Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR622G1143 Trochodendron aralioides HOM05D004323 ORTHO05D005140 5.1e-166 587.8 323 100.0
TAR629G2255 Trochodendron aralioides HOM05D004323 ORTHO05D005140 1.0e-126 457.2 325 80.6
CSS0029895 Camellia sinensis var. sinensis HOM05D004323 ORTHO05D005140 3.7e-108 395.6 286 73.4
Nn4g24090 Nelumbo nucifera HOM05D004323 ORTHO05D005140 3.7e-108 395.6 323 75.9
GSVIVG01030895001 Vitis vinifera HOM05D004323 ORTHO05D005140 4.1e-107 392.1 292 71.6
Dinv19000 Davidia involucrata HOM05D004323 ORTHO05D005140 1.6e-106 390.2 281 73.7
Dinv14868 Davidia involucrata HOM05D004323 ORTHO05D005140 2.7e-103 379.4 279 73.1
Haze_14209 Corylus avellana HOM05D004323 ORTHO05D007831 4.4e-101 372.1 308 65.3
Cfa007861 Carpinus fangiana HOM05D004323 ORTHO05D007831 3.1e-99 365.9 281 69.8
Rhsim10G0078500 Rhododendron simsii HOM05D004323 ORTHO05D005140 2.0e-98 363.2 302 67.2
vmacro05495 Vaccinium macrocarpon HOM05D004323 ORTHO05D005140 2.7e-98 362.8 287 69.3
MBI16_g32956_MAGBIO Magnolia biondii HOM05D004323 ORTHO05D005140 5.0e-97 358.6 253 76.7
Hma1.2p1_0500F.1_g166900 Hydrangea macrophylla HOM05D004323 ORTHO05D005140 2.7e-95 352.8 320 63.1
Hma1.2p1_1820F.1_g304196 Hydrangea macrophylla HOM05D004323 ORTHO05D005140 2.7e-95 352.8 320 63.1
Haze_11028 Corylus avellana HOM05D004323 ORTHO05D005140 1.8e-94 350.1 323 67.2
Cfa008584 Carpinus fangiana HOM05D004323 ORTHO05D005140 3.0e-94 349.4 288 65.6
CiPaw.03G067400 Carya illinoinensis HOM05D004323 ORTHO05D005140 1.3e-92 344.0 285 64.2
Potri.010G114900 Populus trichocarpa HOM05D004323 ORTHO05D005140 8.3e-92 341.3 320 65.6
CiPaw.05G248000 Carya illinoinensis HOM05D004323 ORTHO05D005140 5.4e-91 338.6 283 63.6
FAN07G1710 Fragaria x ananassa HOM05D004323 ORTHO05D005140 2.0e-90 336.7 286 64.3
RcHm_v2.0_Chr4g0440951 Rosa chinensis HOM05D004323 ORTHO05D005140 2.0e-90 336.7 321 66.4
QL01p002128 Quercus lobata HOM05D004323 ORTHO05D005140 4.5e-90 335.5 329 67.2
Thecc.04G123700 Theobroma cacao HOM05D004323 ORTHO05D005140 5.9e-90 335.1 294 64.3
Duzib133G0462 Durio zibethinus HOM05D004323 ORTHO05D005140 7.7e-90 334.7 292 64.7
FvH4_4g32210 Fragaria vesca HOM05D004323 ORTHO05D005140 1.0e-89 334.3 286 63.3
FAN12G1900 Fragaria x ananassa HOM05D004323 ORTHO05D005140 1.0e-89 334.3 286 63.3
Potri.008G127900 Populus trichocarpa HOM05D004323 ORTHO05D005140 1.0e-89 334.3 283 62.9
Ciclev10015960m.g Citrus clementina HOM05D004323 ORTHO05D005140 5.0e-89 332.0 286 64.3
FAN22G0457 Fragaria x ananassa HOM05D004323 ORTHO05D005140 1.1e-88 330.9 286 63.6
FAN17G1549 Fragaria x ananassa HOM05D004323 ORTHO05D005140 2.5e-88 329.7 286 62.9
Prupe.1G322700 Prunus persica HOM05D004323 ORTHO05D005140 4.2e-88 328.9 325 65.5
Cc07_g08280 Coffea canephora HOM05D004323 ORTHO05D005140 7.2e-88 328.2 289 65.4
