Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR622G1123 Trochodendron aralioides HOM05D000536 ORTHO05D001213 8.0e-33 143.3 78 100.0
Dinv18631 Davidia involucrata HOM05D000536 ORTHO05D001213 4.2e-26 120.9 77 81.8
Dinv26246 Davidia involucrata HOM05D000536 ORTHO05D001213 4.2e-26 120.9 77 81.8
Nn4g24286 Nelumbo nucifera HOM05D000536 ORTHO05D001213 4.7e-25 117.5 80 82.5
CSS0012992 Camellia sinensis var. sinensis HOM05D000536 ORTHO05D001213 1.8e-24 115.5 77 79.2
QL03p034564 Quercus lobata HOM05D000536 ORTHO05D001213 2.3e-24 115.2 74 82.4
QL03p034777 Quercus lobata HOM05D000536 ORTHO05D001213 2.3e-24 115.2 74 82.4
CiPaw.05G190800 Carya illinoinensis HOM05D000536 ORTHO05D001213 3.0e-24 114.8 77 79.2
Haze_10924 Corylus avellana HOM05D000536 ORTHO05D001213 3.0e-24 114.8 77 79.2
Gohir.A01G149200 Gossypium hirsutum HOM05D000536 ORTHO05D001213 4.0e-24 114.4 77 79.2
Thecc.02G289900 Theobroma cacao HOM05D000536 ORTHO05D001213 4.0e-24 114.4 77 80.5
Gohir.D01G141500 Gossypium hirsutum HOM05D000536 ORTHO05D001213 2.0e-23 112.1 77 77.9
Gorai.002G174400 Gossypium raimondii HOM05D000536 ORTHO05D001213 2.0e-23 112.1 77 77.9
RcHm_v2.0_Chr4g0443401 Rosa chinensis HOM05D000536 ORTHO05D001213 2.0e-23 112.1 77 77.9
Hma1.2p1_0346F.1_g131620 Hydrangea macrophylla HOM05D000536 ORTHO05D001213 2.6e-23 111.7 77 77.9
COL.COLO4_13083 Corchorus olitorius HOM05D000001 ORTHO05D000003 5.7e-23 110.5 77 76.6
Potri.010G108700 Populus trichocarpa HOM05D000536 ORTHO05D001213 7.5e-23 110.2 77 77.9
Aqoxy1G00380 Aquilegia oxysepala HOM05D000536 ORTHO05D001213 9.8e-23 109.8 77 76.6
EL10Ac6g14161 Beta vulgaris HOM05D000536 ORTHO05D001213 9.8e-23 109.8 78 78.2
Duzib268G1889 Durio zibethinus HOM05D000536 ORTHO05D001213 1.3e-22 109.4 77 75.3
FAN17G1849 Fragaria x ananassa HOM05D000536 ORTHO05D001213 2.2e-22 108.6 77 75.3
Cpa.g.sc2.224 Carica papaya HOM05D000536 ORTHO05D001213 3.7e-22 107.8 77 72.7
THA.LOC104822993 Tarenaya hassleriana HOM05D000536 ORTHO05D001213 3.7e-22 107.8 77 75.3
Ah.03g137390 Amaranthus hybridus HOM05D000536 ORTHO05D001213 4.9e-22 107.5 78 74.4
Ciclev10017915m.g Citrus clementina HOM05D000536 ORTHO05D001213 4.9e-22 107.5 74 77.0
Duzib251G0309 Durio zibethinus HOM05D000536 ORTHO05D001213 4.9e-22 107.5 77 74.0
Prupe.1G331200 Prunus persica HOM05D001584 ORTHO05D001472 4.9e-22 107.5 77 75.3
Atru.chr11.590 Acer truncatum HOM05D000536 ORTHO05D001213 8.3e-22 106.7 77 72.7
Nn3g18315 Nelumbo nucifera HOM05D000536 ORTHO05D001213 8.3e-22 106.7 80 72.5
Manes.15G132700 Manihot esculenta HOM05D000536 ORTHO05D001213 1.4e-21 105.9 77 75.3
Actinidia12381 Actinidia chinensis HOM05D000536 ORTHO05D001213 1.8e-21 105.5 78 75.6
vmacro10683 Vaccinium macrocarpon HOM05D000536 ORTHO05D001213 1.8e-21 105.5 78 74.4
