Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR622G0915 Trochodendron aralioides HOM05D002504 ORTHO05D007555 2.0e-217 758.8 396 100.0
TAR374G0022 Trochodendron aralioides HOM05D002504 ORTHO05D007555 6.4e-179 630.9 394 84.0
Dinv19925 Davidia involucrata HOM05D002504 ORTHO05D007332 5.6e-151 538.1 394 69.5
Dinv09821 Davidia involucrata HOM05D002504 ORTHO05D007555 2.4e-149 532.7 394 69.3
Actinidia34980 Actinidia chinensis HOM05D002504 ORTHO05D007555 1.5e-148 530.0 394 67.8
CSS0049848 Camellia sinensis var. sinensis HOM05D002504 ORTHO05D007555 1.0e-144 517.3 394 66.5
CSS0041593 Camellia sinensis var. sinensis HOM05D002504 ORTHO05D007555 2.3e-144 516.2 394 66.2
Nn3g16999 Nelumbo nucifera HOM05D002504 ORTHO05D007555 9.7e-143 510.8 392 68.9
Actinidia19055 Actinidia chinensis HOM05D002504 ORTHO05D007555 9.4e-138 494.2 373 66.8
Manes.14G075600 Manihot esculenta HOM05D002504 ORTHO05D007555 3.3e-135 485.7 395 62.3
Rhsim12G0158700 Rhododendron simsii HOM05D002504 ORTHO05D007555 2.4e-133 479.6 394 62.2
Haze_07368 Corylus avellana HOM05D002504 ORTHO05D007555 3.4e-132 475.7 392 61.2
Ciclev10020527m.g Citrus clementina HOM05D002504 ORTHO05D007555 5.9e-132 474.9 386 63.2
Potri.015G064300 Populus trichocarpa HOM05D002504 ORTHO05D007555 1.7e-131 473.4 395 61.5
Sabra15G0090100 Salix brachista HOM05D002504 ORTHO05D007555 2.2e-131 473.0 395 61.3
QL10p015753 Quercus lobata HOM05D002504 ORTHO05D007555 3.6e-129 465.7 392 59.7
QL10p005074 Quercus lobata HOM05D002504 ORTHO05D007555 4.7e-129 465.3 392 59.7
Cpa.g.sc17.218 Carica papaya HOM05D002504 ORTHO05D007555 1.8e-128 463.4 389 59.9
Duzib068G0930 Durio zibethinus HOM05D002504 ORTHO05D007555 3.9e-128 462.2 390 60.8
Aqoxy3G03288 Aquilegia oxysepala HOM05D002504 ORTHO05D007555 8.8e-128 461.1 395 61.3
Cfa018981 Carpinus fangiana HOM05D002504 ORTHO05D007555 8.8e-128 461.1 392 59.9
RcHm_v2.0_Chr7g0180701 Rosa chinensis HOM05D002504 ORTHO05D007555 9.7e-127 457.6 392 58.7
TWI39G0444 Tripterygium wilfordii HOM05D002504 ORTHO05D007555 3.7e-126 455.7 395 57.7
TWI38G0829 Tripterygium wilfordii HOM05D002504 ORTHO05D007555 8.2e-126 454.5 395 57.0
Oeu022629.1 Olea europaea HOM05D002504 ORTHO05D007555 1.4e-125 453.8 395 58.7
Gohir.A11G029531 Gossypium hirsutum HOM05D002504 ORTHO05D007555 5.3e-125 451.8 391 59.3
Thecc.03G080700 Theobroma cacao HOM05D002504 ORTHO05D007555 7.0e-125 451.4 390 60.8
COL.COLO4_05456 Corchorus olitorius HOM05D002504 ORTHO05D007555 9.1e-125 451.1 390 59.0
Gohir.D11G032900 Gossypium hirsutum HOM05D002504 ORTHO05D007555 1.2e-124 450.7 391 59.3
FAN08G0998 Fragaria x ananassa HOM05D002504 ORTHO05D007555 1.5e-124 450.3 393 57.8
FvH4_5g15370 Fragaria vesca HOM05D002504 ORTHO05D007555 7.7e-124 448.0 393 57.5
CiPaw.11G039400 Carya illinoinensis HOM05D002504 ORTHO05D007555 1.7e-123 446.8 378 60.1
Gorai.007G035700 Gossypium raimondii HOM05D002504 ORTHO05D007555 1.7e-123 446.8 391 58.8
