Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR622G0812 Trochodendron aralioides HOM05D000761 ORTHO05D003834 8.1e-48 193.4 94 100.0
TAR374G1707 Trochodendron aralioides HOM05D000761 ORTHO05D003834 1.2e-14 83.2 48 75.0
MD06G1079300 Malus domestica HOM05D000761 ORTHO05D003834 2.6e-14 82.0 52 69.2
PGR031G3444 Punica granatum HOM05D000761 ORTHO05D003834 3.8e-13 78.2 63 58.7
Atru.chr9.2219 Acer truncatum HOM05D000761 ORTHO05D003834 1.1e-12 76.6 74 52.7
Potri.003G124800 Populus trichocarpa HOM05D000761 ORTHO05D003834 1.1e-12 76.6 47 68.1
Eucgr.D01865 Eucalyptus grandis HOM05D000761 ORTHO05D003834 2.5e-12 75.5 79 48.1
Dinv38956 Davidia involucrata HOM05D000761 ORTHO05D003834 3.2e-12 75.1 49 65.3
Rhsim02G0227200 Rhododendron simsii HOM05D000761 ORTHO05D003834 3.2e-12 75.1 47 66.0
DCAR_008405 Daucus carota HOM05D000761 ORTHO05D003834 5.5e-12 74.3 66 50.0
Hma1.2p1_0377F.1_g139250 Hydrangea macrophylla HOM05D000761 ORTHO05D003834 5.5e-12 74.3 79 49.4
Sc01g0009460 Simmondsia chinensis HOM05D000761 ORTHO05D003834 5.5e-12 74.3 47 66.0
EL10Ac5g12780 Beta vulgaris HOM05D000761 ORTHO05D003834 7.2e-12 73.9 62 54.8
Haze_08873 Corylus avellana HOM05D000761 ORTHO05D003834 7.2e-12 73.9 52 63.5
Duzib205G1385 Durio zibethinus HOM05D000761 ORTHO05D003834 7.2e-12 73.9 74 50.0
Peaxi162Scf00119g00412 Petunia axillaris HOM05D000761 ORTHO05D003834 9.4e-12 73.6 69 47.8
RhsimUnG0098700 Rhododendron simsii HOM05D000761 ORTHO05D003834 9.4e-12 73.6 47 63.8
Medtr5g010440 Medicago truncatula HOM05D000761 ORTHO05D003834 1.2e-11 73.2 74 50.0
Thecc.03G276400 Theobroma cacao HOM05D000761 ORTHO05D003834 1.2e-11 73.2 74 48.6
COL.COLO4_34437 Corchorus olitorius HOM05D000761 ORTHO05D003834 1.6e-11 72.8 76 46.1
Gohir.A09G192800 Gossypium hirsutum HOM05D000761 ORTHO05D003834 1.6e-11 72.8 74 47.3
Lalb_Chr09g0321071 Lupinus albus HOM05D000761 ORTHO05D003834 1.6e-11 72.8 58 53.4
Manes.02G023500 Manihot esculenta HOM05D000761 ORTHO05D003834 1.6e-11 72.8 51 56.9
AUR62017258 Chenopodium quinoa HOM05D000761 ORTHO05D003834 2.1e-11 72.4 47 63.8
Potri.001G106600 Populus trichocarpa HOM05D000761 ORTHO05D003834 2.1e-11 72.4 47 63.8
Prupe.5G097500 Prunus persica HOM05D000761 ORTHO05D003834 2.1e-11 72.4 52 57.7
Sabra03G0088400 Salix brachista HOM05D000761 ORTHO05D003834 2.1e-11 72.4 51 64.7
Cfa012155 Carpinus fangiana HOM05D000761 ORTHO05D003834 2.7e-11 72.0 52 63.5
AUR62010613 Chenopodium quinoa HOM05D000761 ORTHO05D003834 2.7e-11 72.0 47 61.7
Gohir.D08G199400 Gossypium hirsutum HOM05D000761 ORTHO05D003834 2.7e-11 72.0 70 48.6
Gorai.004G210200 Gossypium raimondii HOM05D000761 ORTHO05D003834 2.7e-11 72.0 70 48.6