Manes.02G073900 Manihot esculenta HOM05D004323 ORTHO05D005140 1.2e-87 327.4 292 63.0
Lj2C436T13 Lonicera japonica HOM05D004323 ORTHO05D005140 3.6e-87 325.9 323 58.5
Glyma.10G264800 Glycine max HOM05D004323 ORTHO05D005140 1.0e-86 324.3 323 64.7
Psat7g004960 Pisum sativum HOM05D004323 ORTHO05D005140 1.0e-86 324.3 323 64.4
Ca_17253_v3 Cicer arietinum L. HOM05D004323 ORTHO05D005140 1.4e-86 323.9 324 64.2
Dinv33986 Davidia involucrata HOM05D004323 ORTHO05D005140 2.3e-86 323.2 235 72.3
COL.COLO4_27122 Corchorus olitorius HOM05D004323 ORTHO05D005140 4.0e-86 322.4 293 63.1
Sabra10G0085000 Salix brachista HOM05D004323 ORTHO05D005140 4.0e-86 322.4 284 63.0
DCAR_010732 Daucus carota HOM05D004323 ORTHO05D005140 5.2e-86 322.0 295 61.0
Glyma.20G125700 Glycine max HOM05D004323 ORTHO05D005140 5.2e-86 322.0 323 64.4
Gorai.007G185800 Gossypium raimondii HOM05D004323 ORTHO05D005140 5.2e-86 322.0 289 61.9
arahy.Tifrunner.gnm1.ann1.B1S40C Arachis hypogaea HOM05D004323 ORTHO05D005140 8.9e-86 321.2 288 61.1
arahy.Tifrunner.gnm1.ann1.JPDL6B Arachis hypogaea HOM05D004323 ORTHO05D005140 8.9e-86 321.2 288 61.1
Gohir.D11G173500 Gossypium hirsutum HOM05D004323 ORTHO05D005140 8.9e-86 321.2 289 61.9
Sc14g0004810 Simmondsia chinensis HOM05D004323 ORTHO05D005140 8.9e-86 321.2 302 62.3
Eucgr.C01716 Eucalyptus grandis HOM05D004323 ORTHO05D005140 2.6e-85 319.7 320 61.6
CsaV3_5G010330 Cucumis sativus L. HOM05D004323 ORTHO05D005140 4.4e-85 318.9 339 63.1
Ciclev10012163m.g Citrus clementina HOM05D004323 ORTHO05D005140 5.7e-85 318.5 290 63.4
CAN.G625.75 Capsicum annuum HOM05D004323 ORTHO05D005140 1.7e-84 317.0 287 61.0
CDE09G0723 Ceratophyllum demersum HOM05D004323 ORTHO05D005140 2.2e-84 316.6 292 61.6
Aqoxy3G03961 Aquilegia oxysepala HOM05D004323 ORTHO05D005140 3.7e-84 315.8 286 61.9
Gohir.A11G167200 Gossypium hirsutum HOM05D004323 ORTHO05D005140 3.7e-84 315.8 290 61.0
Atru.chr11.379 Acer truncatum HOM05D004323 ORTHO05D005140 6.3e-84 315.1 321 65.4
HPP92_006392 Vanilla planifolia HOM05D004323 ORTHO05D005140 6.3e-84 315.1 275 63.3
Os01g0507500 Oryza sativa ssp. japonica HOM05D004323 ORTHO05D005140 1.4e-83 313.9 280 65.0
MD13G1027200 Malus domestica HOM05D004323 ORTHO05D005140 3.1e-83 312.8 288 60.1
Zm00001eb217130 Zea mays HOM05D004323 ORTHO05D005140 3.1e-83 312.8 288 62.8
Atru.chr1.1769 Acer truncatum HOM05D004323 ORTHO05D005140 4.1e-83 312.4 287 60.3
VMungo0720G0280 Vigna mungo HOM05D004323 ORTHO05D005140 7.0e-83 311.6 283 59.4
Manes.15G126000 Manihot esculenta HOM05D004323 ORTHO05D005140 9.2e-83 311.2 323 65.9
Prupe.3G151600 Prunus persica HOM05D004323 ORTHO05D005140 1.2e-82 310.8 296 60.8
Nitab4.5_0003598g0060 Nicotiana tabacum HOM05D004323 ORTHO05D005140 2.7e-82 309.7 300 57.3
Zm00001eb053510 Zea mays HOM05D004323 ORTHO05D005140 2.7e-82 309.7 281 63.7