FAN04G1481 Fragaria x ananassa HOM05D002504 ORTHO05D007555 3.8e-123 445.7 393 57.3
FAN13G2799 Fragaria x ananassa HOM05D002504 ORTHO05D007555 8.5e-123 444.5 393 57.0
Cc04_g15430 Coffea canephora HOM05D002504 ORTHO05D007555 7.2e-122 441.4 394 55.6
THA.LOC104808328 Tarenaya hassleriana HOM05D002504 ORTHO05D007555 1.2e-121 440.7 389 56.8
Sed0014360 Sechium edule HOM05D002504 ORTHO05D007555 2.1e-121 439.9 393 57.3
ClCG01G016490 Citrullus lanatus HOM05D002504 ORTHO05D007555 2.7e-121 439.5 392 56.9
Prupe.5G187600 Prunus persica HOM05D002504 ORTHO05D007555 2.7e-121 439.5 392 57.4
FAN18G2091 Fragaria x ananassa HOM05D002504 ORTHO05D007555 3.6e-121 439.1 393 56.7
Atru.BG.192.p Acer truncatum HOM05D002504 ORTHO05D007555 1.0e-120 437.6 352 63.4
Lj4g0008726 Lotus japonicus HOM05D002504 ORTHO05D007555 2.6e-119 433.0 394 55.3
MELO3C007518.2 Cucumis melo HOM05D002504 ORTHO05D007555 7.4e-119 431.4 392 56.1
TPR.G5442 Trifolium pratense HOM05D002504 ORTHO05D007555 1.3e-118 430.6 393 55.2
PSO832G2768 Papaver somniferum HOM05D002504 ORTHO05D007555 1.7e-118 430.3 396 57.3
MBI03_g18947_MAGBIO Magnolia biondii HOM05D002504 ORTHO05D007555 8.2e-118 427.9 392 57.7
CsaV3_6G042770 Cucumis sativus L. HOM05D002504 ORTHO05D007555 4.1e-117 425.6 389 55.8
PSO591G0510 Papaver somniferum HOM05D002504 ORTHO05D007555 7.0e-117 424.9 396 57.3
Lalb_Chr12g0196751 Lupinus albus HOM05D002504 ORTHO05D007555 2.2e-115 419.9 395 53.4
Glyma.17G097600 Glycine max HOM05D002504 ORTHO05D007555 3.2e-114 416.0 395 53.9
arahy.Tifrunner.gnm1.ann1.XHUI7I Arachis hypogaea HOM05D002504 ORTHO05D007555 4.2e-114 415.6 394 51.8
TPR.G1695 Trifolium pratense HOM05D002504 ORTHO05D007555 4.2e-114 415.6 393 53.7
Lsat_1_v5_gn_1_10961 Lactuca sativa HOM05D002504 ORTHO05D007555 1.2e-113 414.1 402 55.0
AT1G18850 Arabidopsis thaliana HOM05D002504 ORTHO05D007555 3.6e-113 412.5 394 55.1
arahy.Tifrunner.gnm1.ann1.AAW7H5 Arachis hypogaea HOM05D002504 ORTHO05D007555 4.7e-113 412.1 394 51.5
VMungo1215G2696 Vigna mungo HOM05D002504 ORTHO05D007555 6.1e-113 411.8 393 51.4
arahy.Tifrunner.gnm1.ann1.WQI89G Arachis hypogaea HOM05D002504 ORTHO05D007555 8.0e-113 411.4 394 51.0
DCAR_001955 Daucus carota HOM05D002504 ORTHO05D007555 3.0e-112 409.5 394 55.6
Medtr3g078030 Medicago truncatula HOM05D002504 ORTHO05D007555 4.0e-112 409.1 392 52.8
CANSAT78G1429 Cannabis sativa HOM05D002504 ORTHO05D007555 6.7e-112 408.3 389 55.8
Thhalv10007868m.g Eutrema salsugineum HOM05D002504 ORTHO05D007555 1.2e-111 407.5 389 55.3
SalBow5G4081 Salvia bowleyana HOM05D002504 ORTHO05D007555 1.2e-111 407.5 392 53.8
arahy.Tifrunner.gnm1.ann1.A4B6B0 Arachis hypogaea HOM05D002504 ORTHO05D007555 2.0e-111 406.8 391 50.9
Ca_16191_v3 Cicer arietinum L. HOM05D002504 ORTHO05D007555 2.6e-111 406.4 395 51.6
MD14G1195800 Malus domestica HOM05D002504 ORTHO05D007555 3.3e-111 406.0 394 54.1
