Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR622G1020 Trochodendron aralioides HOM05D004985 ORTHO05D005912 4.1e-170 601.3 296 100.0
TAR374G0278 Trochodendron aralioides HOM05D004985 ORTHO05D005912 1.8e-109 399.8 296 70.3
GSVIVG01007867001 Vitis vinifera HOM05D004985 ORTHO05D005912 2.3e-104 382.9 301 67.8
Actinidia04825 Actinidia chinensis HOM05D004985 ORTHO05D004228 5.1e-104 381.7 304 66.8
CSS0016421 Camellia sinensis var. sinensis HOM05D004985 ORTHO05D005912 6.6e-104 381.3 302 66.9
CSS0040501 Camellia sinensis var. sinensis HOM05D004985 ORTHO05D005912 6.6e-104 381.3 302 66.9
Hma1.2p1_0060F.1_g033100 Hydrangea macrophylla HOM05D004985 ORTHO05D005912 1.5e-103 380.2 303 66.0
COL.COLO4_06857 Corchorus olitorius HOM05D004985 ORTHO05D005912 1.2e-102 377.1 300 66.0
Manes.14G085700 Manihot esculenta HOM05D004985 ORTHO05D005912 6.2e-102 374.8 302 66.2
Atru.chr9.579 Acer truncatum HOM05D004985 ORTHO05D005912 1.1e-101 374.0 302 66.6
Gohir.A07G068600 Gossypium hirsutum HOM05D004985 ORTHO05D005912 1.4e-101 373.6 303 67.7
Prupe.5G205100 Prunus persica HOM05D004985 ORTHO05D005912 1.4e-101 373.6 302 65.2
Gorai.001G077300 Gossypium raimondii HOM05D004985 ORTHO05D005912 5.2e-101 371.7 301 66.4
Eucgr.K02531 Eucalyptus grandis HOM05D004985 ORTHO05D005912 6.8e-101 371.3 296 67.9
Gohir.D07G073100 Gossypium hirsutum HOM05D004985 ORTHO05D005912 1.2e-100 370.5 301 66.1
QL10p019503 Quercus lobata HOM05D004985 ORTHO05D005912 1.2e-100 370.5 301 65.4
Thecc.03G101800 Theobroma cacao HOM05D004985 ORTHO05D005912 1.5e-100 370.2 300 65.7
Duzib205G0214 Durio zibethinus HOM05D004985 ORTHO05D005912 2.6e-100 369.4 300 66.0
Dinv22782 Davidia involucrata HOM05D004985 ORTHO05D005912 3.4e-100 369.0 290 68.6
CiPaw.11G053300 Carya illinoinensis HOM05D004985 ORTHO05D005912 9.9e-100 367.5 303 65.7
vmacro17610 Vaccinium macrocarpon HOM05D004985 ORTHO05D005912 9.9e-100 367.5 302 65.6
Cc09_g09310 Coffea canephora HOM05D004985 ORTHO05D005912 1.3e-99 367.1 302 64.6
MBI19_g00634_MAGBIO Magnolia biondii HOM05D004985 ORTHO05D005912 1.3e-99 367.1 303 66.3
Ciclev10021430m.g Citrus clementina HOM05D004985 ORTHO05D005912 3.8e-99 365.5 296 64.9
Cpa.g.sc94.56 Carica papaya HOM05D004985 ORTHO05D005912 6.4e-99 364.8 299 66.2
Potri.012G066200 Populus trichocarpa HOM05D004985 ORTHO05D005912 1.9e-98 363.2 300 66.0
arahy.Tifrunner.gnm1.ann1.B21894 Arachis hypogaea HOM05D004985 ORTHO05D005912 3.2e-98 362.5 203 87.7
arahy.Tifrunner.gnm1.ann1.XT1KNI Arachis hypogaea HOM05D004985 ORTHO05D005912 4.1e-98 362.1 203 87.2
Aqoxy3G03694 Aquilegia oxysepala HOM05D004985 ORTHO05D005912 7.1e-98 361.3 305 66.6
