Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR622G0947 Trochodendron aralioides HOM05D004112 ORTHO05D004739 0.0e+00 1222.2 626 100.0
Nn3g16670 Nelumbo nucifera HOM05D004112 ORTHO05D004739 5.1e-207 724.9 635 62.2
GSVIVG01000557001 Vitis vinifera HOM05D004112 ORTHO05D004739 2.3e-175 619.8 654 53.8
Dinv14739 Davidia involucrata HOM05D004112 ORTHO05D004739 1.9e-169 600.1 622 56.9
Thecc.02G263400 Theobroma cacao HOM05D004112 ORTHO05D004739 1.4e-167 594.0 646 53.6
Prupe.1G242900 Prunus persica HOM05D004112 ORTHO05D004739 2.0e-166 590.1 666 50.8
Dinv15208 Davidia involucrata HOM05D004112 ORTHO05D004739 7.0e-164 581.6 714 50.3
Aqoxy3G01258 Aquilegia oxysepala HOM05D004112 ORTHO05D004739 9.5e-161 571.2 674 50.7
TWI36G0458 Tripterygium wilfordii HOM05D004112 ORTHO05D004739 1.2e-160 570.9 700 50.0
QL03p056879 Quercus lobata HOM05D004112 ORTHO05D004739 1.2e-158 564.3 636 52.2
CiPaw.05G178200 Carya illinoinensis HOM05D004112 ORTHO05D004739 1.3e-154 550.8 630 52.4
CSS0011275 Camellia sinensis var. sinensis HOM05D004112 ORTHO05D004739 2.3e-154 550.1 596 51.0
Gohir.D01G152000 Gossypium hirsutum HOM05D004112 ORTHO05D004739 8.6e-154 548.1 638 51.3
CSS0023851 Camellia sinensis var. sinensis HOM05D004112 ORTHO05D004739 5.6e-153 545.4 665 50.2
Rhsim12G0039400 Rhododendron simsii HOM05D004112 ORTHO05D004739 5.6e-153 545.4 654 50.6
MD13G1102900 Malus domestica HOM05D004112 ORTHO05D004739 2.8e-152 543.1 662 48.2
Duzib268G0184 Durio zibethinus HOM05D004112 ORTHO05D004739 6.2e-152 542.0 641 51.3
Gohir.A01G158700 Gossypium hirsutum HOM05D004112 ORTHO05D004739 1.3e-149 534.3 639 51.0
Gorai.002G188300 Gossypium raimondii HOM05D004112 ORTHO05D004739 2.9e-149 533.1 672 49.0
MD16G1103100 Malus domestica HOM05D004112 ORTHO05D004739 1.4e-148 530.8 666 47.1
TWI18G0097 Tripterygium wilfordii HOM05D004112 ORTHO05D004739 4.6e-147 525.8 643 49.6
Potri.008G185100 Populus trichocarpa HOM05D004112 ORTHO05D004739 7.3e-145 518.5 678 47.2
vmacro01117 Vaccinium macrocarpon HOM05D004112 ORTHO05D004739 4.7e-144 515.8 575 51.5
Atru.chr11.2164 Acer truncatum HOM05D004112 ORTHO05D004739 5.8e-142 508.8 659 48.6
CiPaw.06G066400 Carya illinoinensis HOM05D004112 ORTHO05D004739 2.2e-141 506.9 643 48.5
Potri.010G048700 Populus trichocarpa HOM05D004112 ORTHO05D004739 1.1e-140 504.6 683 46.3
COL.COLO4_23486 Corchorus olitorius HOM05D004112 ORTHO05D004739 9.3e-140 501.5 640 49.8
Sabra10G0020400 Salix brachista HOM05D004112 ORTHO05D004739 5.1e-138 495.7 672 46.4
