Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR622G0886 Trochodendron aralioides HOM05D005538 ORTHO05D007055 1.5e-88 329.3 150 100.0
TAR371G0765 Trochodendron aralioides HOM05D005538 ORTHO05D007055 1.6e-77 292.7 152 86.2
Hma1.2p1_0459F.1_g157240 Hydrangea macrophylla HOM05D005538 ORTHO05D007055 5.2e-73 277.7 155 81.9
TAR629G0377 Trochodendron aralioides HOM05D005538 ORTHO05D007055 1.2e-72 276.6 153 82.4
Actinidia30605 Actinidia chinensis HOM05D005538 ORTHO05D007055 5.4e-70 267.7 150 79.3
Dinv06880 Davidia involucrata HOM05D005538 ORTHO05D007055 4.6e-69 264.6 151 79.5
Oeu003281.1 Olea europaea HOM05D005538 ORTHO05D007055 4.6e-69 264.6 149 79.2
Actinidia22132 Actinidia chinensis HOM05D005538 ORTHO05D007055 3.0e-68 261.9 150 79.3
CSS0040217 Camellia sinensis var. sinensis HOM05D005538 ORTHO05D007055 1.1e-67 260.0 150 76.7
Haze_12470 Corylus avellana HOM05D005538 ORTHO05D007055 9.5e-67 256.9 150 78.0
Cfa009412 Carpinus fangiana HOM05D005538 ORTHO05D007055 1.6e-66 256.1 150 77.3
Migut.K01033 Erythranthe guttata HOM05D005538 ORTHO05D007055 4.7e-66 254.6 150 75.3
Peaxi162Scf00220g00119 Petunia axillaris HOM05D005538 ORTHO05D007055 6.2e-66 254.2 150 75.3
SGA_v2.0_scaffold80G25945 Striga asiatica HOM05D005538 ORTHO05D007055 8.1e-66 253.8 150 76.7
vmacro22631 Vaccinium macrocarpon HOM05D005538 ORTHO05D007055 8.1e-66 253.8 149 76.5
CiPaw.05G104000 Carya illinoinensis HOM05D005538 ORTHO05D007055 1.1e-65 253.4 150 76.0
Potri.001G061900 Populus trichocarpa HOM05D005538 ORTHO05D007055 3.1e-65 251.9 150 74.0
Nn3g16327 Nelumbo nucifera HOM05D005538 ORTHO05D007055 6.8e-65 250.8 154 76.6
SalBow2G1516 Salvia bowleyana HOM05D005538 ORTHO05D007055 6.8e-65 250.8 149 77.2
Potri.003G165900 Populus trichocarpa HOM05D005538 ORTHO05D007055 8.9e-65 250.4 150 74.7
Sabra03G0121100 Salix brachista HOM05D005538 ORTHO05D007055 1.2e-64 250.0 150 74.7
PGSC0003DMG400030010 Solanum tuberosum HOM05D005538 ORTHO05D007055 2.6e-64 248.8 153 73.2
MBI07_g37483_MAGBIO Magnolia biondii HOM05D005538 ORTHO05D007055 5.8e-64 247.7 159 71.7
Manes.08G103200 Manihot esculenta HOM05D005538 ORTHO05D007055 2.2e-63 245.7 150 72.7
Lj3A1076T34 Lonicera japonica HOM05D005538 ORTHO05D007055 3.7e-63 245.0 166 68.7
Aqoxy3G01758 Aquilegia oxysepala HOM05D005538 ORTHO05D007055 6.4e-63 244.2 156 73.1
CiPaw.06G107500 Carya illinoinensis HOM05D005538 ORTHO05D007055 6.4e-63 244.2 150 74.7
PSO478G3672 Papaver somniferum HOM05D005538 ORTHO05D007055 8.3e-63 243.8 154 73.4
HanXRQChr06g0175181 Helianthus annuus HOM05D005538 ORTHO05D007055 1.1e-62 243.4 148 74.3
PSO017G1114 Papaver somniferum HOM05D005538 ORTHO05D007055 1.1e-62 243.4 154 73.4
Ciclev10033047m.g Citrus clementina HOM05D005538 ORTHO05D007055 1.4e-62 243.0 150 73.3
GSVIVG01000954001 Vitis vinifera HOM05D005538 ORTHO05D007055 2.4e-62 242.3 141 77.3
CANSAT56G2313 Cannabis sativa HOM05D005538 ORTHO05D007055 4.1e-62 241.5 149 71.8
Sopen01g005330 Solanum pennellii HOM05D005538 ORTHO05D007055 5.4e-62 241.1 153 71.2
Solyc01g009780.3 Solanum lycopersicum HOM05D005538 ORTHO05D007055 7.1e-62 240.7 153 71.2