CANSAT01G2279 Cannabis sativa HOM05D004323 ORTHO05D005140 4.5e-82 308.9 334 62.6
Sabra08G0096600 Salix brachista HOM05D004323 ORTHO05D005140 1.3e-81 307.4 264 61.0
Sed0006370 Sechium edule HOM05D004323 ORTHO05D005140 1.3e-81 307.4 338 60.4
Psat7g006200 Pisum sativum HOM05D004323 ORTHO05D005140 2.3e-81 306.6 323 61.9
PSO063G1150 Papaver somniferum HOM05D004323 ORTHO05D005140 2.9e-81 306.2 307 61.2
PSO782G4339 Papaver somniferum HOM05D004323 ORTHO05D005140 2.9e-81 306.2 305 61.0
HanXRQChr12g0375961 Helianthus annuus HOM05D004323 ORTHO05D005140 8.6e-81 304.7 329 61.1
Lalb_Chr02g0145481 Lupinus albus HOM05D004323 ORTHO05D005140 8.6e-81 304.7 288 59.0
Medtr8g105830 Medicago truncatula HOM05D004323 ORTHO05D005140 8.6e-81 304.7 329 61.4
Lj5g0025367 Lotus japonicus HOM05D004323 ORTHO05D005140 1.1e-80 304.3 322 62.4
Potri.004G092200 Populus trichocarpa HOM05D004323 ORTHO05D005140 3.3e-80 302.8 280 60.4
Lj5g0009857 Lotus japonicus HOM05D004323 ORTHO05D005140 7.3e-80 301.6 324 61.4
Phvul.007G037100 Phaseolus vulgaris HOM05D004323 ORTHO05D005140 7.3e-80 301.6 323 61.9
PGSC0003DMG400030599 Solanum tuberosum HOM05D004323 ORTHO05D005140 7.3e-80 301.6 289 57.8
Solyc02g091270.3 Solanum lycopersicum HOM05D004323 ORTHO05D005140 1.2e-79 300.8 285 58.6
Migut.L00479 Erythranthe guttata HOM05D004323 ORTHO05D005140 1.6e-79 300.4 300 57.7
TWI53G1939 Tripterygium wilfordii HOM05D004323 ORTHO05D005140 2.8e-79 299.7 291 61.2
Lalb_Chr06g0165621 Lupinus albus HOM05D004323 ORTHO05D005140 6.1e-79 298.5 285 57.9
MD16G1030300 Malus domestica HOM05D004323 ORTHO05D005140 1.0e-78 297.7 288 58.0
Nitab4.5_0002456g0110 Nicotiana tabacum HOM05D004323 ORTHO05D005140 2.3e-78 296.6 271 59.0
TWI79G0055 Tripterygium wilfordii HOM05D004323 ORTHO05D005140 1.5e-77 293.9 281 58.7
ECA246G3962 Erigeron canadensis HOM05D004323 ORTHO05D005140 7.5e-77 291.6 289 57.1
Actinidia17651 Actinidia chinensis HOM05D004323 ORTHO05D005140 9.8e-77 291.2 280 59.3
ClCG07G004410 Citrullus lanatus HOM05D004323 ORTHO05D005140 1.7e-76 290.4 298 57.4
Cpa.g.sc116.11 Carica papaya HOM05D004323 ORTHO05D005140 3.7e-76 289.3 287 59.6
Cpa.g.sc65.119 Carica papaya HOM05D004323 ORTHO05D005140 8.3e-76 288.1 323 61.6
ATR0326G041 Amborella trichopoda HOM05D004323 ORTHO05D005140 4.1e-75 285.8 279 58.8
Sopen02g035890 Solanum pennellii HOM05D004323 ORTHO05D005140 5.4e-75 285.4 286 57.0
Ah.02g115750 Amaranthus hybridus HOM05D004323 ORTHO05D005140 1.2e-74 284.3 299 55.2
Eucgr.F02814 Eucalyptus grandis HOM05D004323 ORTHO05D005140 3.5e-74 282.7 286 56.6
Sabra04G0062000 Salix brachista HOM05D004323 ORTHO05D005140 4.6e-74 282.3 332 50.9
Hund14974 Selenicereus undatus HOM05D004323 ORTHO05D005140 1.7e-73 280.4 304 55.3
SalBow7G2861 Salvia bowleyana HOM05D004323 ORTHO05D005140 7.3e-72 275.0 274 59.1