Manes.13G021500 Manihot esculenta HOM05D004112 ORTHO05D004739 1.9e-137 493.8 649 47.0
RcHm_v2.0_Chr4g0432751 Rosa chinensis HOM05D004112 ORTHO05D004739 2.1e-136 490.3 700 44.7
FAN07G2897 Fragaria x ananassa HOM05D004112 ORTHO05D004739 2.4e-135 486.9 685 43.8
Actinidia08126 Actinidia chinensis HOM05D004112 ORTHO05D004739 5.8e-134 482.3 651 47.3
FAN17G0775 Fragaria x ananassa HOM05D004112 ORTHO05D004739 9.9e-134 481.5 690 43.8
Actinidia37446 Actinidia chinensis HOM05D004112 ORTHO05D004739 2.7e-131 473.4 702 44.6
FvH4_4g25440 Fragaria vesca HOM05D004112 ORTHO05D004739 2.7e-131 473.4 688 43.3
FAN12G3846 Fragaria x ananassa HOM05D004112 ORTHO05D004739 2.7e-131 473.4 688 43.3
Ciclev10030867m.g Citrus clementina HOM05D004112 ORTHO05D004739 1.1e-127 461.5 704 43.2
PSO478G3171 Papaver somniferum HOM05D004112 ORTHO05D004739 1.1e-127 461.5 626 47.8
ClCG05G025880 Citrullus lanatus HOM05D004112 ORTHO05D004739 9.0e-127 458.4 650 45.8
Actinidia15108 Actinidia chinensis HOM05D004112 ORTHO05D004739 1.2e-126 458.0 711 43.0
CsaV3_5G030980 Cucumis sativus L. HOM05D004112 ORTHO05D004739 1.9e-124 450.7 643 45.6
vmacro16177 Vaccinium macrocarpon HOM05D004112 ORTHO05D004739 9.3e-124 448.4 631 43.6
arahy.Tifrunner.gnm1.ann1.B4WRN4 Arachis hypogaea HOM05D004112 ORTHO05D004739 6.0e-123 445.7 658 43.9
Eucgr.H02474 Eucalyptus grandis HOM05D004112 ORTHO05D004739 6.0e-123 445.7 657 43.1
FAN22G2105 Fragaria x ananassa HOM05D004112 ORTHO05D004739 7.9e-123 445.3 689 42.4
CANSAT01G3092 Cannabis sativa HOM05D004112 ORTHO05D004739 3.0e-122 443.4 693 43.6
Lj6g0012261 Lotus japonicus HOM05D004112 ORTHO05D004739 3.0e-122 443.4 687 43.2
arahy.Tifrunner.gnm1.ann1.5BR3PR Arachis hypogaea HOM05D004112 ORTHO05D004739 2.5e-121 440.3 681 42.9
Cc11_g15970 Coffea canephora HOM05D004112 ORTHO05D004739 6.2e-120 435.6 722 40.9
THA.LOC104805277 Tarenaya hassleriana HOM05D004112 ORTHO05D004739 1.4e-119 434.5 655 42.6
MELO3C011937.2 Cucumis melo HOM05D004112 ORTHO05D004739 1.8e-119 434.1 647 43.9
Phvul.001G255700 Phaseolus vulgaris HOM05D004112 ORTHO05D004739 4.0e-119 433.0 694 43.1
PGR119G0183 Punica granatum HOM05D004112 ORTHO05D004739 1.7e-117 427.6 712 41.3
VMungo1383G0113 Vigna mungo HOM05D004112 ORTHO05D004739 3.8e-117 426.4 652 44.9
Actinidia01360 Actinidia chinensis HOM05D004112 ORTHO05D004739 1.4e-116 424.5 669 43.5
Haze_12270 Corylus avellana HOM05D004112 ORTHO05D004739 4.2e-116 422.9 669 42.6
Lalb_Chr08g0230891 Lupinus albus HOM05D004112 ORTHO05D004739 2.7e-115 420.2 673 42.9