vmacro22447 Vaccinium macrocarpon HOM05D000536 ORTHO05D001213 1.8e-21 105.5 78 74.4
Glyma.08G043300 Glycine max HOM05D000536 ORTHO05D001213 2.4e-21 105.1 81 75.3
Sabra08G0101600 Salix brachista HOM05D000536 ORTHO05D001213 2.4e-21 105.1 77 74.0
ClCG01G006420 Citrullus lanatus HOM05D000536 ORTHO05D001213 3.1e-21 104.8 77 76.6
MD13G1030400 Malus domestica HOM05D000536 ORTHO05D001213 3.1e-21 104.8 77 72.7
GSVIVG01011685001 Vitis vinifera HOM05D000536 ORTHO05D001213 4.1e-21 104.4 77 74.0
Eucgr.B02947 Eucalyptus grandis HOM05D000536 ORTHO05D001213 5.4e-21 104.0 75 74.7
Manes.17G081701 Manihot esculenta HOM05D000536 ORTHO05D001213 5.4e-21 104.0 74 77.0
Potri.008G133000 Populus trichocarpa HOM05D000536 ORTHO05D001213 5.4e-21 104.0 77 72.7
ATR0564G375 Amborella trichopoda HOM05D000536 ORTHO05D001213 9.1e-21 103.2 77 75.3
Glyma.05G235900 Glycine max HOM05D000536 ORTHO05D001213 1.2e-20 102.8 81 74.1
Hund24955 Selenicereus undatus HOM05D000536 ORTHO05D001213 1.2e-20 102.8 78 73.1
Sc04g0005270 Simmondsia chinensis HOM05D000536 ORTHO05D001213 1.2e-20 102.8 78 73.1
Phvul.002G319300 Phaseolus vulgaris HOM05D000536 ORTHO05D001213 1.6e-20 102.4 81 72.8
MSTRG.2143 Avicennia marina HOM05D000536 ORTHO05D001213 2.0e-20 102.1 78 71.8
CiPaw.06G049600 Carya illinoinensis HOM05D000536 ORTHO05D001213 2.0e-20 102.1 77 74.0
Cc11_g08070 Coffea canephora HOM05D000536 ORTHO05D001213 2.0e-20 102.1 78 73.1
AUR62039540 Chenopodium quinoa HOM05D000536 ORTHO05D001213 2.7e-20 101.7 78 67.9
MELO3C005289.2 Cucumis melo HOM05D000536 ORTHO05D001213 2.7e-20 101.7 77 75.3
CsaV3_5G028260 Cucumis sativus L. HOM05D000536 ORTHO05D001213 2.7e-20 101.7 77 75.3
Oeu018608.1 Olea europaea HOM05D000536 ORTHO05D001213 2.7e-20 101.7 78 73.1
VMungo0251G2456 Vigna mungo HOM05D000536 ORTHO05D001213 3.5e-20 101.3 79 74.7
Hund24940 Selenicereus undatus HOM05D000536 ORTHO05D001213 4.5e-20 100.9 78 70.5
FvH4_4g33881 Fragaria vesca HOM05D000536 ORTHO05D001213 5.9e-20 100.5 77 72.7
THA.LOC104809129 Tarenaya hassleriana HOM05D000536 ORTHO05D001213 1.3e-19 99.4 77 72.7
arahy.Tifrunner.gnm1.ann1.0Q9PJV Arachis hypogaea HOM05D000536 ORTHO05D001213 2.3e-19 98.6 81 74.1
arahy.Tifrunner.gnm1.ann1.5Q0AB6 Arachis hypogaea HOM05D000536 ORTHO05D001213 2.3e-19 98.6 81 74.1
DCAR_007320 Daucus carota HOM05D000536 ORTHO05D001213 2.9e-19 98.2 74 70.3
MBI13_g01847_MAGBIO Magnolia biondii HOM05D000536 ORTHO05D001213 2.9e-19 98.2 96 62.5
SalBow2G0934 Salvia bowleyana HOM05D001584 ORTHO05D001472 5.0e-19 97.4 79 72.2
Lj4g0013361 Lotus japonicus HOM05D000536 ORTHO05D001213 6.6e-19 97.1 81 70.4
MD16G1021100 Malus domestica HOM05D000536 ORTHO05D001213 8.6e-19 96.7 77 67.5