Oeu014411.1 Olea europaea HOM05D004985 ORTHO05D005912 9.2e-98 360.9 305 63.6
CSS0005049 Camellia sinensis var. sinensis HOM05D003672 ORTHO05D005912 1.2e-97 360.5 313 62.9
TWI79G1560 Tripterygium wilfordii HOM05D004985 ORTHO05D005912 1.3e-96 357.1 203 84.7
PGR044G1445 Punica granatum HOM05D004985 ORTHO05D005912 2.5e-95 352.8 296 63.2
TWI31G1299 Tripterygium wilfordii HOM05D004985 ORTHO05D005912 2.5e-95 352.8 302 63.6
RcHm_v2.0_Chr7g0183091 Rosa chinensis HOM05D004985 ORTHO05D005912 3.3e-95 352.4 303 63.0
CANSAT35G1156 Cannabis sativa HOM05D004985 ORTHO05D005912 1.6e-94 350.1 303 63.0
THA.LOC104812106 Tarenaya hassleriana HOM05D004985 ORTHO05D005912 2.1e-94 349.7 203 84.7
Oeu042721.3 Olea europaea HOM05D004985 ORTHO05D005912 6.2e-94 348.2 303 64.0
MSTRG.9599 Avicennia marina HOM05D004985 ORTHO05D005912 1.1e-93 347.4 304 63.5
FAN13G1687 Fragaria x ananassa HOM05D004985 ORTHO05D005912 1.8e-93 346.7 303 61.4
MD06G1202500 Malus domestica HOM05D004985 ORTHO05D005912 1.8e-93 346.7 203 83.7
PSO478G5014 Papaver somniferum HOM05D004985 ORTHO05D005912 1.8e-93 346.7 312 62.2
FvH4_5g13840 Fragaria vesca HOM05D004985 ORTHO05D005912 2.4e-93 346.3 305 61.6
PSO017G5703 Papaver somniferum HOM05D004985 ORTHO05D005912 2.4e-93 346.3 203 82.3
Sed0020095 Sechium edule HOM05D004985 ORTHO05D005912 2.4e-93 346.3 296 61.1
TPR.G12221 Trifolium pratense HOM05D004985 ORTHO05D005912 3.1e-93 345.9 201 84.1
Psat5g208200 Pisum sativum HOM05D004985 ORTHO05D005912 4.0e-93 345.5 201 84.1
AL1G31080 Arabidopsis lyrata HOM05D004985 ORTHO05D005912 5.2e-93 345.1 203 82.3
Sabra12G0048600 Salix brachista HOM05D004985 ORTHO05D005912 6.9e-93 344.7 324 59.6
Glyma.04G162700 Glycine max HOM05D004985 ORTHO05D005912 8.9e-93 344.4 201 83.1
Glyma.06G203300 Glycine max HOM05D004985 ORTHO05D005912 8.9e-93 344.4 201 83.1
Lalb_Chr12g0197201 Lupinus albus HOM05D004985 ORTHO05D005912 1.2e-92 344.0 201 82.6
Ca_14341_v3 Cicer arietinum L. HOM05D004985 ORTHO05D005912 2.0e-92 343.2 201 83.1
DCAR_029981 Daucus carota HOM05D004985 ORTHO05D005912 2.0e-92 343.2 203 82.3
CsaV3_1G002920 Cucumis sativus L. HOM05D004985 ORTHO05D005912 2.6e-92 342.8 297 63.0
MD14G1211600 Malus domestica HOM05D004985 ORTHO05D005912 2.6e-92 342.8 203 82.3
AT1G18640 Arabidopsis thaliana HOM05D004985 ORTHO05D005912 3.4e-92 342.4 203 81.3
Medtr3g025840 Medicago truncatula HOM05D004985 ORTHO05D005912 5.8e-92 341.7 201 82.1
Carub.0001s1827 Capsella rubella HOM05D004985 ORTHO05D005912 7.6e-92 341.3 203 81.3
Carub.0007s3048 Capsella rubella HOM05D004985 ORTHO05D005912 9.9e-92 340.9 203 80.3