Sc10g0009970 Simmondsia chinensis HOM05D002504 ORTHO05D007555 4.4e-111 405.6 395 53.9
CARHR019500 Cardamine hirsuta HOM05D002504 ORTHO05D007555 5.7e-111 405.2 389 54.8
AL1G31390 Arabidopsis lyrata HOM05D002504 ORTHO05D007555 1.3e-110 404.1 394 54.1
Phvul.003G192200 Phaseolus vulgaris HOM05D002504 ORTHO05D007555 2.2e-110 403.3 389 51.7
A06p15070 Brassica napus HOM05D002504 ORTHO05D007555 1.1e-109 401.0 389 52.4
BraA06t24622Z Brassica rapa HOM05D002504 ORTHO05D007555 4.1e-109 399.1 389 51.7
HPP92_004873 Vanilla planifolia HOM05D002504 ORTHO05D007555 4.1e-109 399.1 395 54.7
Sopen06g027310 Solanum pennellii HOM05D002504 ORTHO05D007555 9.1e-109 397.9 393 50.6
PSO063G6525 Papaver somniferum HOM05D002504 ORTHO05D007555 1.6e-108 397.1 396 55.1
Psat5g114360 Pisum sativum HOM05D002504 ORTHO05D007555 1.6e-108 397.1 392 50.8
PGSC0003DMG400033071 Solanum tuberosum HOM05D002504 ORTHO05D007555 2.0e-108 396.7 393 51.7
SHI03355 Sapria himalayana HOM05D002504 ORTHO05D007555 3.5e-108 396.0 395 51.4
Solyc06g071010.4 Solanum lycopersicum HOM05D002504 ORTHO05D007555 4.5e-108 395.6 393 50.6
Carub.0001s1850 Capsella rubella HOM05D002504 ORTHO05D007555 7.7e-108 394.8 410 51.5
MBI11_g21312_MAGBIO Magnolia biondii HOM05D002504 ORTHO05D007555 1.3e-107 394.0 391 54.5
Peaxi162Scf00013g00007 Petunia axillaris HOM05D002504 ORTHO05D007555 1.7e-107 393.7 399 53.4
DCAR_001117 Daucus carota HOM05D002504 ORTHO05D007555 6.5e-107 391.7 394 54.1
Aa31LG7G3620 Aethionema arabicum HOM05D002504 ORTHO05D007555 1.5e-106 390.6 389 53.0
Eucgr.A00822 Eucalyptus grandis HOM05D002504 ORTHO05D007555 1.5e-106 390.6 388 52.3
Nitab4.5_0000269g0140 Nicotiana tabacum HOM05D002504 ORTHO05D007555 1.5e-106 390.6 393 50.9
Sp1g16830 Schrenkiella parvula HOM05D002504 ORTHO05D007555 3.2e-106 389.4 417 50.4
C05p17270 Brassica napus HOM05D002504 ORTHO05D007555 3.6e-105 386.0 416 48.8
BolC5t30427H Brassica oleracea HOM05D002504 ORTHO05D007555 3.6e-105 386.0 416 48.8
Glyma.05G029300 Glycine max HOM05D002504 ORTHO05D007555 2.3e-104 383.3 397 51.6
BcaC05g25787 Brassica carinata HOM05D002504 ORTHO05D007555 8.8e-104 381.3 416 48.1
MBI03_g28522_MAGBIO Magnolia biondii HOM05D002504 ORTHO05D007555 2.6e-103 379.8 391 52.9
MSTRG.4344 Avicennia marina HOM05D002504 ORTHO05D007555 3.4e-103 379.4 391 51.2
Nitab4.5_0007394g0010 Nicotiana tabacum HOM05D002504 ORTHO05D007555 3.4e-103 379.4 393 49.6
CAN.G628.37 Capsicum annuum HOM05D002504 ORTHO05D007555 4.4e-103 379.0 397 51.9
CDE07G0237 Ceratophyllum demersum HOM05D002504 ORTHO05D007555 7.5e-103 378.3 388 52.8
BcaB07g31903 Brassica carinata HOM05D002504 ORTHO05D007555 2.2e-102 376.7 418 49.8
EL10As5g23568 Beta vulgaris HOM05D002504 ORTHO05D007555 4.8e-102 375.6 399 51.9
Lj7P436T44 Lonicera japonica HOM05D002504 ORTHO05D007555 1.1e-101 374.4 310 63.9
GSVIVG01008049001 Vitis vinifera HOM05D002504 ORTHO05D007555 1.4e-101 374.0 308 62.3