MSTRG.13613 Avicennia marina HOM05D000536 ORTHO05D001213 1.1e-18 96.3 79 69.6
TWI53G0834 Tripterygium wilfordii HOM05D000536 ORTHO05D001213 1.1e-18 96.3 77 68.8
CANSAT01G0368 Cannabis sativa HOM05D000536 ORTHO05D001213 2.5e-18 95.1 75 73.3
Cfa014993 Carpinus fangiana HOM05D000536 ORTHO05D001213 9.5e-18 93.2 61 80.3
CAN.G574.54 Capsicum annuum HOM05D000536 ORTHO05D001213 2.1e-17 92.0 78 66.7
Nitab4.5_0000238g0050 Nicotiana tabacum HOM05D000536 ORTHO05D001213 2.8e-17 91.7 82 67.1
PGSC0003DMG400032159 Solanum tuberosum HOM05D000536 ORTHO05D001213 3.6e-17 91.3 79 65.8
Aa31LG7G7260 Aethionema arabicum HOM05D000536 ORTHO05D001213 4.7e-17 90.9 75 64.0
CARHR023680 Cardamine hirsuta HOM05D000536 ORTHO05D001213 1.4e-16 89.4 77 63.6
Glyma.16G151800 Glycine max HOM05D000536 ORTHO05D001213 2.3e-16 88.6 79 64.6
Sp1g20690 Schrenkiella parvula HOM05D000536 ORTHO05D001213 3.0e-16 88.2 78 64.1
Sopen01g001470 Solanum pennellii HOM05D000536 ORTHO05D001213 3.0e-16 88.2 79 64.6
Carub.0001s2281 Capsella rubella HOM05D000536 ORTHO05D001213 4.0e-16 87.8 77 62.3
CDE06G2033 Ceratophyllum demersum HOM05D000536 ORTHO05D001213 4.0e-16 87.8 80 63.8
Thhalv10009103m.g Eutrema salsugineum HOM05D000536 ORTHO05D001213 5.2e-16 87.4 77 63.6
Lsat_1_v5_gn_4_12901 Lactuca sativa HOM05D000536 ORTHO05D001213 5.2e-16 87.4 81 59.3
PSO478G3635 Papaver somniferum HOM05D000536 ORTHO05D001213 5.2e-16 87.4 92 60.9
Solyc01g005460.4 Solanum lycopersicum HOM05D000536 ORTHO05D001213 5.2e-16 87.4 79 64.6
Oeu062650.1 Olea europaea HOM05D000536 ORTHO05D001213 6.8e-16 87.0 78 66.7
BcaB03g11929 Brassica carinata HOM05D000536 ORTHO05D001213 8.9e-16 86.7 78 64.1
Medtr8g104900 Medicago truncatula HOM05D000536 ORTHO05D001213 8.9e-16 86.7 81 63.0
AL1G37010 Arabidopsis lyrata HOM05D000120 ORTHO05D001213 1.5e-15 85.9 77 61.0
TPR.G32674 Trifolium pratense HOM05D000536 ORTHO05D001213 1.5e-15 85.9 78 66.7
Glyma.02G070300 Glycine max HOM05D000536 ORTHO05D001213 2.0e-15 85.5 82 65.9
Rhsim09G0092200 Rhododendron simsii HOM05D000536 ORTHO05D001213 2.6e-15 85.1 62 74.2
PSO017G1255 Papaver somniferum HOM05D000536 ORTHO05D001213 3.4e-15 84.7 93 59.1
AT1G23220 Arabidopsis thaliana HOM05D000536 ORTHO05D001213 4.4e-15 84.3 77 61.0
Sed0003228 Sechium edule HOM05D000536 ORTHO05D001213 4.4e-15 84.3 77 66.2
BcaC07g39190 Brassica carinata HOM05D000536 ORTHO05D001213 5.7e-15 84.0 78 61.5
BolC8t49819H Brassica oleracea HOM05D000536 ORTHO05D001213 5.7e-15 84.0 78 61.5
SGA_v2.0_scaffold139G35394 Striga asiatica HOM05D000536 ORTHO05D001213 5.7e-15 84.0 80 61.2
A08p28290 Brassica napus HOM05D000536 ORTHO05D001213 9.8e-15 83.2 78 61.5
C08p21800 Brassica napus HOM05D000536 ORTHO05D001213 9.8e-15 83.2 78 60.3
BraA08t34760Z Brassica rapa HOM05D000536 ORTHO05D001213 9.8e-15 83.2 78 60.3