Lj1g0020192 Lotus japonicus HOM05D004985 ORTHO05D005912 1.3e-91 340.5 201 82.6
Manes.06G084800 Manihot esculenta HOM05D004985 ORTHO05D005912 2.2e-91 339.7 201 82.6
CARHR019270 Cardamine hirsuta HOM05D004985 ORTHO05D005912 2.9e-91 339.3 202 81.2
Migut.D01657 Erythranthe guttata HOM05D004985 ORTHO05D005912 2.9e-91 339.3 301 61.8
Lsat_1_v5_gn_2_122560 Lactuca sativa HOM05D004985 ORTHO05D005912 3.8e-91 339.0 303 60.7
Sed0001113 Sechium edule HOM05D004985 ORTHO05D005912 3.8e-91 339.0 296 60.1
Hund02586 Selenicereus undatus HOM05D004985 ORTHO05D005912 3.8e-91 339.0 303 60.7
MSTRG.15338 Avicennia marina HOM05D004985 ORTHO05D005912 4.9e-91 338.6 203 80.8
BcaC05g25759 Brassica carinata HOM05D004985 ORTHO05D005912 6.4e-91 338.2 203 79.8
C05p16910 Brassica napus HOM05D004985 ORTHO05D005912 6.4e-91 338.2 203 79.8
BolC5t30393H Brassica oleracea HOM05D004985 ORTHO05D005912 6.4e-91 338.2 203 79.8
PGSC0003DMG400030337 Solanum tuberosum HOM05D004985 ORTHO05D005912 6.4e-91 338.2 295 61.0
A06p14760 Brassica napus HOM05D004985 ORTHO05D005912 1.1e-90 337.4 203 79.3
Phvul.010G007300 Phaseolus vulgaris HOM05D004985 ORTHO05D005912 1.1e-90 337.4 201 82.1
BraA06t24599Z Brassica rapa HOM05D004985 ORTHO05D005912 1.4e-90 337.0 203 78.8
ClCG06G015640 Citrullus lanatus HOM05D004985 ORTHO05D005912 1.4e-90 337.0 312 60.3
Thhalv10008334m.g Eutrema salsugineum HOM05D004985 ORTHO05D005912 1.4e-90 337.0 203 80.3
TPR.G28540 Trifolium pratense HOM05D004985 ORTHO05D005912 2.4e-90 336.3 201 80.6
BcaB07g31884 Brassica carinata HOM05D004985 ORTHO05D005912 4.2e-90 335.5 203 79.3
Sp1g16610 Schrenkiella parvula HOM05D004985 ORTHO05D005912 4.2e-90 335.5 203 79.8
AUR62021560 Chenopodium quinoa HOM05D004985 ORTHO05D005912 1.6e-89 333.6 203 79.8
BraA08t34961Z Brassica rapa HOM05D004985 ORTHO05D005912 2.1e-89 333.2 203 78.8
Solyc06g076510.3 Solanum lycopersicum HOM05D004985 ORTHO05D005912 2.7e-89 332.8 301 60.8
Sopen06g032910 Solanum pennellii HOM05D004985 ORTHO05D005912 4.6e-89 332.0 301 60.5
CAN.G394.86 Capsicum annuum HOM05D004985 ORTHO05D005912 6.0e-89 331.6 201 79.1
MELO3C017224.2 Cucumis melo HOM05D004985 ORTHO05D005912 6.0e-89 331.6 333 56.2
Haze_18480 Corylus avellana HOM05D004985 ORTHO05D005912 1.7e-88 330.1 279 64.2
VMungo0331G0044 Vigna mungo HOM05D004985 ORTHO05D005912 2.3e-88 329.7 201 80.1
EL10Ac8g18666 Beta vulgaris HOM05D004985 ORTHO05D005912 3.9e-88 328.9 203 77.8
AUR62008533 Chenopodium quinoa HOM05D004985 ORTHO05D005912 5.1e-88 328.6 203 78.8
Aa31LG7G3400 Aethionema arabicum HOM05D004985 ORTHO05D005912 1.1e-87 327.4 238 71.0
