Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR622G0902 Trochodendron aralioides HOM05D004795 ORTHO05D005518 1.3e-109 399.8 214 100.0
TAR629G1480 Trochodendron aralioides HOM05D004795 ORTHO05D005518 8.0e-67 257.7 219 68.9
Nn3g17899 Nelumbo nucifera HOM05D004795 ORTHO05D005518 4.0e-58 228.8 218 63.3
TAR371G0696 Trochodendron aralioides HOM05D004795 ORTHO05D005518 3.6e-51 205.7 203 63.5
QL02p051034 Quercus lobata HOM05D004795 ORTHO05D005518 4.1e-47 192.2 223 57.0
QL12p016552 Quercus lobata HOM05D004795 ORTHO05D005518 4.1e-47 192.2 223 57.0
Cfa007915 Carpinus fangiana HOM05D004795 ORTHO05D005518 5.9e-46 188.3 220 58.6
CiPaw.03G062800 Carya illinoinensis HOM05D004795 ORTHO05D005518 1.4e-42 177.2 223 54.3
CiPaw.04G043000 Carya illinoinensis HOM05D004795 ORTHO05D005518 2.6e-41 172.9 223 54.3
Haze_14167 Corylus avellana HOM05D004795 ORTHO05D005518 4.4e-41 172.2 220 55.0
COL.COLO4_09348 Corchorus olitorius HOM05D004795 ORTHO05D005518 2.4e-39 166.4 225 52.9
Dinv33956 Davidia involucrata HOM05D001490 ORTHO05D001450 2.0e-38 163.3 180 59.4
MD17G1245500 Malus domestica HOM05D004795 ORTHO05D005518 3.5e-38 162.5 228 51.3
TWI77G0518 Tripterygium wilfordii HOM05D004795 ORTHO05D005518 3.5e-38 162.5 220 50.0
MD09G1253700 Malus domestica HOM05D004795 ORTHO05D005518 1.0e-37 161.0 228 51.8
Thecc.04G132300 Theobroma cacao HOM05D004795 ORTHO05D005518 1.0e-37 161.0 224 53.6
Manes.02G069600 Manihot esculenta HOM05D004795 ORTHO05D005518 1.3e-37 160.6 204 54.9
Prupe.3G143600 Prunus persica HOM05D004795 ORTHO05D005518 3.0e-37 159.5 226 53.5
TWI53G1522 Tripterygium wilfordii HOM05D004795 ORTHO05D005518 8.6e-37 157.9 220 51.4
Sabra17G0096100 Salix brachista HOM05D004795 ORTHO05D005518 2.8e-35 152.9 244 47.1
Duzib133G0847 Durio zibethinus HOM05D004795 ORTHO05D005518 6.2e-35 151.8 212 51.9
Duzib211G0180 Durio zibethinus HOM05D004795 ORTHO05D005518 6.2e-35 151.8 221 50.2
CAN.G625.30 Capsicum annuum HOM05D004795 ORTHO05D005518 1.0e-34 151.0 217 47.5
Duzib138G0938 Durio zibethinus HOM05D004795 ORTHO05D005518 1.0e-34 151.0 225 50.7
Rhsim10G0068600 Rhododendron simsii HOM05D004795 ORTHO05D005518 1.0e-34 151.0 226 46.5
Sopen02g030830 Solanum pennellii HOM05D004795 ORTHO05D005518 2.3e-34 149.8 216 48.1
MSTRG.3555 Avicennia marina HOM05D004795 ORTHO05D005518 3.1e-34 149.4 229 48.0
Nitab4.5_0000912g0060 Nicotiana tabacum HOM05D004795 ORTHO05D005518 3.1e-34 149.4 218 47.2
Potri.017G116100 Populus trichocarpa HOM05D004795 ORTHO05D005518 1.5e-33 147.1 244 46.7