DCAR_007043 Daucus carota HOM05D004112 ORTHO05D004739 1.0e-114 418.3 658 41.6
Hund25400 Selenicereus undatus HOM05D004112 ORTHO05D004739 2.5e-113 413.7 652 41.4
Sed0023093 Sechium edule HOM05D004112 ORTHO05D004739 8.2e-112 408.7 663 41.6
Glyma.11G243800 Glycine max HOM05D004112 ORTHO05D004739 2.4e-111 407.1 654 40.8
ATR0122G036 Amborella trichopoda HOM05D004112 ORTHO05D004739 1.2e-110 404.8 655 43.4
TPR.G30525 Trifolium pratense HOM05D004112 ORTHO05D004739 4.5e-110 402.9 734 39.4
Cfa009235 Carpinus fangiana HOM05D004112 ORTHO05D004739 8.5e-109 398.7 636 40.9
Sc26g0001570 Simmondsia chinensis HOM05D004112 ORTHO05D004739 1.4e-108 397.9 588 43.9
Lalb_Chr23g0277631 Lupinus albus HOM05D004112 ORTHO05D004739 1.9e-108 397.5 707 39.5
EL10Ac6g13879 Beta vulgaris HOM05D004112 ORTHO05D004739 3.6e-107 393.3 707 38.5
Thhalv10007108m.g Eutrema salsugineum HOM05D004112 ORTHO05D004739 8.7e-106 388.7 650 40.3
Sp1g11580 Schrenkiella parvula HOM05D004112 ORTHO05D004739 3.3e-105 386.7 644 39.8
A06p08680 Brassica napus HOM05D000421 ORTHO05D004739 7.4e-105 385.6 642 38.9
BraA06t24065Z Brassica rapa HOM05D000421 ORTHO05D004739 2.2e-104 384.0 640 38.9
SGA_v2.0_scaffold476G52145 Striga asiatica HOM05D004112 ORTHO05D004739 8.2e-104 382.1 793 35.7
Carub.0001s1278 Capsella rubella HOM05D004112 ORTHO05D004739 3.1e-103 380.2 652 39.1
Medtr3g086550 Medicago truncatula HOM05D004112 ORTHO05D004739 4.1e-103 379.8 796 37.3
BcaC05g25092 Brassica carinata HOM05D004112 ORTHO05D004739 1.5e-102 377.9 654 39.6
Psat5g091840 Pisum sativum HOM05D004112 ORTHO05D004739 1.3e-101 374.8 674 39.8
AL1G24680 Arabidopsis lyrata HOM05D004112 ORTHO05D004739 5.0e-101 372.9 644 39.3
BolC5t29775H Brassica oleracea HOM05D000421 ORTHO05D004739 1.1e-100 371.7 646 39.6
C05p10290 Brassica napus HOM05D000421 ORTHO05D004739 1.4e-100 371.3 640 39.1
Rhsim12G0108400 Rhododendron simsii HOM05D004112 ORTHO05D004739 3.2e-100 370.2 623 37.2
Hund06041 Selenicereus undatus HOM05D004112 ORTHO05D004739 3.2e-100 370.2 757 37.1
Migut.K00616 Erythranthe guttata HOM05D004112 ORTHO05D004739 1.4e-98 364.8 797 34.9
ECA233G4780 Erigeron canadensis HOM05D000002 ORTHO05D000001 3.0e-98 363.6 657 40.8
HanXRQChr12g0371721 Helianthus annuus HOM05D004112 ORTHO05D004739 1.8e-95 354.4 655 38.8
Aa31LG1G1770 Aethionema arabicum HOM05D004112 ORTHO05D004739 2.4e-95 354.0 646 39.8
CARHR013360 Cardamine hirsuta HOM05D004112 ORTHO05D004739 5.3e-95 352.8 658 37.2
AUR62024236 Chenopodium quinoa HOM05D004112 ORTHO05D004739 2.6e-94 350.5 759 33.7