A08p30280 Brassica napus HOM05D004985 ORTHO05D005912 1.5e-87 327.0 200 78.0
Nitab4.5_0000116g0440 Nicotiana tabacum HOM05D004985 ORTHO05D005912 1.5e-87 327.0 299 59.9
SalBow4G0956 Salvia bowleyana HOM05D004985 ORTHO05D005912 1.5e-87 327.0 303 61.4
Peaxi162Scf00481g00631 Petunia axillaris HOM05D004985 ORTHO05D005912 4.3e-87 325.5 300 60.0
AUR62008530 Chenopodium quinoa HOM05D004985 ORTHO05D005912 7.3e-87 324.7 200 79.0
Os11g0629500 Oryza sativa ssp. japonica HOM05D004985 ORTHO05D005912 1.3e-86 323.9 201 78.1
HanXRQChr09g0270221 Helianthus annuus HOM05D004985 ORTHO05D005912 2.1e-86 323.2 203 76.8
Rhsim08G0146000 Rhododendron simsii HOM05D004985 ORTHO05D005912 2.1e-86 323.2 372 51.6
Os12g0502400 Oryza sativa ssp. japonica HOM05D004985 ORTHO05D005912 2.8e-86 322.8 201 76.6
unitig_60.g25411 Utricularia gibba HOM05D004985 ORTHO05D005912 2.8e-86 322.8 203 75.4
ECA232G4926 Erigeron canadensis HOM05D004985 ORTHO05D005912 6.2e-86 321.6 203 76.4
ATR0681G325 Amborella trichopoda HOM05D004985 ORTHO05D005912 9.0e-85 317.8 202 75.7
SGA_v2.0_scaffold42G16037 Striga asiatica HOM05D004985 ORTHO05D005912 9.0e-85 317.8 203 76.4
Lj1g0027941 Lotus japonicus HOM05D004985 ORTHO05D005912 1.2e-84 317.4 201 79.6
FAN08G1159 Fragaria x ananassa HOM05D004985 ORTHO05D005912 1.5e-84 317.0 298 59.1
FAN18G1860 Fragaria x ananassa HOM05D004985 ORTHO05D005912 9.9e-84 314.3 305 57.7
Zm00001eb166440 Zea mays HOM05D004985 ORTHO05D005912 9.9e-84 314.3 201 74.1
Nitab4.5_0004739g0030 Nicotiana tabacum HOM05D004985 ORTHO05D005912 1.3e-83 313.9 289 59.2
Nn4g23424 Nelumbo nucifera HOM05D004985 ORTHO05D005912 1.1e-82 310.8 287 61.7
Nn3g17450 Nelumbo nucifera HOM05D004985 ORTHO05D005912 7.9e-81 304.7 261 65.9
C08p18810 Brassica napus HOM05D004985 ORTHO05D005912 2.5e-79 299.7 253 62.5
Duzib084G0347 Durio zibethinus HOM05D004985 ORTHO05D005912 1.5e-76 290.4 300 56.0
AagrBONN_evm.TU.Sc2ySwM_228.2773 Anthoceros agrestis HOM05D004985 ORTHO05D005912 7.6e-76 288.1 201 67.7
Pp3c8_16890 Physcomitrium patens HOM05D004985 ORTHO05D005912 1.9e-74 283.5 203 67.0
SMO137G0315 Selaginella moellendorffii HOM05D004985 ORTHO05D005912 1.0e-72 277.7 203 65.0
AagrBONN_evm.TU.Sc2ySwM_117.3039 Anthoceros agrestis HOM05D004985 ORTHO05D005912 2.8e-70 269.6 188 68.6
Cc11_g04830 Coffea canephora HOM05D004985 ORTHO05D005912 4.8e-70 268.9 207 67.6
BolC8t49507H Brassica oleracea HOM05D004985 ORTHO05D005912 1.4e-69 267.3 170 76.5
BcaC07g38933 Brassica carinata HOM05D004985 ORTHO05D005912 2.4e-69 266.5 167 77.2
CDE06G0240 Ceratophyllum demersum HOM05D004985 ORTHO05D005912 6.9e-69 265.0 163 79.1
