Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR622G0977 Trochodendron aralioides HOM05D005909 ORTHO05D007481 5.2e-142 507.7 251 100.0
TAR622G1259 Trochodendron aralioides HOM05D005909 ORTHO05D007481 3.5e-130 468.4 232 99.1
Nn4g23953 Nelumbo nucifera HOM05D005909 ORTHO05D007481 4.4e-117 424.9 234 88.5
MBI16_g44832_MAGBIO Magnolia biondii HOM05D005909 ORTHO05D007481 7.3e-112 407.5 233 86.3
Hma1.2p1_2306F.1_g319360 Hydrangea macrophylla HOM05D005909 ORTHO05D007481 3.4e-109 398.7 234 82.1
Hma1.2p1_1314F.1_g274990 Hydrangea macrophylla HOM05D005909 ORTHO05D007481 3.7e-108 395.2 234 81.6
Actinidia14921 Actinidia chinensis HOM05D005909 ORTHO05D007481 4.9e-108 394.8 234 83.3
CSS0033004 Camellia sinensis var. sinensis HOM05D005909 ORTHO05D007481 1.1e-107 393.7 234 82.9
RcHm_v2.0_Chr4g0434411 Rosa chinensis HOM05D005909 ORTHO05D007481 1.1e-107 393.7 232 81.9
PSO782G5715 Papaver somniferum HOM05D005909 ORTHO05D007481 2.1e-106 389.4 234 80.3
vmacro10599 Vaccinium macrocarpon HOM05D005909 ORTHO05D007481 2.7e-106 389.0 234 81.2
Cc11_g09670 Coffea canephora HOM05D005909 ORTHO05D007481 3.5e-106 388.7 232 78.9
Rhsim09G0103900 Rhododendron simsii HOM05D005909 ORTHO05D007481 3.5e-106 388.7 233 81.1
CiPaw.05G242600 Carya illinoinensis HOM05D005909 ORTHO05D007481 1.0e-105 387.1 230 81.7
CAN.G610.24 Capsicum annuum HOM05D005909 ORTHO05D007481 1.3e-105 386.7 231 77.9
Atru.chr11.237 Acer truncatum HOM05D005909 ORTHO05D007481 2.3e-105 386.0 234 80.8
Sabra10G0090400 Salix brachista HOM05D005909 ORTHO05D007481 3.0e-105 385.6 234 80.3
Potri.010G120200 Populus trichocarpa HOM05D005909 ORTHO05D007481 6.6e-105 384.4 233 80.3
Aqoxy3G04056 Aquilegia oxysepala HOM05D005909 ORTHO05D007481 8.6e-105 384.0 233 80.3
FAN17G2694 Fragaria x ananassa HOM05D005909 ORTHO05D007481 1.1e-104 383.6 245 77.6
Manes.06G064900 Manihot esculenta HOM05D005909 ORTHO05D007481 1.5e-104 383.3 234 79.9
Cfa015837 Carpinus fangiana HOM05D005909 ORTHO05D007481 2.5e-104 382.5 234 79.5
QL01p010815 Quercus lobata HOM05D005909 ORTHO05D007481 2.5e-104 382.5 233 79.4
QL93p0145_0024 Quercus lobata HOM05D005909 ORTHO05D007481 2.5e-104 382.5 233 79.4
Nitab4.5_0002112g0090 Nicotiana tabacum HOM05D005909 ORTHO05D007481 7.3e-104 380.9 231 75.8
FAN12G0127 Fragaria x ananassa HOM05D005909 ORTHO05D007481 9.6e-104 380.6 229 80.3
Prupe.1G316800 Prunus persica HOM05D005909 ORTHO05D007481 9.6e-104 380.6 229 79.9
FvH4_4g26720 Fragaria vesca HOM05D005909 ORTHO05D007481 1.2e-103 380.2 229 80.3
Solyc05g008870.3 Solanum lycopersicum HOM05D005909 ORTHO05D007481 1.6e-103 379.8 231 76.2
Sopen05g004630 Solanum pennellii HOM05D005909 ORTHO05D007481 1.6e-103 379.8 231 76.2
COL.COLO4_32148 Corchorus olitorius HOM05D005909 ORTHO05D007481 2.1e-103 379.4 231 77.5
FAN07G1481 Fragaria x ananassa HOM05D005909 ORTHO05D007481 2.1e-103 379.4 245 76.7
