHO05D006222 9.6e-58 227.3 158 73.4
FvH4_4g34930 Fragaria vesca HOM05D005184 ORTHO05D006222 1.3e-57 226.9 163 69.9
Ca_22770_v3 Cicer arietinum L. HOM05D005184 ORTHO05D006222 2.1e-57 226.1 163 72.4
Lsat_1_v5_gn_4_6340 Lactuca sativa HOM05D005184 ORTHO05D006222 2.1e-57 226.1 169 69.8
Atru.chr11.1971 Acer truncatum HOM05D005184 ORTHO05D006222 3.6e-57 225.3 162 71.6
Gohir.A01G139200 Gossypium hirsutum HOM05D005184 ORTHO05D006222 3.6e-57 225.3 158 72.8
Medtr8g063230 Medicago truncatula HOM05D005184 ORTHO05D006222 1.4e-56 223.4 173 68.2
HanXRQChr04g0103681 Helianthus annuus HOM05D005184 ORTHO05D006222 1.8e-56 223.0 164 69.5
MSTRG.614 Avicennia marina HOM05D005184 ORTHO05D006222 2.4e-56 222.6 170 71.2
Cc11_g14330 Coffea canephora HOM05D005184 ORTHO05D006222 3.1e-56 222.2 170 68.2
MD13G1087800 Malus domestica HOM05D005184 ORTHO05D006222 3.1e-56 222.2 176 65.9
Ciclev10032867m.g Citrus clementina HOM05D005184 ORTHO05D006222 4.0e-56 221.9 160 71.2
Sabra10G0068200 Salix brachista HOM05D005184 ORTHO05D006222 4.0e-56 221.9 172 68.0
Potri.010G095601 Populus trichocarpa HOM05D005184 ORTHO05D006222 1.2e-55 220.3 170 68.2
Actinidia27771 Actinidia chinensis HOM05D005184 ORTHO05D006222 1.5e-55 219.9 168 69.0
TPR.G32980 Trifolium pratense HOM05D005184 ORTHO05D006222 1.5e-55 219.9 166 69.3
Lj4g0016473 Lotus japonicus HOM05D005184 ORTHO05D006222 5.8e-55 218.0 162 70.4
Migut.E00145 Erythranthe guttata HOM05D005184 ORTHO05D006222 7.6e-55 217.6 160 70.6
Rhsim12G0048500 Rhododendron simsii HOM05D005184 ORTHO05D006222 7.6e-55 217.6 191 62.8
Phvul.003G054400 Phaseolus vulgaris HOM05D005184 ORTHO05D006222 9.9e-55 217.2 161 70.8
VMungo0251G1371 Vigna mungo HOM05D005184 ORTHO05D006222 9.9e-55 217.2 162 69.8
Glyma.08G290400 Glycine max HOM05D005184 ORTHO05D006222 1.3e-54 216.9 162 69.8
Lalb_Chr11g0071121 Lupinus albus HOM05D005184 ORTHO05D006222 1.7e-54 216.5 163 68.7
CDE04G2481 Ceratophyllum demersum HOM05D006272 ORTHO05D006222 4.9e-54 214.9 184 63.0
Glyma.18G133800 Glycine max HOM05D005184 ORTHO05D006222 4.9e-54 214.9 158 70.9
MELO3C012019.2 Cucumis melo HOM05D005184 ORTHO05D006222 1.4e-53 213.4 149 73.8
Eucgr.B02549 Eucalyptus grandis HOM05D005184 ORTHO05D006222 1.4e-53 213.4 176 64.2
Oeu039485.1 Olea europaea HOM05D005184 ORTHO05D006222 1.4e-53 213.4 166 66.9
TWI18G1303 Tripterygium wilfordii HOM05D005184 ORTHO05D006222 2.4e-53 212.6 165 66.7
ECA234G0428 Erigeron canadensis HOM05D005184 ORTHO05D003386 7.1e-53 211.1 160 67.5
Gorai.002G161300 Gossypium raimondii HOM05D005184 ORTHO05D006222 2.1e-52 209.5 193 60.1