Mapoly0023s0019 Marchantia polymorpha HOM05D004985 ORTHO05D005912 2.9e-67 259.6 201 63.7
Sc10g0009710 Simmondsia chinensis HOM05D004985 ORTHO05D005912 6.5e-67 258.5 161 78.3
Actinidia16126 Actinidia chinensis HOM05D003322 ORTHO05D005912 1.5e-60 237.3 288 49.0
Lj7A653T48 Lonicera japonica HOM05D004985 ORTHO05D005912 1.3e-59 234.2 142 80.3
PRCOL_00003809 Prasinoderma coloniale HOM05D004985 ORTHO05D005912 3.2e-58 229.6 210 56.2
SGA_v2.0_scaffold3G01460 Striga asiatica HOM05D004985 ORTHO05D005912 3.0e-56 223.0 142 75.4
CDE07G0155 Ceratophyllum demersum HOM05D004985 ORTHO05D005912 1.5e-55 220.7 203 53.7
MCO16G297 Micromonas commoda HOM05D004985 ORTHO05D005912 4.3e-55 219.2 202 53.5
Nitab4.5_0002968g0050 Nicotiana tabacum HOM05D004985 ORTHO05D005912 1.5e-52 210.7 133 74.4
Cre04.g217955 Chlamydomonas reinhardtii HOM05D004985 ORTHO05D005912 7.2e-50 201.8 200 49.0
Cre04.g217959 Chlamydomonas reinhardtii HOM05D004985 ORTHO05D005912 7.2e-50 201.8 200 49.0
Nitab4.5_0000744g0020 Nicotiana tabacum HOM05D004985 ORTHO05D005912 3.4e-44 183.0 428 33.9
EL10Ac1g02367 Beta vulgaris HOM05D004985 ORTHO05D005912 5.0e-43 179.1 165 57.6
Cre01.g053000 Chlamydomonas reinhardtii HOM05D004424 ORTHO05D005476 1.6e-41 174.1 210 43.3
Cre10.g421700 Chlamydomonas reinhardtii HOM05D004424 ORTHO05D005476 2.1e-41 173.7 210 43.8
HPP92_012182 Vanilla planifolia HOM05D004985 ORTHO05D005912 6.1e-41 172.2 112 75.0
Cre01.g053150 Chlamydomonas reinhardtii HOM05D004424 ORTHO05D005476 3.9e-40 169.5 210 42.4
Gohir.A07G164340 Gossypium hirsutum HOM05D004985 ORTHO05D005912 8.2e-38 161.8 99 79.8
Gohir.A06G085600 Gossypium hirsutum HOM05D004985 ORTHO05D005912 2.2e-35 153.7 97 78.4
HPP92_012184 Vanilla planifolia HOM05D004985 ORTHO05D005912 2.9e-35 153.3 93 78.5
CBR_g37694 Chara braunii HOM05D004985 ORTHO05D005912 4.4e-31 139.4 108 60.2
Haze_07724 Corylus avellana HOM05D004985 ORTHO05D005912 1.4e-29 134.4 161 50.9
SalBow5G1356 Salvia bowleyana HOM05D004985 ORTHO05D005912 1.1e-26 124.8 101 66.3
SGA_v2.0_scaffold1066G53824 Striga asiatica HOM05D004985 ORTHO05D005912 5.2e-24 115.9 61 90.2
Oeu014405.1 Olea europaea HOM05D004985 ORTHO05D005912 8.8e-24 115.2 91 64.8
Cfa004103 Carpinus fangiana HOM05D004985 ORTHO05D005912 1.8e-21 107.5 150 48.0
Haze_15308 Corylus avellana HOM05D004985 ORTHO05D005912 5.4e-21 105.9 67 73.1
SEGI_10948 Sequoiadendron giganteum HOM05D004985 ORTHO05D005912 2.3e-19 100.5 62 77.4
Peaxi162Scf00086g01110 Petunia axillaris HOM05D004985 ORTHO05D005912 2.9e-19 100.1 59 84.7


User provided reference genes

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