AT1G13030 Arabidopsis thaliana HOM05D004112 ORTHO05D004739 1.1e-92 345.1 643 38.3
Ca_25135_v3 Cicer arietinum L. HOM05D004112 ORTHO05D004739 1.4e-92 344.7 665 38.6
Manes.12G021100 Manihot esculenta HOM05D004112 ORTHO05D004739 2.1e-91 340.9 540 42.4
BolC8t52227H Brassica oleracea HOM05D004112 ORTHO05D004739 3.9e-90 336.7 662 36.1
BraA09t41696Z Brassica rapa HOM05D004112 ORTHO05D004739 3.9e-90 336.7 645 36.7
A09p63460 Brassica napus HOM05D004112 ORTHO05D004739 2.0e-89 334.3 670 35.7
DCAR_026503 Daucus carota HOM05D004112 ORTHO05D004739 2.6e-89 334.0 632 38.1
Ah.02g130260 Amaranthus hybridus HOM05D004112 ORTHO05D004739 1.4e-87 328.2 723 34.0
ECA246G3212 Erigeron canadensis HOM05D004112 ORTHO05D004739 9.1e-87 325.5 601 38.9
CDE09G0121 Ceratophyllum demersum HOM05D004112 ORTHO05D004739 5.9e-86 322.8 680 36.6
Solyc05g013740.3 Solanum lycopersicum HOM05D004112 ORTHO05D004739 5.0e-85 319.7 852 30.8
Sopen05g008660 Solanum pennellii HOM05D004112 ORTHO05D004739 6.5e-85 319.3 856 30.8
Glyma.18G013300 Glycine max HOM05D004112 ORTHO05D004739 3.2e-84 317.0 544 40.3
AUR62005505 Chenopodium quinoa HOM05D004112 ORTHO05D004739 5.5e-84 316.2 680 34.9
BcaB08g34232 Brassica carinata HOM05D004112 ORTHO05D004739 7.2e-84 315.8 647 35.5
Nitab4.5_0000524g0060 Nicotiana tabacum HOM05D004112 ORTHO05D004739 2.3e-82 310.8 813 31.4
Lsat_1_v5_gn_8_152820 Lactuca sativa HOM05D004112 ORTHO05D004739 6.7e-82 309.3 704 36.4
Nitab4.5_0001978g0040 Nicotiana tabacum HOM05D004112 ORTHO05D004739 4.4e-81 306.6 877 31.5
Oeu057548.1 Olea europaea HOM05D004112 ORTHO05D004739 1.3e-80 305.1 663 36.0
HanXRQChr11g0329171 Helianthus annuus HOM05D004112 ORTHO05D004739 6.3e-80 302.8 596 40.3
unitig_22.g6943 Utricularia gibba HOM05D004112 ORTHO05D004739 4.1e-79 300.1 758 33.2
Peaxi162Scf00128g00449 Petunia axillaris HOM05D004112 ORTHO05D004739 1.3e-77 295.0 744 33.7
ClCG08G017620 Citrullus lanatus HOM05D004112 ORTHO05D004739 2.5e-76 290.8 644 37.1
Lsat_1_v5_gn_3_30221 Lactuca sativa HOM05D004112 ORTHO05D004739 3.2e-76 290.4 618 37.9
SalBow2G2073 Salvia bowleyana HOM05D004112 ORTHO05D004739 8.0e-75 285.8 906 28.4
Zm00001eb421500 Zea mays HOM05D004112 ORTHO05D004739 8.3e-72 275.8 683 34.3
C08p46920 Brassica napus HOM05D004112 ORTHO05D004739 1.0e-69 268.9 551 35.4
Zm00001eb084730 Zea mays HOM05D004112 ORTHO05D004739 1.1e-68 265.4 695 32.8
HPP92_024299 Vanilla planifolia HOM05D004112 ORTHO05D004739 6.1e-67 259.6 813 30.8
CsaV3_2G025020 Cucumis sativus L. HOM05D004112 ORTHO05D004739 2.3e-66 257.7 628 34.7