PGR004G1785 Punica granatum HOM05D004323 ORTHO05D005140 2.1e-71 273.5 290 57.2
MD09G1260000 Malus domestica HOM05D004323 ORTHO05D005140 3.6e-71 272.7 296 55.4
EL10Ac5g11852 Beta vulgaris HOM05D004323 ORTHO05D005140 4.0e-70 269.2 303 52.5
unitig_748.g8745 Utricularia gibba HOM05D004323 ORTHO05D005140 8.9e-70 268.1 311 51.1
Peaxi162Scf00803g00424 Petunia axillaris HOM05D004323 ORTHO05D005140 4.4e-69 265.8 260 56.9
BraA07t31307Z Brassica rapa HOM05D004323 ORTHO05D005140 1.1e-67 261.2 288 55.6
C06p45200 Brassica napus HOM05D004323 ORTHO05D005140 1.4e-67 260.8 296 54.4
A07p37500 Brassica napus HOM05D004323 ORTHO05D005140 2.4e-67 260.0 288 55.2
AT1G71080 Arabidopsis thaliana HOM05D004323 ORTHO05D005140 5.4e-67 258.8 287 54.4
Sp5g26250 Schrenkiella parvula HOM05D004323 ORTHO05D005140 5.4e-67 258.8 283 55.1
BolC6t39576H Brassica oleracea HOM05D004323 ORTHO05D005140 1.2e-66 257.7 292 53.8
BcaB03g14869 Brassica carinata HOM05D004323 ORTHO05D005140 2.0e-66 256.9 295 53.9
Nn3g18066 Nelumbo nucifera HOM05D004323 ORTHO05D005140 2.0e-66 256.9 166 78.3
SGA_v2.0_scaffold174G39287 Striga asiatica HOM05D004323 ORTHO05D005140 3.5e-66 256.1 295 52.5
CDE08G1420 Ceratophyllum demersum HOM05D004323 ORTHO05D005140 4.6e-66 255.8 287 55.1
Oeu030805.1 Olea europaea HOM05D004323 ORTHO05D005140 3.9e-65 252.7 291 53.3
TWI75G0714 Tripterygium wilfordii HOM05D004323 ORTHO05D005140 2.5e-64 250.0 241 59.3
PGR119G1370 Punica granatum HOM05D004323 ORTHO05D005140 4.3e-64 249.2 327 55.0
Carub.0002s1789 Capsella rubella HOM05D004323 ORTHO05D005140 5.6e-64 248.8 292 51.7
BcaC08g46546 Brassica carinata HOM05D004323 ORTHO05D005140 2.1e-63 246.9 290 53.1
Gohir.A07G076100 Gossypium hirsutum HOM05D004323 ORTHO05D005140 2.1e-63 246.9 244 58.6
Thhalv10018840m.g Eutrema salsugineum HOM05D004323 ORTHO05D005140 6.2e-63 245.4 297 52.5
AL2G30660 Arabidopsis lyrata HOM05D004323 ORTHO05D005140 8.1e-63 245.0 286 52.4
CARHR064370 Cardamine hirsuta HOM05D004323 ORTHO05D005140 5.2e-62 242.3 289 53.3
SalBow1G3118 Salvia bowleyana HOM05D004323 ORTHO05D005140 2.0e-61 240.4 191 66.0
Gorai.001G085700 Gossypium raimondii HOM05D004323 ORTHO05D005140 5.8e-61 238.8 222 61.3
Aa31LG4G9980 Aethionema arabicum HOM05D004323 ORTHO05D005140 2.2e-60 236.9 288 52.4
Gohir.D07G080600 Gossypium hirsutum HOM05D004323 ORTHO05D005140 8.3e-60 235.0 222 60.8
THA.LOC104805595 Tarenaya hassleriana HOM05D004323 ORTHO05D005140 5.4e-59 232.3 296 52.4
Oeu041976.1 Olea europaea HOM05D004323 ORTHO05D005140 5.6e-56 222.2 160 71.2
SHI04771 Sapria himalayana HOM05D004323 ORTHO05D005140 1.2e-55 221.1 287 50.2
THA.LOC104810161 Tarenaya hassleriana HOM05D004323 ORTHO05D005140 1.2e-55 221.1 261 51.7
CSS0030424 Camellia sinensis var. sinensis HOM05D004323 ORTHO05D005140 3.6e-55 219.5 165 70.9