HPP92_015265 Vanilla planifolia HOM05D000076 ORTHO05D002949 2.1e-52 209.5 175 64.0
AUR62005318 Chenopodium quinoa HOM05D005184 ORTHO05D006222 4.6e-52 208.4 123 84.6
arahy.Tifrunner.gnm1.ann1.GIV1JF Arachis hypogaea HOM05D005184 ORTHO05D006222 7.9e-52 207.6 163 67.5
GSVIVG01020163001 Vitis vinifera HOM05D005184 ORTHO05D006222 1.8e-51 206.5 132 78.0
Sc04g0008930 Simmondsia chinensis HOM05D005184 ORTHO05D006222 3.0e-51 205.7 166 68.1
Oeu040755.2 Olea europaea HOM05D005184 ORTHO05D006222 3.9e-51 205.3 160 66.9
CSS0034024 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 5.1e-51 204.9 163 66.3
CSS0049337 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 6.7e-51 204.5 167 65.9
Psat4g125480 Pisum sativum HOM05D005184 ORTHO05D006222 9.6e-50 200.7 172 65.1
Mapoly0065s0085 Marchantia polymorpha HOM05D005184 ORTHO05D006222 1.3e-49 200.3 162 63.0
CSS0002866 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 1.6e-49 199.9 167 64.1
unitig_749.g13268 Utricularia gibba HOM05D005184 ORTHO05D006222 4.8e-49 198.4 187 57.8
Lj3A1049G57 Lonicera japonica HOM05D005184 ORTHO05D006222 1.4e-48 196.8 118 80.5
Medtr8g461280 Medicago truncatula HOM05D005184 ORTHO05D006222 1.4e-48 196.8 156 65.4
Os02g0741900 Oryza sativa ssp. japonica HOM05D005184 ORTHO05D006222 1.4e-48 196.8 161 64.0
CSS0009826 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 1.8e-48 196.4 170 62.4
Zm00001eb254250 Zea mays HOM05D005184 ORTHO05D006222 5.3e-48 194.9 164 62.2
Zm00001eb194690 Zea mays HOM05D005184 ORTHO05D006222 9.0e-48 194.1 164 61.6
ATR1149G050 Amborella trichopoda HOM05D005184 ORTHO05D006222 1.2e-47 193.7 120 80.8
SGA_v2.0_scaffold166G38348 Striga asiatica HOM05D005184 ORTHO05D006222 3.4e-47 192.2 157 65.6
CSS0033197 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 4.5e-47 191.8 168 63.7
arahy.Tifrunner.gnm1.ann1.G4BVC6 Arachis hypogaea HOM05D005184 ORTHO05D006222 2.1e-44 183.0 222 50.0
AagrBONN_evm.TU.Sc2ySwM_344.3206 Anthoceros agrestis HOM05D005184 ORTHO05D006222 2.3e-43 179.5 159 57.2
Hund05960 Selenicereus undatus HOM05D005184 ORTHO05D006222 2.3e-43 179.5 110 80.9
Nitab4.5_0000031g0060 Nicotiana tabacum HOM05D005184 ORTHO05D006222 1.5e-42 176.8 207 49.3
RcHm_v2.0_Chr1g0347741 Rosa chinensis HOM05D005184 ORTHO05D006222 1.9e-42 176.4 149 63.8
RcHm_v2.0_Chr3g0467191 Rosa chinensis HOM05D005184 ORTHO05D006222 3.3e-42 175.6 169 58.6
DCAR_007099 Daucus carota HOM05D005184 ORTHO05D006222 4.8e-41 171.8 166 59.0
RcHm_v2.0_Chr4g0444381 Rosa chinensis HOM05D005184 ORTHO05D006222 1.1e-40 170.6 98 85.7