Cc11_g17450 Coffea canephora HOM05D005538 ORTHO05D007055 9.2e-62 240.4 130 81.5
Eucgr.B03544 Eucalyptus grandis HOM05D005538 ORTHO05D007055 9.2e-62 240.4 150 71.3
Manes.09G185800 Manihot esculenta HOM05D005538 ORTHO05D007055 2.7e-61 238.8 150 71.3
Duzib052G1117 Durio zibethinus HOM05D005538 ORTHO05D007055 3.5e-61 238.4 150 71.3
TWI18G0823 Tripterygium wilfordii HOM05D005538 ORTHO05D007055 3.5e-61 238.4 150 72.0
unitig_8.g3121 Utricularia gibba HOM05D005538 ORTHO05D007055 4.6e-61 238.0 143 73.4
QL03p050357 Quercus lobata HOM05D005538 ORTHO05D007055 1.0e-60 236.9 150 72.0
Thecc.02G196400 Theobroma cacao HOM05D005538 ORTHO05D007055 3.0e-60 235.3 150 70.0
Ah.03g135760 Amaranthus hybridus HOM05D005538 ORTHO05D007055 3.9e-60 235.0 150 68.0
ATR0582G064 Amborella trichopoda HOM05D005538 ORTHO05D007055 3.9e-60 235.0 151 71.5
MELO3C022346.2 Cucumis melo HOM05D005538 ORTHO05D007055 3.9e-60 235.0 150 70.7
Hund25495 Selenicereus undatus HOM05D005538 ORTHO05D007055 5.1e-60 234.6 159 68.6
Gohir.A12G140500 Gossypium hirsutum HOM05D005538 ORTHO05D007055 6.6e-60 234.2 150 69.3
CDE05G2048 Ceratophyllum demersum HOM05D005538 ORTHO05D007055 8.6e-60 233.8 150 70.0
CsaV3_6G007860 Cucumis sativus L. HOM05D005538 ORTHO05D007055 8.6e-60 233.8 150 70.7
Prupe.1G219100 Prunus persica HOM05D005538 ORTHO05D007055 2.5e-59 232.3 150 71.3
Nitab4.5_0001600g0070 Nicotiana tabacum HOM05D005538 ORTHO05D007055 3.3e-59 231.9 145 72.4
CDE05G1586 Ceratophyllum demersum HOM05D005538 ORTHO05D007055 4.3e-59 231.5 150 70.0
Duzib248G0674 Durio zibethinus HOM05D005538 ORTHO05D007055 5.6e-59 231.1 150 69.3
ECA246G0794 Erigeron canadensis HOM05D005538 ORTHO05D007055 7.3e-59 230.7 158 67.1
MSTRG.469 Avicennia marina HOM05D005538 ORTHO05D007055 1.2e-58 229.9 169 63.3
Glyma.08G360100 Glycine max HOM05D005538 ORTHO05D007055 1.2e-58 229.9 145 73.1
Gorai.008G156500 Gossypium raimondii HOM05D005538 ORTHO05D007055 1.2e-58 229.9 150 68.0
HanXRQChr17g0540491 Helianthus annuus HOM05D005538 ORTHO05D007055 2.1e-58 229.2 149 71.8
Gohir.D12G145100 Gossypium hirsutum HOM05D005538 ORTHO05D007055 2.8e-58 228.8 150 67.3
EL10Ac6g13582 Beta vulgaris HOM05D005538 ORTHO05D007055 3.6e-58 228.4 159 63.5
AUR62028865 Chenopodium quinoa HOM05D005538 ORTHO05D007055 3.6e-58 228.4 165 62.4
VMungo1383G2546 Vigna mungo HOM05D005538 ORTHO05D007055 4.7e-58 228.0 147 72.1
Phvul.008G000500 Phaseolus vulgaris HOM05D005538 ORTHO05D007055 8.1e-58 227.3 147 71.4
THA.LOC104825475 Tarenaya hassleriana HOM05D005538 ORTHO05D007055 1.1e-57 226.9 150 67.3
Glyma.18G301900 Glycine max HOM05D005538 ORTHO05D007055 1.8e-57 226.1 148 70.9
ClCG06G001820 Citrullus lanatus HOM05D005538 ORTHO05D007055 4.0e-57 224.9 150 70.0
MD16G1126800 Malus domestica HOM05D005538 ORTHO05D007055 5.2e-57 224.6 150 68.7
C02p05970 Brassica napus HOM05D005538 ORTHO05D007055 8.9e-57 223.8 150 66.0
BolC2t06540H Brassica oleracea HOM05D005538 ORTHO05D007055 8.9e-57 223.8 150 66.0
BraA10t44563Z Brassica rapa HOM05D005538 ORTHO05D007055 1.2e-56 223.4 150 65.3