TPR.G4906 Trifolium pratense HOM05D005909 ORTHO05D007481 6.2e-103 377.9 232 77.2
Nitab4.5_0000694g0120 Nicotiana tabacum HOM05D005909 ORTHO05D007481 1.4e-102 376.7 231 76.2
GSVIVG01011843001 Vitis vinifera HOM05D005909 ORTHO05D007481 1.4e-102 376.7 248 76.6
Duzib248G1493 Durio zibethinus HOM05D005909 ORTHO05D007481 4.0e-102 375.2 231 77.5
Ciclev10015519m.g Citrus clementina HOM05D005909 ORTHO05D007481 6.8e-102 374.4 234 77.4
Phvul.007G032000 Phaseolus vulgaris HOM05D005909 ORTHO05D007481 6.8e-102 374.4 232 76.7
Gohir.A03G148900 Gossypium hirsutum HOM05D005909 ORTHO05D007481 8.9e-102 374.0 233 76.0
Gorai.005G193400 Gossypium raimondii HOM05D005909 ORTHO05D007481 8.9e-102 374.0 233 76.0
VMungo0720G1068 Vigna mungo HOM05D005909 ORTHO05D007481 8.9e-102 374.0 232 76.7
FAN22G0620 Fragaria x ananassa HOM05D005909 ORTHO05D007481 2.6e-101 372.5 229 78.6
HanXRQChr15g0477421 Helianthus annuus HOM05D005909 ORTHO05D007481 2.6e-101 372.5 234 76.9
Psat6g224680 Pisum sativum HOM05D005909 ORTHO05D007481 2.6e-101 372.5 232 76.3
MD16G1037200 Malus domestica HOM05D005909 ORTHO05D007481 4.4e-101 371.7 232 78.0
ECA246G0525 Erigeron canadensis HOM05D005909 ORTHO05D007481 5.8e-101 371.3 236 76.7
Glyma.20G120600 Glycine max HOM05D005909 ORTHO05D007481 5.8e-101 371.3 232 75.0
Gohir.D02G171900 Gossypium hirsutum HOM05D005909 ORTHO05D007481 5.8e-101 371.3 233 75.1
DCAR_007264 Daucus carota HOM05D005909 ORTHO05D007481 7.6e-101 370.9 241 75.5
Lj5g0016761 Lotus japonicus HOM05D005909 ORTHO05D007481 7.6e-101 370.9 232 77.2
TWI79G1572 Tripterygium wilfordii HOM05D005909 ORTHO05D007481 7.6e-101 370.9 231 78.8
arahy.Tifrunner.gnm1.ann1.W577BF Arachis hypogaea HOM05D005909 ORTHO05D007481 9.9e-101 370.5 232 75.4
Lalb_Chr21g0308731 Lupinus albus HOM05D005909 ORTHO05D007481 1.3e-100 370.2 232 77.2
Ca_06889_v3 Cicer arietinum L. HOM05D005909 ORTHO05D007481 2.2e-100 369.4 232 76.7
BcaC06g34207 Brassica carinata HOM05D005909 ORTHO05D007481 3.8e-100 368.6 232 76.3
C07p31670 Brassica napus HOM05D005909 ORTHO05D007481 3.8e-100 368.6 232 76.3
BolC7t43706H Brassica oleracea HOM05D005909 ORTHO05D007481 3.8e-100 368.6 232 76.3
Medtr1g109590 Medicago truncatula HOM05D005909 ORTHO05D007481 3.8e-100 368.6 230 75.7
CANSAT01G0643 Cannabis sativa HOM05D005909 ORTHO05D007481 4.9e-100 368.2 237 74.7
Lsat_1_v5_gn_3_62021 Lactuca sativa HOM05D005909 ORTHO05D007481 3.2e-99 365.5 231 76.6
arahy.Tifrunner.gnm1.ann1.IU6D7D Arachis hypogaea HOM05D005909 ORTHO05D007481 1.2e-98 363.6 235 73.6
FAN12G0185 Fragaria x ananassa HOM05D005909 ORTHO05D007481 1.6e-98 363.2 245 73.5
CARHR143760 Cardamine hirsuta HOM05D005909 ORTHO05D007481 2.1e-98 362.8 232 76.3
SalBow8G0352 Salvia bowleyana HOM05D005909 ORTHO05D007481 2.1e-98 362.8 231 74.9
SalBow8G3248 Salvia bowleyana HOM05D005909 ORTHO05D007481 2.1e-98 362.8 231 74.9