BcaC06g35028 Brassica carinata HOM05D000536 ORTHO05D001213 1.7e-14 82.4 78 61.5
C07p20500 Brassica napus HOM05D000536 ORTHO05D001213 1.7e-14 82.4 78 61.5
BolC7t42576H Brassica oleracea HOM05D000536 ORTHO05D001213 1.7e-14 82.4 78 61.5
CDE07G1071 Ceratophyllum demersum HOM05D000536 ORTHO05D001213 1.7e-14 82.4 80 57.5
A07p13950 Brassica napus HOM05D000536 ORTHO05D001213 3.7e-14 81.3 78 60.3
BraA07t29151Z Brassica rapa HOM05D000536 ORTHO05D001213 3.7e-14 81.3 78 60.3
BcaB03g14155 Brassica carinata HOM05D000536 ORTHO05D001213 6.3e-14 80.5 78 60.3
Lalb_Chr16g0387761 Lupinus albus HOM05D000536 ORTHO05D001213 1.4e-13 79.3 78 65.4
C05p22450 Brassica napus HOM05D000536 ORTHO05D001213 1.8e-13 79.0 78 57.7
HanXRQChr12g0377771 Helianthus annuus HOM05D000536 ORTHO05D001213 1.8e-13 79.0 79 54.4
A09p41540 Brassica napus HOM05D000536 ORTHO05D001213 3.2e-13 78.2 78 57.7
BraA09t39645Z Brassica rapa HOM05D000536 ORTHO05D001213 3.2e-13 78.2 78 57.7
BcaC05g26232 Brassica carinata HOM05D000536 ORTHO05D001213 4.1e-13 77.8 78 57.7
BolC5t30943H Brassica oleracea HOM05D000536 ORTHO05D001213 4.1e-13 77.8 78 57.7
Lalb_Chr05g0222311 Lupinus albus HOM05D000536 ORTHO05D001213 7.0e-13 77.0 80 62.5
Phvul.004G077100 Phaseolus vulgaris HOM05D000536 ORTHO05D001213 7.0e-13 77.0 79 62.0
VMungo0464G1315 Vigna mungo HOM05D000536 ORTHO05D001213 1.2e-12 76.3 79 62.0
BcaB07g32313 Brassica carinata HOM05D000536 ORTHO05D001213 1.6e-12 75.9 78 56.4
Nitab4.5_0009944g0040 Nicotiana tabacum HOM05D000536 ORTHO05D001213 2.0e-12 75.5 84 59.5
Sp5g25880 Schrenkiella parvula HOM05D000536 ORTHO05D001213 4.6e-12 74.3 74 55.4
Lj2g0016195 Lotus japonicus HOM05D000536 ORTHO05D001213 1.7e-11 72.4 87 55.2
TPR.G36864 Trifolium pratense HOM05D000536 ORTHO05D001213 1.5e-10 69.3 94 51.1
HPP92_024822 Vanilla planifolia HOM05D000536 ORTHO05D001213 3.3e-10 68.2 101 46.5
HPP92_020323 Vanilla planifolia HOM05D000536 ORTHO05D001213 1.0e-08 63.2 106 49.1
HPP92_020329 Vanilla planifolia HOM05D000536 ORTHO05D001213 1.0e-08 63.2 106 49.1
Medtr1g031880 Medicago truncatula HOM05D000536 ORTHO05D001213 2.3e-08 62.0 95 48.4
HanXRQChr08g0212401 Helianthus annuus HOM05D000536 ORTHO05D001213 4.0e-08 61.2 91 45.1
Lj3P866T44 Lonicera japonica HOM05D000536 ORTHO05D001213 1.5e-07 59.3 36 83.3
Hma1.2p1_0003F.1_g003600 Hydrangea macrophylla HOM05D000536 ORTHO05D001213 3.4e-07 58.2 35 80.0
SEGI_07176 Sequoiadendron giganteum HOM05D000536 ORTHO05D001213 1.7e-06 55.8 55 60.0
unitig_27.g25313 Utricularia gibba HOM05D000536 ORTHO05D001213 4.9e-06 54.3 92 44.6
Zm00001eb253710 Zea mays HOM05D000536 ORTHO05D001213 8.3e-06 53.5 45 66.7


User provided reference genes

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