CBR_g30806 Chara braunii HOM05D005184 ORTHO05D006222 1.2e-39 167.2 162 54.3
CBR_g30798 Chara braunii HOM05D005184 ORTHO05D006222 4.5e-39 165.2 162 53.7
Pp3c1_7410 Physcomitrium patens HOM05D005184 ORTHO05D006222 4.5e-39 165.2 166 54.2
SMO117G0191 Selaginella moellendorffii HOM05D005184 ORTHO05D006222 7.6e-39 164.5 160 54.4
Prupe.1G258500 Prunus persica HOM05D005184 ORTHO05D006222 1.3e-38 163.7 111 73.9
THA.LOC104822060 Tarenaya hassleriana HOM05D005184 ORTHO05D006222 2.9e-38 162.5 166 53.0
Carub.0001s2347 Capsella rubella HOM05D005184 ORTHO05D006222 8.4e-38 161.0 173 51.4
THA.LOC104808902 Tarenaya hassleriana HOM05D005184 ORTHO05D006222 8.4e-38 161.0 171 50.9
RcHm_v2.0_Chr2g0143691 Rosa chinensis HOM05D005184 ORTHO05D006222 1.9e-37 159.8 149 59.1
Aa31LG7G7840 Aethionema arabicum HOM05D005184 ORTHO05D006222 2.1e-36 156.4 170 51.8
RcHm_v2.0_Chr7g0224821 Rosa chinensis HOM05D005184 ORTHO05D006222 4.6e-36 155.2 128 64.8
AL1G37810 Arabidopsis lyrata HOM05D005184 ORTHO05D006222 1.0e-35 154.1 174 50.6
Thhalv10009785m.g Eutrema salsugineum HOM05D005184 ORTHO05D006222 1.3e-35 153.7 164 51.8
BcaC05g26302 Brassica carinata HOM05D005184 ORTHO05D006222 3.9e-35 152.1 163 51.5
C05p23190 Brassica napus HOM05D001690 ORTHO05D009096 8.7e-35 151.0 171 51.5
Sed0020204 Sechium edule HOM05D005184 ORTHO05D006222 8.7e-35 151.0 131 64.1
Sp1g21380 Schrenkiella parvula HOM05D005184 ORTHO05D006222 1.1e-34 150.6 160 51.9
AT1G24050 Arabidopsis thaliana HOM05D005184 ORTHO05D006222 1.9e-34 149.8 173 49.1
Pp3c7_23840 Physcomitrium patens HOM05D005184 ORTHO05D006222 1.9e-34 149.8 123 61.8
Duzib248G0500 Durio zibethinus HOM05D005184 ORTHO05D006222 3.3e-34 149.1 132 62.1
A09p40800 Brassica napus HOM05D001690 ORTHO05D009096 9.7e-34 147.5 169 49.7
BolC5t31020H Brassica oleracea HOM05D005184 ORTHO05D006222 9.7e-34 147.5 164 51.2
BcaB07g32379 Brassica carinata HOM05D005184 ORTHO05D006222 2.2e-33 146.4 156 52.6
BraA07t29118Z Brassica rapa HOM05D005184 ORTHO05D006222 6.3e-33 144.8 166 48.2
C07p20080 Brassica napus HOM05D005184 ORTHO05D006222 1.1e-32 144.1 166 47.6
BolC7t42528H Brassica oleracea HOM05D005184 ORTHO05D006222 1.1e-32 144.1 166 47.6
BraA09t39575Z Brassica rapa HOM05D005184 ORTHO05D006222 1.1e-32 144.1 164 50.6
Phvul.003G054101 Phaseolus vulgaris HOM05D005184 ORTHO05D006222 6.9e-32 141.4 121 62.8
EL10Ac6g13619 Beta vulgaris HOM05D005184 ORTHO05D006222 2.9e-30 136.0 146 53.4
Cc02_g24860 Coffea canephora HOM05D005184 ORTHO05D006222 5.5e-29 131.7 87 72.4
vmacro22616 Vaccinium macrocarpon HOM05D005184 ORTHO05D006222 1.2e-28 130.6 83 79.5