Sed0017467 Sechium edule HOM05D005909 ORTHO05D007481 2.7e-98 362.5 234 74.4
MSTRG.13555 Avicennia marina HOM05D005909 ORTHO05D007481 6.0e-98 361.3 231 75.3
Eucgr.G02238 Eucalyptus grandis HOM05D005909 ORTHO05D007481 7.8e-98 360.9 233 74.2
Lj6A753G52 Lonicera japonica HOM05D005909 ORTHO05D007481 1.7e-97 359.8 204 83.8
AT2G01220 Arabidopsis thaliana HOM05D005909 ORTHO05D007481 2.3e-97 359.4 232 76.3
Thhalv10000909m.g Eutrema salsugineum HOM05D005909 ORTHO05D007481 2.3e-97 359.4 232 75.4
A06p44550 Brassica napus HOM05D005909 ORTHO05D007481 3.9e-97 358.6 232 74.1
CsaV3_5G028790 Cucumis sativus L. HOM05D005909 ORTHO05D007481 3.9e-97 358.6 234 73.1
AL5G10170 Arabidopsis lyrata HOM05D005909 ORTHO05D007481 5.1e-97 358.2 232 75.4
PGR119G2457 Punica granatum HOM05D005909 ORTHO05D007481 8.7e-97 357.5 233 73.0
Sp2g12680 Schrenkiella parvula HOM05D005909 ORTHO05D007481 8.7e-97 357.5 231 74.5
MELO3C005340.2 Cucumis melo HOM05D005909 ORTHO05D007481 1.1e-96 357.1 234 72.6
unitig_699.g19483 Utricularia gibba HOM05D005909 ORTHO05D007481 2.5e-96 355.9 240 70.4
BraA06t27329Z Brassica rapa HOM05D005909 ORTHO05D007481 7.3e-96 354.4 237 73.0
THA.LOC104823950 Tarenaya hassleriana HOM05D005909 ORTHO05D007481 7.3e-96 354.4 231 74.0
Aa31LG2G8670 Aethionema arabicum HOM05D005909 ORTHO05D007481 1.6e-95 353.2 231 74.9
ATR0807G244 Amborella trichopoda HOM05D005909 ORTHO05D007481 3.6e-95 352.1 234 71.4
Carub.0005s0021 Capsella rubella HOM05D005909 ORTHO05D007481 4.8e-95 351.7 234 74.4
Ah.03g138370 Amaranthus hybridus HOM05D005909 ORTHO05D007481 6.9e-94 347.8 233 70.4
CDE08G1136 Ceratophyllum demersum HOM05D005909 ORTHO05D007481 6.9e-94 347.8 231 73.2
Sc14g0007280 Simmondsia chinensis HOM05D005909 ORTHO05D007481 9.0e-94 347.4 235 73.2
HPP92_024514 Vanilla planifolia HOM05D005909 ORTHO05D007481 1.2e-93 347.1 228 74.6
Dinv16136 Davidia involucrata HOM05D005909 ORTHO05D007481 7.6e-93 344.4 184 89.7
Hund20744 Selenicereus undatus HOM05D005909 ORTHO05D007481 9.9e-93 344.0 234 70.5
Migut.E00369 Erythranthe guttata HOM05D005909 ORTHO05D007481 3.8e-92 342.0 228 74.1
Zm00001eb360650 Zea mays HOM05D005909 ORTHO05D007481 4.9e-92 341.7 233 70.4
AUR62037268 Chenopodium quinoa HOM05D005909 ORTHO05D007481 8.4e-92 340.9 234 69.2
PSO063G1187 Papaver somniferum HOM05D005909 ORTHO05D007481 1.9e-91 339.7 197 83.2
AUR62002812 Chenopodium quinoa HOM05D005909 ORTHO05D007481 3.2e-91 339.0 234 69.2
EL10Ac6g14305 Beta vulgaris HOM05D005909 ORTHO05D007481 1.5e-88 330.1 229 66.4
Haze_00654 Corylus avellana HOM05D005909 ORTHO05D007481 4.3e-88 328.6 366 51.6
CARHR148990 Cardamine hirsuta HOM05D005909 ORTHO05D007481 1.3e-87 327.0 232 66.8
AL5G17030 Arabidopsis lyrata HOM05D005909 ORTHO05D007481 1.6e-87 326.6 233 67.8
Dinv31596 Davidia involucrata HOM05D005909 ORTHO05D007481 4.8e-87 325.1 234 71.8