CAN.G1277.4 Capsicum annuum HOM05D005538 ORTHO05D007055 1.2e-56 223.4 157 66.2
BcaNung01169 Brassica carinata HOM05D005538 ORTHO05D007055 2.6e-56 222.2 150 66.0
A02p01730 Brassica napus HOM05D005538 ORTHO05D007055 4.4e-56 221.5 150 65.3
BraA02t05152Z Brassica rapa HOM05D005538 ORTHO05D007055 4.4e-56 221.5 150 65.3
Thhalv10014995m.g Eutrema salsugineum HOM05D005538 ORTHO05D007055 4.4e-56 221.5 150 64.7
A10p25020 Brassica napus HOM05D005538 ORTHO05D007055 5.8e-56 221.1 151 65.6
C09p63880 Brassica napus HOM05D005538 ORTHO05D007055 7.6e-56 220.7 151 65.6
BolC9t59228H Brassica oleracea HOM05D005538 ORTHO05D007055 7.6e-56 220.7 151 65.6
Gohir.A03G151200 Gossypium hirsutum HOM05D005538 ORTHO05D007055 7.6e-56 220.7 150 66.0
Gohir.D02G174200 Gossypium hirsutum HOM05D005538 ORTHO05D007055 7.6e-56 220.7 150 66.0
Gorai.005G195900 Gossypium raimondii HOM05D005538 ORTHO05D007055 7.6e-56 220.7 150 66.0
COL.COLO4_34942 Corchorus olitorius HOM05D005538 ORTHO05D007055 9.9e-56 220.3 148 64.9
AT5G13190 Arabidopsis thaliana HOM05D005538 ORTHO05D007055 1.3e-55 219.9 150 64.7
Sp6g30790 Schrenkiella parvula HOM05D005538 ORTHO05D007055 2.2e-55 219.2 150 64.7
Carub.0006s1136 Capsella rubella HOM05D005538 ORTHO05D007055 2.9e-55 218.8 150 64.0
Rhsim12G0021000 Rhododendron simsii HOM05D005538 ORTHO05D007055 2.9e-55 218.8 155 66.5
Sed0021477 Sechium edule HOM05D005538 ORTHO05D007055 2.9e-55 218.8 150 67.3
MD13G1126300 Malus domestica HOM05D005538 ORTHO05D007055 3.8e-55 218.4 150 66.0
AL6G23800 Arabidopsis lyrata HOM05D005538 ORTHO05D007055 4.9e-55 218.0 150 64.0
Ah.02g131140 Amaranthus hybridus HOM05D005538 ORTHO05D007055 1.9e-54 216.1 150 64.7
Ca_06515_v3 Cicer arietinum L. HOM05D005538 ORTHO05D007055 7.1e-54 214.2 121 76.0
FAN17G2587 Fragaria x ananassa HOM05D005538 ORTHO05D007055 2.1e-53 212.6 145 66.9
Gohir.D01G019700 Gossypium hirsutum HOM05D005538 ORTHO05D007055 2.7e-53 212.2 148 65.5
Aa31LG3G14470 Aethionema arabicum HOM05D005538 ORTHO05D007055 4.6e-53 211.5 150 63.3
Gorai.002G022100 Gossypium raimondii HOM05D005538 ORTHO05D007055 4.6e-53 211.5 148 65.5
Gohir.A01G021300 Gossypium hirsutum HOM05D005538 ORTHO05D007055 7.8e-53 210.7 150 64.0
TPR.G15629 Trifolium pratense HOM05D005538 ORTHO05D007055 7.8e-53 210.7 121 76.9
FAN12G2387 Fragaria x ananassa HOM05D005538 ORTHO05D007055 1.7e-52 209.5 148 64.9
RcHm_v2.0_Chr4g0429351 Rosa chinensis HOM05D005538 ORTHO05D007055 1.7e-52 209.5 145 66.2
Medtr7g005440 Medicago truncatula HOM05D005538 ORTHO05D007055 3.0e-52 208.8 118 76.3
Lj1g0020005 Lotus japonicus HOM05D005538 ORTHO05D007055 8.6e-52 207.2 112 81.2
FAN07G2678 Fragaria x ananassa HOM05D005538 ORTHO05D007055 1.5e-51 206.5 141 66.7
CARHR200280 Cardamine hirsuta HOM05D005538 ORTHO05D007055 3.3e-51 205.3 157 60.5
Psat3g208320 Pisum sativum HOM05D005538 ORTHO05D007055 2.8e-50 202.2 118 74.6
Os02g0515600 Oryza sativa ssp. japonica HOM05D005538 ORTHO05D007055 3.6e-50 201.8 150 63.3
Sc04g0010460 Simmondsia chinensis HOM05D005538 ORTHO05D007055 6.9e-49 197.6 126 70.6
Hund28220 Selenicereus undatus HOM05D005538 ORTHO05D007055 4.2e-46 188.3 147 59.9