C02p27410 Brassica napus HOM05D005184 ORTHO05D006222 4.6e-28 128.6 170 43.5
BolC2t08801H Brassica oleracea HOM05D005184 ORTHO05D006222 6.1e-28 128.3 170 43.5
BcaB03g14122 Brassica carinata HOM05D005184 ORTHO05D006222 7.9e-28 127.9 110 58.2
BcaC03g15168 Brassica carinata HOM05D005184 ORTHO05D006222 3.0e-27 125.9 170 42.9
CSS0000441 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 3.9e-27 125.6 122 59.8
BraA02t06699Z Brassica rapa HOM05D005184 ORTHO05D006222 1.1e-26 124.0 165 43.6
AL2G29520 Arabidopsis lyrata HOM05D005184 ORTHO05D006222 3.7e-25 119.0 160 45.0
BcaC06g35075 Brassica carinata HOM05D005184 ORTHO05D006222 4.8e-25 118.6 142 46.5
CARHR024350 Cardamine hirsuta HOM05D005184 ORTHO05D006222 8.2e-25 117.9 136 50.0
A02p16400 Brassica napus HOM05D005184 ORTHO05D006222 1.1e-24 117.5 118 51.7
Carub.0002s1692 Capsella rubella HOM05D005184 ORTHO05D006222 4.1e-24 115.5 174 42.5
Sp5g25350 Schrenkiella parvula HOM05D005184 ORTHO05D006222 4.1e-24 115.5 165 42.4
Thhalv10019170m.g Eutrema salsugineum HOM05D005184 ORTHO05D006222 6.9e-24 114.8 117 52.1
BcaB05g24540 Brassica carinata HOM05D005184 ORTHO05D006222 2.7e-20 102.8 127 45.7
CARHR063340 Cardamine hirsuta HOM05D005184 ORTHO05D006222 6.1e-20 101.7 172 38.4
AT1G70220 Arabidopsis thaliana HOM05D005184 ORTHO05D006222 1.4e-19 100.5 170 37.6
Cc00_g31660 Coffea canephora HOM05D005184 ORTHO05D006222 2.4e-16 89.7 127 44.9
A07p13470 Brassica napus HOM05D005184 ORTHO05D006222 1.2e-15 87.4 166 34.9
Cre10.g421850 Chlamydomonas reinhardtii HOM05D005184 ORTHO05D006222 6.5e-14 81.6 176 31.2
QL03p062286 Quercus lobata HOM05D005184 ORTHO05D006222 6.5e-14 81.6 49 79.6
Peaxi162Scf00792g00021 Petunia axillaris HOM05D005184 ORTHO05D006222 1.4e-13 80.5 41 90.2
MCO16G256 Micromonas commoda HOM05D005184 ORTHO05D006222 7.2e-13 78.2 77 54.5
BcaB02g09680 Brassica carinata HOM05D000630 ORTHO05D014858 1.2e-12 77.4 79 53.2
Nitab4.5_0000925g0110 Nicotiana tabacum HOM05D005184 ORTHO05D006222 1.6e-12 77.0 43 81.4
Solyc04g025670.4 Solanum lycopersicum HOM05D005184 ORTHO05D006222 2.1e-12 76.6 42 83.3
Prupe.1G258600 Prunus persica HOM05D005184 ORTHO05D006222 3.6e-12 75.9 42 85.7
PRCOL_00005775 Prasinoderma coloniale HOM05D005184 ORTHO05D006222 1.0e-11 74.3 85 42.4
vmacro22617 Vaccinium macrocarpon HOM05D005184 ORTHO05D006222 1.4e-11 73.9 42 81.0
CSS0046251 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 6.7e-11 71.6 42 78.6
Cc00_g05590 Coffea canephora HOM05D005184 ORTHO05D006222 4.8e-09 65.5 85 44.7


User provided reference genes

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