Carub.0005s0605 Capsella rubella HOM05D005909 ORTHO05D007481 2.6e-85 319.3 240 67.1
AT3G27610 Arabidopsis thaliana HOM05D005909 ORTHO05D007481 4.9e-84 315.1 233 67.0
Cpa.g.sc65.66 Carica papaya HOM05D005909 ORTHO05D007481 4.2e-83 312.0 232 68.1
Peaxi162Scf00179g00534 Petunia axillaris HOM05D005909 ORTHO05D007481 3.9e-81 305.4 231 65.4
ClCG01G005900 Citrullus lanatus HOM05D005909 ORTHO05D007481 3.1e-78 295.8 234 64.5
Thecc.02G222000 Theobroma cacao HOM05D005909 ORTHO05D007481 1.1e-67 260.8 156 80.1
SGA_v2.0_scaffold14G06901 Striga asiatica HOM05D005909 ORTHO05D007481 1.0e-65 254.2 148 80.4
Oeu027686.1 Olea europaea HOM05D005909 ORTHO05D007481 1.6e-63 246.9 156 76.9
AagrBONN_evm.TU.Sc2ySwM_362.1435 Anthoceros agrestis HOM05D004406 ORTHO05D005660 3.7e-63 245.7 227 52.0
SMO196G0003 Selaginella moellendorffii HOM05D005909 ORTHO05D007481 8.2e-63 244.6 239 49.4
Mapoly0100s0051 Marchantia polymorpha HOM05D005909 ORTHO05D007481 4.5e-61 238.8 231 51.1
Pp3c3_16750 Physcomitrium patens HOM05D005909 ORTHO05D007481 3.2e-59 232.6 249 46.6
Pp3c12_7340 Physcomitrium patens HOM05D005909 ORTHO05D007481 3.6e-58 229.2 246 46.3
Actinidia16683 Actinidia chinensis HOM05D005909 ORTHO05D007481 1.7e-55 220.3 158 72.2
SEGI_29486 Sequoiadendron giganteum HOM05D005909 ORTHO05D007481 1.4e-38 164.1 107 69.2
Os01g0691500 Oryza sativa ssp. japonica HOM05D005909 ORTHO05D007481 9.1e-38 161.4 124 65.3
MCO06G004 Micromonas commoda HOM05D005909 ORTHO05D007481 1.0e-28 131.3 189 38.1
PRCOL_00006609 Prasinoderma coloniale HOM05D005909 ORTHO05D007481 5.0e-28 129.0 182 38.5
Cre06.g278116 Chlamydomonas reinhardtii HOM05D005909 ORTHO05D007481 4.2e-27 125.9 175 38.9
CiPaw.05G241800 Carya illinoinensis HOM05D005909 ORTHO05D007481 3.0e-25 119.8 66 86.4
SGA_v2.0_scaffold14G06904 Striga asiatica HOM05D005909 ORTHO05D007481 4.4e-24 115.9 83 68.7
CBR_g39317 Chara braunii HOM05D005909 ORTHO05D007481 1.7e-20 104.0 139 44.6
Carub.0005s0593 Capsella rubella HOM05D005909 ORTHO05D007481 7.0e-14 82.0 82 56.1
CBR_g39316 Chara braunii HOM05D000019 ORTHO05D000002 5.0e-12 75.9 70 52.9
SEGI_32432 Sequoiadendron giganteum HOM05D005909 ORTHO05D007481 6.6e-12 75.5 69 52.2
Gohir.D12G121400 Gossypium hirsutum HOM05D005909 ORTHO05D046826 2.1e-10 70.5 36 91.7
TPR.G28941 Trifolium pratense HOM05D000324 ORTHO05D004875 1.4e-09 67.8 51 60.8
SMO265G0018 Selaginella moellendorffii HOM05D005909 ORTHO05D007481 2.0e-08 63.9 82 41.5
Gorai.008G132300 Gossypium raimondii HOM05D005909 ORTHO05D046826 2.6e-08 63.5 36 83.3
SMO199G0001 Selaginella moellendorffii HOM05D006925 ORTHO05D008830 5.8e-08 62.4 86 40.7
SMO146G0235 Selaginella moellendorffii HOM05D020292 ORTHO05D030583 1.3e-07 61.2 82 40.2
SMO163G0092 Selaginella moellendorffii HOM05D005909 ORTHO05D007481 2.2e-07 60.5 81 40.7


User provided reference genes

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