Cc07_g08730 Coffea canephora HOM05D004795 ORTHO05D005518 2.0e-33 146.7 222 46.4
RcHm_v2.0_Chr2g0148201 Rosa chinensis HOM05D004795 ORTHO05D005518 5.8e-33 145.2 222 51.4
Sabra04G0081300 Salix brachista HOM05D004795 ORTHO05D005518 2.9e-32 142.9 218 49.1
PGR004G2449 Punica granatum HOM05D004795 ORTHO05D005518 4.9e-32 142.1 222 47.3
PGSC0003DMG402026390 Solanum tuberosum HOM05D004795 ORTHO05D005518 4.9e-32 142.1 216 47.2
CANSAT78G0274 Cannabis sativa HOM05D004795 ORTHO05D005518 6.4e-32 141.7 229 48.9
Cpa.g.sc170.57 Carica papaya HOM05D004795 ORTHO05D005518 8.3e-32 141.4 242 47.9
FAN14G2363 Fragaria x ananassa HOM05D004795 ORTHO05D005518 5.4e-31 138.7 219 50.7
FAN14G5069 Fragaria x ananassa HOM05D004795 ORTHO05D005518 5.4e-31 138.7 219 50.7
Manes.01G111300 Manihot esculenta HOM05D004795 ORTHO05D005518 5.4e-31 138.7 204 47.5
FAN02G3195 Fragaria x ananassa HOM05D004795 ORTHO05D005518 9.2e-31 137.9 212 51.4
FAN05G2248 Fragaria x ananassa HOM05D004795 ORTHO05D005518 9.2e-31 137.9 215 51.2
Atru.chr1.1662 Acer truncatum HOM05D004795 ORTHO05D005518 4.6e-30 135.6 216 47.7
FvH4_6g36230 Fragaria vesca HOM05D004795 ORTHO05D005518 6.0e-30 135.2 221 49.8
Glyma.13G045200 Glycine max HOM05D004795 ORTHO05D005518 3.0e-29 132.9 224 46.0
Oeu016627.1 Olea europaea HOM05D004795 ORTHO05D005518 3.0e-29 132.9 226 45.6
ClCG05G012330 Citrullus lanatus HOM05D004795 ORTHO05D005518 6.6e-29 131.7 211 47.4
Peaxi162Scf00394g00712 Petunia axillaris HOM05D004795 ORTHO05D005518 6.6e-29 131.7 170 52.9
CsaV3_3G020240 Cucumis sativus L. HOM05D004795 ORTHO05D005518 1.1e-28 131.0 196 50.0
Phvul.008G007200 Phaseolus vulgaris HOM05D004795 ORTHO05D005518 1.1e-28 131.0 220 47.3
VMungo1383G1737 Vigna mungo HOM05D004795 ORTHO05D005518 2.5e-28 129.8 185 49.2
Glyma.08G366700 Glycine max HOM05D004795 ORTHO05D005518 3.3e-28 129.4 173 53.2
Ciclev10012794m.g Citrus clementina HOM05D004795 ORTHO05D005518 4.3e-28 129.0 210 48.6
arahy.Tifrunner.gnm1.ann1.HZ9SBP Arachis hypogaea HOM05D001490 ORTHO05D005518 7.3e-28 128.3 243 44.4
Gohir.D11G325800 Gossypium hirsutum HOM05D004795 ORTHO05D005518 7.3e-28 128.3 224 45.1
VMungo0464G1679 Vigna mungo HOM05D004795 ORTHO05D005518 1.6e-27 127.1 222 43.2
DCAR_025909 Daucus carota HOM05D004795 ORTHO05D005518 2.1e-27 126.7 213 46.9
Aqoxy3G00247 Aquilegia oxysepala HOM05D004795 ORTHO05D005518 2.8e-27 126.3 242 42.1
Gohir.D11G325700 Gossypium hirsutum HOM05D004795 ORTHO05D005518 2.8e-27 126.3 210 45.7
MELO3C023735.2 Cucumis melo HOM05D004795 ORTHO05D005518 8.1e-27 124.8 177 49.7