PGR083G1477 Punica granatum HOM05D002504 ORTHO05D007555 5.4e-101 372.1 394 51.3
Nn5g27262 Nelumbo nucifera HOM05D002504 ORTHO05D007555 2.0e-100 370.2 272 70.6
AUR62042153 Chenopodium quinoa HOM05D002504 ORTHO05D007555 2.3e-99 366.7 402 49.8
AUR62038455 Chenopodium quinoa HOM05D002504 ORTHO05D007555 5.0e-99 365.5 402 49.8
Migut.I00134 Erythranthe guttata HOM05D002504 ORTHO05D007555 8.6e-99 364.8 399 49.1
HanXRQChr06g0178031 Helianthus annuus HOM05D002504 ORTHO05D007555 1.5e-98 364.0 390 50.5
Ah.02g112510 Amaranthus hybridus HOM05D002504 ORTHO05D007555 9.8e-95 351.3 400 48.5
unitig_52.g17495 Utricularia gibba HOM05D002504 ORTHO05D007555 3.1e-93 346.3 396 46.2
Lj5P114T15 Lonicera japonica HOM05D002504 ORTHO05D007555 4.0e-88 329.3 265 64.2
SGA_v2.0_scaffold56G20046 Striga asiatica HOM05D002504 ORTHO05D007555 1.2e-84 317.8 335 49.9
ATR1120G016 Amborella trichopoda HOM05D002504 ORTHO05D007555 3.6e-73 279.6 421 43.0
Dinv02434 Davidia involucrata HOM05D002504 ORTHO05D007555 2.7e-68 263.5 181 74.6
ECA236G0190 Erigeron canadensis HOM05D002504 ORTHO05D007332 1.3e-62 244.6 295 44.7
Os01g0112100 Oryza sativa ssp. japonica HOM05D002504 ORTHO05D007555 9.9e-47 191.8 246 40.2
Zm00001eb334590 Zea mays HOM05D002504 ORTHO05D007555 4.5e-39 166.4 225 37.3
Zm00001eb126250 Zea mays HOM05D002504 ORTHO05D007555 3.8e-38 163.3 368 29.3
Nn5g27265 Nelumbo nucifera HOM05D002504 ORTHO05D007555 4.9e-38 162.9 431 34.6
SEGI_18201 Sequoiadendron giganteum HOM05D002504 ORTHO05D007555 1.2e-36 158.3 402 30.3
Duzib205G0461 Durio zibethinus HOM05D002504 ORTHO05D007555 3.5e-36 156.8 311 36.3
Ciclev10033409m.g Citrus clementina HOM05D002504 ORTHO05D007555 1.5e-31 141.4 180 45.0
Aa31LG9G8990 Aethionema arabicum HOM05D000710 ORTHO05D000336 2.6e-31 140.6 268 36.2
Pp3c1_3820 Physcomitrium patens HOM05D002504 ORTHO05D007555 7.9e-28 129.0 374 29.7
Pp3c1_3850 Physcomitrium patens HOM05D002504 ORTHO05D007555 7.9e-28 129.0 374 29.7
BcaB07g32205 Brassica carinata HOM05D002504 ORTHO05D007555 1.1e-26 125.2 389 29.6
AagrBONN_evm.TU.Sc2ySwM_369.370 Anthoceros agrestis HOM05D002504 ORTHO05D007555 1.4e-24 118.2 347 28.0
Sabra12G0030300 Salix brachista HOM05D002504 ORTHO05D007555 3.4e-23 113.6 183 41.5
Mapoly0028s0021 Marchantia polymorpha HOM05D002504 ORTHO05D007555 1.0e-22 112.1 372 25.3
SMO367G0630 Selaginella moellendorffii HOM05D002504 ORTHO05D007555 4.3e-18 96.7 361 26.0
arahy.Tifrunner.gnm1.ann1.8LRZ9F Arachis hypogaea HOM05D002504 ORTHO05D007555 1.8e-16 91.3 181 33.1
CBR_g26261 Chara braunii HOM05D002504 ORTHO05D007555 3.0e-11 73.9 276 27.5
Dinv09820 Davidia involucrata HOM05D000025 ORTHO05D000450 7.7e-07 59.3 47 63.8
AagrBONN_evm.TU.Sc2ySwM_362.2581 Anthoceros agrestis HOM05D002504 ORTHO05D007555 6.5e-06 56.2 169 26.0


User provided reference genes

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