Hma1.2p1_0079F.1_g041130 Hydrangea macrophylla HOM05D004112 ORTHO05D004739 1.0e-61 242.3 475 35.4
MELO3C010699.2 Cucumis melo HOM05D004112 ORTHO05D004739 3.8e-61 240.4 638 33.5
Sed0015104 Sechium edule HOM05D004112 ORTHO05D004739 3.3e-60 237.3 626 32.7
HanXRQChr17g0539921 Helianthus annuus HOM05D004112 ORTHO05D004739 9.5e-60 235.7 585 34.5
PGSC0003DMG400025149 Solanum tuberosum HOM05D004112 ORTHO05D004739 2.3e-53 214.5 634 31.9
Solyc02g067090.4 Solanum lycopersicum HOM05D004112 ORTHO05D004739 1.6e-51 208.4 630 31.4
Os12g0288600 Oryza sativa ssp. japonica HOM05D004112 ORTHO05D004739 2.6e-49 201.1 570 31.6
CAN.G979.7 Capsicum annuum HOM05D004112 ORTHO05D004739 4.4e-49 200.3 621 29.6
Hma1.2p1_0815F.1_g222700 Hydrangea macrophylla HOM05D004112 ORTHO05D004739 3.7e-48 197.2 173 62.4
Pp3c16_2520 Physcomitrium patens HOM05D004112 ORTHO05D004739 3.7e-48 197.2 725 27.7
Nitab4.5_0005916g0010 Nicotiana tabacum HOM05D002060 ORTHO05D002098 6.4e-48 196.4 315 46.0
Mapoly0010s0205 Marchantia polymorpha HOM05D004112 ORTHO05D004739 1.3e-45 188.7 701 29.5
Sopen02g016280 Solanum pennellii HOM05D004112 ORTHO05D004739 1.3e-45 188.7 314 42.0
C05p09990 Brassica napus HOM05D004112 ORTHO05D004739 1.1e-44 185.7 448 34.4
Peaxi162Scf00117g00212 Petunia axillaris HOM05D004112 ORTHO05D004739 4.3e-44 183.7 498 30.5
Nitab4.5_0000212g0200 Nicotiana tabacum HOM05D002060 ORTHO05D002098 1.2e-43 182.2 352 42.0
Lj2C1008T10 Lonicera japonica HOM05D004112 ORTHO05D004739 1.6e-43 181.8 355 37.7
Ah.03g133390 Amaranthus hybridus HOM05D004112 ORTHO05D004739 1.2e-41 175.6 670 28.4
CAN.G272.6 Capsicum annuum HOM05D004112 ORTHO05D004739 2.0e-41 174.9 215 45.6
SHI17819 Sapria himalayana HOM05D004112 ORTHO05D004739 3.5e-38 164.1 174 54.6
Oeu059775.2 Olea europaea HOM05D004112 ORTHO05D004739 1.7e-37 161.8 319 38.6
SEGI_13723 Sequoiadendron giganteum HOM05D004112 ORTHO05D004739 3.3e-36 157.5 282 39.4
Hma1.2p1_0815F.1_g222710 Hydrangea macrophylla HOM05D004112 ORTHO05D004739 4.3e-36 157.1 159 50.3
Sed0006330 Sechium edule HOM05D004112 ORTHO05D004739 3.8e-32 144.1 596 27.9
BcaC05g25410 Brassica carinata HOM05D004112 ORTHO05D004739 9.2e-31 139.4 360 33.1
BolC5t29741H Brassica oleracea HOM05D004112 ORTHO05D004739 3.3e-28 131.0 368 33.2
BolC5t29747H Brassica oleracea HOM05D004112 ORTHO05D027101 3.3e-28 131.0 368 33.2
HPP92_011297 Vanilla planifolia HOM05D004112 ORTHO05D004739 1.6e-27 128.6 545 27.5
HPP92_011276 Vanilla planifolia HOM05D004112 ORTHO05D004739 1.8e-26 125.2 510 28.0