Eucgr.J01506 Eucalyptus grandis HOM05D004795 ORTHO05D005518 2.3e-26 123.2 210 46.7
Hma1.2p1_1109F.1_g258120 Hydrangea macrophylla HOM05D004795 ORTHO05D005518 3.1e-26 122.9 222 43.7
Oeu050378.1 Olea europaea HOM05D004795 ORTHO05D005518 5.2e-26 122.1 228 43.9
Glyma.18G295700 Glycine max HOM05D004795 ORTHO05D005518 6.8e-26 121.7 229 47.2
Sed0015257 Sechium edule HOM05D004795 ORTHO05D005518 1.5e-25 120.6 213 44.6
Oeu039734.1 Olea europaea HOM05D004795 ORTHO05D005518 1.7e-24 117.1 211 42.2
FAN09G4185 Fragaria x ananassa HOM05D004795 ORTHO05D005518 3.7e-24 115.9 209 47.4
Gohir.D11G326300 Gossypium hirsutum HOM05D004795 ORTHO05D005518 6.4e-24 115.2 224 42.9
Migut.L00330 Erythranthe guttata HOM05D004795 ORTHO05D005518 7.1e-23 111.7 233 39.5
PGR042G3836 Punica granatum HOM05D004795 ORTHO05D005518 2.7e-22 109.8 202 44.6
Ah.16g101690 Amaranthus hybridus HOM05D004795 ORTHO05D005518 3.5e-22 109.4 222 43.7
Lj1g0003158 Lotus japonicus HOM05D004795 ORTHO05D005518 3.5e-22 109.4 199 42.7
Phvul.004G066100 Phaseolus vulgaris HOM05D004795 ORTHO05D005518 4.6e-22 109.0 214 43.0
Sc11g0008370 Simmondsia chinensis HOM05D004795 ORTHO05D005518 1.0e-21 107.8 190 43.2
Glyma.19G049900 Glycine max HOM05D004795 ORTHO05D005518 2.3e-21 106.7 227 40.5
MBI09_g36997_MAGBIO Magnolia biondii HOM05D004795 ORTHO05D005518 1.5e-20 104.0 207 42.5
Ca_08078_v3 Cicer arietinum L. HOM05D004795 ORTHO05D005518 3.3e-20 102.8 182 44.5
Gohir.A12G054400 Gossypium hirsutum HOM05D004795 ORTHO05D005518 9.5e-20 101.3 179 44.7
HanXRQChr11g0330661 Helianthus annuus HOM05D004795 ORTHO05D005518 1.2e-19 100.9 169 44.4
HanXRQChr11g0325401 Helianthus annuus HOM05D004795 ORTHO05D005518 1.6e-19 100.5 181 44.8
Gohir.D12G053200 Gossypium hirsutum HOM05D004795 ORTHO05D005518 2.1e-19 100.1 179 43.6
Aa31LG9G17140 Aethionema arabicum HOM05D004795 ORTHO05D005518 6.2e-19 98.6 233 37.3
Lsat_1_v5_gn_4_154580 Lactuca sativa HOM05D004795 ORTHO05D005518 8.1e-19 98.2 212 39.2
Gorai.008G056400 Gossypium raimondii HOM05D004795 ORTHO05D005518 1.1e-18 97.8 179 43.0
Solyc02g086140.2 Solanum lycopersicum HOM05D004795 ORTHO05D005518 1.4e-18 97.4 111 53.2
Thhalv10027906m.g Eutrema salsugineum HOM05D004795 ORTHO05D005518 1.8e-18 97.1 233 38.6
Lalb_Chr10g0091311 Lupinus albus HOM05D004795 ORTHO05D005518 5.2e-18 95.5 187 41.2
Nitab4.5_0004416g0090 Nicotiana tabacum HOM05D004795 ORTHO05D005518 2.6e-17 93.2 156 43.6
Gorai.007G182000 Gossypium raimondii HOM05D004795 ORTHO05D005518 9.9e-17 91.3 206 40.8