Hund28225 Selenicereus undatus HOM05D005538 ORTHO05D007055 4.2e-46 188.3 147 59.9
Zm00001eb241880 Zea mays HOM05D005538 ORTHO05D007055 2.1e-42 176.0 176 51.1
Atru.chr11.2402 Acer truncatum HOM05D005538 ORTHO05D007055 2.4e-41 172.6 174 48.9
SMO271G0002 Selaginella moellendorffii HOM05D005538 ORTHO05D007055 1.3e-39 166.8 130 58.5
FvH4_4g23080 Fragaria vesca HOM05D005538 ORTHO05D007055 1.2e-37 160.2 118 63.6
Pp3c26_1170 Physcomitrium patens HOM05D005538 ORTHO05D007055 4.6e-37 158.3 145 52.4
AagrBONN_evm.TU.Sc2ySwM_117.1139 Anthoceros agrestis HOM05D005538 ORTHO05D007055 7.9e-37 157.5 119 54.6
CBR_g4442 Chara braunii HOM05D005538 ORTHO05D007055 1.1e-35 153.7 141 51.8
TAR629G2749 Trochodendron aralioides HOM05D005538 ORTHO05D007055 7.4e-35 151.0 81 87.7
TAR628G0286 Trochodendron aralioides HOM05D000367 ORTHO05D001438 3.7e-34 148.7 80 87.5
TWI75G1796 Tripterygium wilfordii HOM05D005538 ORTHO05D007055 9.0e-33 144.1 87 74.7
TAR623G1654 Trochodendron aralioides HOM05D005538 ORTHO05D007055 1.3e-31 140.2 80 83.8
HPP92_011548 Vanilla planifolia HOM05D005538 ORTHO05D007055 2.2e-31 139.4 75 80.0
AagrBONN_evm.TU.Sc2ySwM_117.1282 Anthoceros agrestis HOM05D005538 ORTHO05D007055 1.4e-30 136.7 144 47.2
Oeu039177.1 Olea europaea HOM05D005538 ORTHO05D007055 2.1e-26 122.9 59 88.1
Cpa.g.sc123.51 Carica papaya HOM05D005538 ORTHO05D007055 6.9e-25 117.9 58 81.0
Nitab4.5_0007554g0010 Nicotiana tabacum HOM05D007298 ORTHO05D009226 1.0e-23 114.0 127 51.2
TAR623G0421 Trochodendron aralioides HOM05D004785 ORTHO05D005704 4.9e-23 111.7 55 90.9
Hma1.2p1_0365F.1_g136780 Hydrangea macrophylla HOM05D005538 ORTHO05D007055 4.6e-21 105.1 75 68.0
SalBow8G4168 Salvia bowleyana HOM05D005538 ORTHO05D007055 2.3e-20 102.8 78 60.3
Lsat_1_v5_gn_6_34980 Lactuca sativa HOM05D005538 ORTHO05D007055 8.7e-20 100.9 112 46.4
RcHm_v2.0_Chr4g0404941 Rosa chinensis HOM05D005538 ORTHO05D007055 2.0e-16 89.7 105 46.7
SalBow8G3396 Salvia bowleyana HOM05D018271 ORTHO05D007055 1.0e-12 77.4 57 66.7
RcHm_v2.0_Chr1g0337501 Rosa chinensis HOM05D005538 ORTHO05D007055 3.3e-11 72.4 96 41.7
RcHm_v2.0_Chr5g0057011 Rosa chinensis HOM05D005538 ORTHO05D007055 2.8e-10 69.3 102 37.3
Hma1.2p1_1396F.1_g280590 Hydrangea macrophylla HOM05D005538 ORTHO05D228224 4.8e-10 68.6 69 56.5
BcaB01g05369 Brassica carinata HOM05D005538 ORTHO05D007055 1.1e-09 67.4 120 33.3
DCAR_028448 Daucus carota HOM05D005538 ORTHO05D007055 1.8e-09 66.6 81 43.2
SEGI_18844 Sequoiadendron giganteum HOM05D005538 ORTHO05D007055 2.4e-09 66.2 62 48.4
SEGI_11247 Sequoiadendron giganteum HOM05D005538 ORTHO05D007055 6.9e-09 64.7 60 48.3
SEGI_18352 Sequoiadendron giganteum HOM05D005538 ORTHO05D012435 1.2e-08 63.9 60 50.0
SEGI_29074 Sequoiadendron giganteum HOM05D005538 ORTHO05D012435 5.9e-08 61.6 59 47.5
SEGI_30741 Sequoiadendron giganteum HOM05D005538 ORTHO05D012435 5.9e-08 61.6 59 47.5
HPP92_011549 Vanilla planifolia HOM05D005538 ORTHO05D431340 5.5e-06 55.1 52 50.0


User provided reference genes

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