Ah.08g219390 Amaranthus hybridus HOM05D004112 ORTHO05D004739 2.0e-25 121.7 179 41.9
Hma1.2p1_0900F.1_g234620 Hydrangea macrophylla HOM05D004112 ORTHO05D004739 9.9e-25 119.4 114 58.8
BcaC05g25061 Brassica carinata HOM05D004112 ORTHO05D027101 2.4e-23 114.8 364 32.7
Lsat_1_v5_gn_8_152740 Lactuca sativa HOM05D000214 ORTHO05D000131 3.2e-23 114.4 169 41.4
AagrBONN_evm.TU.Sc2ySwM_368.3384 Anthoceros agrestis HOM05D004112 ORTHO05D004739 3.0e-21 107.8 653 25.4
C05p12860 Brassica napus HOM05D000639 ORTHO05D032511 5.1e-21 107.1 357 30.8
Lj3P1060T39 Lonicera japonica HOM05D004112 ORTHO05D004739 5.1e-21 107.1 190 40.0
TAR374G1154 Trochodendron aralioides HOM05D004112 ORTHO05D004739 6.6e-21 106.7 87 66.7
CsaV3_2G034300 Cucumis sativus L. HOM05D004112 ORTHO05D004739 3.3e-20 104.4 183 39.9
CANSAT56G3164 Cannabis sativa HOM05D004112 ORTHO05D004739 4.8e-19 100.5 182 41.2
Os12g0288801 Oryza sativa ssp. japonica HOM05D004112 ORTHO05D004739 4.8e-19 100.5 84 57.1
Lj2C1008G14 Lonicera japonica HOM05D004112 ORTHO05D004739 1.1e-18 99.4 254 33.5
Hma1.2p1_0900F.1_g234630 Hydrangea macrophylla HOM05D004112 ORTHO05D004739 4.9e-16 90.5 65 67.7
Peaxi162Scf00067g00115 Petunia axillaris HOM05D004112 ORTHO05D004739 2.4e-15 88.2 117 45.3
Actinidia26737 Actinidia chinensis HOM05D004112 ORTHO05D004739 3.5e-14 84.3 186 39.8
PGR042G2157 Punica granatum HOM05D004112 ORTHO05D004739 7.9e-14 83.2 60 58.3
HPP92_015941 Vanilla planifolia HOM05D004112 ORTHO05D004739 1.0e-13 82.8 191 34.6
SHI17828 Sapria himalayana HOM05D004112 ORTHO05D004739 3.9e-13 80.9 113 39.8
Lj3A62T27 Lonicera japonica HOM05D004112 ORTHO05D004739 5.1e-13 80.5 100 48.0
Lsat_1_v5_gn_3_132580 Lactuca sativa HOM05D000186 ORTHO05D004739 1.1e-12 79.3 268 32.5
HPP92_015914 Vanilla planifolia HOM05D004112 ORTHO05D004739 4.3e-12 77.4 224 31.7
Pp3c26_4720 Physcomitrium patens HOM05D027689 ORTHO05D018028 7.4e-12 76.6 112 37.5
Sc02g0003070 Simmondsia chinensis HOM05D004112 ORTHO05D004739 1.3e-11 75.9 355 28.2
Pp3c4_25420 Physcomitrium patens HOM05D004112 ORTHO05D004739 4.8e-11 73.9 86 43.0
BcaC05g25060 Brassica carinata HOM05D021208 ORTHO05D027101 1.4e-10 72.4 79 48.1
Lj4A466T15 Lonicera japonica HOM05D004112 ORTHO05D004739 5.3e-10 70.5 107 43.0
BolC2t12020H Brassica oleracea HOM05D004112 ORTHO05D004739 8.4e-08 63.2 138 34.8
SHI17827 Sapria himalayana HOM05D004112 ORTHO05D004739 9.3e-07 59.7 67 43.3


User provided reference genes

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