Gohir.A11G163900 Gossypium hirsutum HOM05D004795 ORTHO05D005518 1.7e-16 90.5 206 40.8
Lalb_Chr02g0158191 Lupinus albus HOM05D004795 ORTHO05D005518 1.7e-16 90.5 183 39.3
BraA02t06447Z Brassica rapa HOM05D004795 ORTHO05D005518 3.8e-16 89.4 240 34.6
TPR.G31528 Trifolium pratense HOM05D004795 ORTHO05D005518 3.8e-16 89.4 195 37.9
Lj2g0010000 Lotus japonicus HOM05D004795 ORTHO05D005518 1.4e-15 87.4 211 39.8
A04p11270 Brassica napus HOM05D004795 ORTHO05D005518 1.9e-15 87.0 238 36.1
BraA04t16787Z Brassica rapa HOM05D004795 ORTHO05D005518 1.9e-15 87.0 238 36.1
SGA_v2.0_scaffold115G32104 Striga asiatica HOM05D004795 ORTHO05D005518 1.9e-15 87.0 188 40.4
Gorai.007G356700 Gossypium raimondii HOM05D004795 ORTHO05D005518 4.1e-15 85.9 180 41.1
BcaB06g27183 Brassica carinata HOM05D004795 ORTHO05D005518 1.2e-14 84.3 234 37.2
BolC2t08386H Brassica oleracea HOM05D004795 ORTHO05D005518 1.2e-14 84.3 217 33.6
BolC4t26077H Brassica oleracea HOM05D004795 ORTHO05D005518 1.6e-14 84.0 238 35.3
ECA232G0641 Erigeron canadensis HOM05D000072 ORTHO05D000026 1.6e-14 84.0 128 47.7
Potri.004G098200 Populus trichocarpa HOM05D004795 ORTHO05D005518 1.6e-14 84.0 129 44.2
BcaC02g09641 Brassica carinata HOM05D004795 ORTHO05D005518 2.1e-14 83.6 237 35.4
Medtr6g018780 Medicago truncatula HOM05D004795 ORTHO05D005518 2.1e-14 83.6 122 45.9
THA.LOC104822635 Tarenaya hassleriana HOM05D004795 ORTHO05D005518 2.1e-14 83.6 232 37.1
BcaB05g24226 Brassica carinata HOM05D004795 ORTHO05D005518 2.7e-14 83.2 240 33.3
Carub.0002s1332 Capsella rubella HOM05D004795 ORTHO05D005518 2.7e-14 83.2 186 40.3
AT5G38300 Arabidopsis thaliana HOM05D004795 ORTHO05D005518 7.8e-14 81.6 258 34.1
C04p44990 Brassica napus HOM05D004795 ORTHO05D005518 7.8e-14 81.6 242 36.4
Medtr7g082230 Medicago truncatula HOM05D004795 ORTHO05D005518 1.0e-13 81.3 186 34.9
BcaC03g14785 Brassica carinata HOM05D004795 ORTHO05D005518 1.3e-13 80.9 220 34.5
CARHR214290 Cardamine hirsuta HOM05D004795 ORTHO05D005518 1.3e-13 80.9 240 35.4
Sp7g03720 Schrenkiella parvula HOM05D004795 ORTHO05D005518 1.3e-13 80.9 237 35.4
THA.LOC104805574 Tarenaya hassleriana HOM05D004795 ORTHO05D005518 2.3e-13 80.1 240 33.8
CAN.G358.61 Capsicum annuum HOM05D004795 ORTHO05D005518 3.9e-13 79.3 80 57.5
Sp5g21970 Schrenkiella parvula HOM05D004795 ORTHO05D005518 5.1e-13 79.0 251 36.3
PSO532G0010 Papaver somniferum HOM05D004795 ORTHO05D005518 8.6e-13 78.2 148 42.6
Aa31LG2G3430 Aethionema arabicum HOM05D004795 ORTHO05D005518 1.9e-12 77.0 239 33.9