Sp7g04050 Schrenkiella parvula HOM05D004323 ORTHO05D005140 3.8e-52 209.5 288 45.5
PSO063G0228 Papaver somniferum HOM05D004323 ORTHO05D005140 1.6e-50 204.1 123 81.3
CARHR214700 Cardamine hirsuta HOM05D004323 ORTHO05D005140 4.6e-50 202.6 289 45.0
AT5G38050 Arabidopsis thaliana HOM05D004323 ORTHO05D005140 1.3e-49 201.1 291 45.7
Carub.0005s1233 Capsella rubella HOM05D004323 ORTHO05D005140 5.1e-49 199.1 285 48.1
CSS0049640 Camellia sinensis var. sinensis HOM05D004323 ORTHO05D005140 5.6e-48 195.7 164 64.6
unitig_32.g11885 Utricularia gibba HOM05D004323 ORTHO05D005140 6.2e-47 192.2 291 45.4
SEGI_02231 Sequoiadendron giganteum HOM05D004323 ORTHO05D005140 2.4e-46 190.3 182 58.2
AUR62030721 Chenopodium quinoa HOM05D004323 ORTHO05D005140 4.0e-46 189.5 172 59.9
Thhalv10027858m.g Eutrema salsugineum HOM05D004323 ORTHO05D005140 2.0e-45 187.2 283 43.5
AUR62036351 Chenopodium quinoa HOM05D004323 ORTHO05D005140 6.9e-38 162.2 236 46.2
AagrBONN_evm.TU.Sc2ySwM_344.4471 Anthoceros agrestis HOM05D004323 ORTHO05D005140 5.8e-37 159.1 129 61.2
Aa31LG9G17280 Aethionema arabicum HOM05D004323 ORTHO05D004022 1.3e-36 157.9 288 40.6
SMO268G0019 Selaginella moellendorffii HOM05D004323 ORTHO05D005140 2.9e-36 156.8 266 41.0
Mapoly0014s0191 Marchantia polymorpha HOM05D004323 ORTHO05D005140 1.2e-34 151.4 290 37.9
Pp3c21_20610 Physcomitrium patens HOM05D004323 ORTHO05D005140 1.0e-33 148.3 122 61.5
AagrBONN_evm.TU.Sc2ySwM_117.2431 Anthoceros agrestis HOM05D004323 ORTHO05D005140 1.8e-33 147.5 294 36.4
Pp3c18_1330 Physcomitrium patens HOM05D004323 ORTHO05D005140 3.0e-33 146.7 124 59.7
BcaB06g27162 Brassica carinata HOM05D004323 ORTHO05D005140 3.7e-31 139.8 275 38.2
Nn091s42875 Nelumbo nucifera HOM05D004323 ORTHO05D005140 3.8e-28 129.8 110 67.3
MELO3C018369.2 Cucumis melo HOM05D004323 ORTHO05D005140 8.4e-28 128.6 163 67.5
FvH4_7g01202 Fragaria vesca HOM05D004323 ORTHO05D005140 1.3e-25 121.3 75 77.3
Lsat_1_v5_gn_3_83040 Lactuca sativa HOM05D004323 ORTHO05D005140 8.7e-25 118.6 156 50.0
CBR_g81558 Chara braunii HOM05D004323 ORTHO05D005140 4.3e-24 116.3 127 45.7
CSS0012754 Camellia sinensis var. sinensis HOM05D004323 ORTHO05D005140 1.3e-23 114.8 135 52.6
BcaB05g24642 Brassica carinata HOM05D004323 ORTHO05D005140 2.4e-22 110.5 173 43.4
Duzib138G1259 Durio zibethinus HOM05D004323 ORTHO05D005140 3.1e-22 110.2 158 48.1
QL02p048579 Quercus lobata HOM05D004323 ORTHO05D005140 3.8e-20 103.2 113 50.4
Sed0022868 Sechium edule HOM05D004323 ORTHO05D005140 1.2e-13 81.6 57 77.2
AL7G52902 Arabidopsis lyrata HOM05D004323 ORTHO05D005140 1.5e-13 81.3 57 68.4
SEGI_05570 Sequoiadendron giganteum HOM05D004323 ORTHO05D005140 3.4e-13 80.1 106 49.1
FAN16G1718 Fragaria x ananassa HOM05D004323 ORTHO05D005140 4.6e-10 69.7 46 67.4


User provided reference genes

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