A07p33770 Brassica napus HOM05D004795 ORTHO05D005518 1.9e-12 77.0 227 37.4
AT1G67035 Arabidopsis thaliana HOM05D004795 ORTHO05D005518 7.3e-12 75.1 190 38.4
Thhalv10019032m.g Eutrema salsugineum HOM05D004795 ORTHO05D005518 1.6e-11 73.9 257 33.1
PSO541G1476 Papaver somniferum HOM05D004795 ORTHO05D005518 3.6e-11 72.8 175 37.1
C02p22330 Brassica napus HOM05D004795 ORTHO05D005518 4.7e-11 72.4 215 33.5
TPR.G32442 Trifolium pratense HOM05D004795 ORTHO05D005518 4.7e-11 72.4 123 45.5
BraA07t31003Z Brassica rapa HOM05D004795 ORTHO05D005518 6.2e-11 72.0 227 37.4
AUR62023290 Chenopodium quinoa HOM05D004795 ORTHO05D005518 6.2e-11 72.0 124 46.8
PSO541G4271 Papaver somniferum HOM05D004795 ORTHO05D005518 8.1e-11 71.6 158 37.3
Psat3g098240 Pisum sativum HOM05D004795 ORTHO05D005518 8.1e-11 71.6 189 37.0
unitig_32.g11886 Utricularia gibba HOM05D004795 ORTHO05D005518 8.1e-11 71.6 189 38.1
AL7G52500 Arabidopsis lyrata HOM05D004795 ORTHO05D005518 1.1e-10 71.2 257 32.3
BolC6t39123H Brassica oleracea HOM05D004795 ORTHO05D005518 1.8e-10 70.5 229 34.9
C06p43160 Brassica napus HOM05D004795 ORTHO05D005518 6.9e-10 68.6 231 35.1
ATR0752G028 Amborella trichopoda HOM05D004795 ORTHO05D005518 1.2e-09 67.8 142 38.0
AUR62043981 Chenopodium quinoa HOM05D004795 ORTHO05D005518 2.0e-09 67.0 260 33.5
Actinidia15890 Actinidia chinensis HOM05D004795 ORTHO05D005518 4.4e-09 65.9 210 34.3
CAN.G1425.14 Capsicum annuum HOM05D004795 ORTHO05D005518 5.8e-09 65.5 66 59.1
Ah.06g188560 Amaranthus hybridus HOM05D004795 ORTHO05D005518 7.6e-09 65.1 155 38.7
AUR62009011 Chenopodium quinoa HOM05D004795 ORTHO05D005518 1.3e-08 64.3 101 51.5
CARHR059450 Cardamine hirsuta HOM05D004795 ORTHO05D005518 1.7e-08 63.9 191 34.6
SalBow5G0757 Salvia bowleyana HOM05D004795 ORTHO05D005518 1.7e-08 63.9 84 50.0
unitig_748.g8746 Utricularia gibba HOM05D004795 ORTHO05D005518 2.9e-08 63.2 114 39.5
AL2G25370 Arabidopsis lyrata HOM05D004795 ORTHO05D005518 4.9e-08 62.4 192 34.9
Gohir.D11G170200 Gossypium hirsutum HOM05D004795 ORTHO05D005518 6.4e-08 62.0 187 34.2
Gorai.001G202200 Gossypium raimondii HOM05D004795 ORTHO05D005518 8.4e-08 61.6 128 39.1
Psat1g081000 Pisum sativum HOM05D004795 ORTHO05D005518 1.4e-07 60.8 271 30.3
Thecc.07G096700 Theobroma cacao HOM05D004795 ORTHO05D002259 2.4e-07 60.1 89 46.1
BcaNung06250 Brassica carinata HOM05D004795 ORTHO05D005518 7.1e-07 58.5 207 34.3
Carub.0005s1274 Capsella rubella HOM05D004795 ORTHO05D005518 9.3e-07 58.2 218 33.0


User provided reference genes

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