QL12p018315 Quercus lobata HOM05D000761 ORTHO05D003834 3.6e-11 71.6 52 63.5
Manes.01G063100 Manihot esculenta HOM05D000761 ORTHO05D003834 4.6e-11 71.2 68 51.5
Lj2A188T37 Lonicera japonica HOM05D000761 ORTHO05D003834 6.1e-11 70.9 52 61.5
Lj8A229T68 Lonicera japonica HOM05D000761 ORTHO05D003834 6.1e-11 70.9 47 63.8
Lj8A232G66 Lonicera japonica HOM05D000761 ORTHO05D003834 6.1e-11 70.9 47 63.8
MD14G1101900 Malus domestica HOM05D000761 ORTHO05D003834 6.1e-11 70.9 52 63.5
Cc08_g14480 Coffea canephora HOM05D000761 ORTHO05D003834 7.9e-11 70.5 52 59.6
Gohir.A08G180700 Gossypium hirsutum HOM05D000761 ORTHO05D003834 7.9e-11 70.5 70 47.1
Gohir.D09G187000 Gossypium hirsutum HOM05D000761 ORTHO05D003834 7.9e-11 70.5 74 45.9
Gorai.006G209800 Gossypium raimondii HOM05D000761 ORTHO05D003834 7.9e-11 70.5 74 45.9
Ah.12g057200 Amaranthus hybridus HOM05D000761 ORTHO05D003834 1.0e-10 70.1 63 49.2
arahy.Tifrunner.gnm1.ann1.BJVD1V Arachis hypogaea HOM05D000761 ORTHO05D003834 1.4e-10 69.7 47 57.4
arahy.Tifrunner.gnm1.ann1.LSX38T Arachis hypogaea HOM05D000761 ORTHO05D003834 1.4e-10 69.7 47 57.4
Ca_24559_v3 Cicer arietinum L. HOM05D000761 ORTHO05D003834 1.4e-10 69.7 47 61.7
Ciclev10019211m.g Citrus clementina HOM05D000761 ORTHO05D003834 1.4e-10 69.7 70 48.6
Nitab4.5_0002270g0050 Nicotiana tabacum HOM05D000761 ORTHO05D003834 1.4e-10 69.7 47 61.7
Nitab4.5_0009194g0010 Nicotiana tabacum HOM05D000761 ORTHO05D003834 1.4e-10 69.7 44 65.9
Solyc08g080830.3 Solanum lycopersicum HOM05D000761 ORTHO05D003834 1.4e-10 69.7 47 61.7
Sopen08g029130 Solanum pennellii HOM05D000761 ORTHO05D003834 1.4e-10 69.7 47 61.7
PGSC0003DMG400012218 Solanum tuberosum HOM05D000761 ORTHO05D003834 1.4e-10 69.7 47 61.7
vmacro11311 Vaccinium macrocarpon HOM05D000761 ORTHO05D003834 1.4e-10 69.7 58 55.2
FvH4_5g02060 Fragaria vesca HOM05D000761 ORTHO05D003834 1.8e-10 69.3 74 44.6
FAN18G4383 Fragaria x ananassa HOM05D000761 ORTHO05D003834 1.8e-10 69.3 74 44.6
Hma1.2p1_1922F.1_g307590 Hydrangea macrophylla HOM05D000761 ORTHO05D003834 1.8e-10 69.3 73 46.6
Hund14750 Selenicereus undatus HOM05D000761 ORTHO05D003834 1.8e-10 69.3 69 52.2
TPR.G6628 Trifolium pratense HOM05D000761 ORTHO05D003834 1.8e-10 69.3 47 59.6
Dinv37659 Davidia involucrata HOM05D000761 ORTHO05D003834 2.3e-10 68.9 45 66.7
Lj4g0002308 Lotus japonicus HOM05D000761 ORTHO05D003834 2.3e-10 68.9 45 62.2
TAR375G0100 Trochodendron aralioides HOM05D000761 ORTHO05D003834 2.3e-10 68.9 52 59.6
Ca_17545_v3 Cicer arietinum L. HOM05D000761 ORTHO05D003834 3.0e-10 68.6 56 50.0
Duzib084G0230 Durio zibethinus HOM05D000761 ORTHO05D003834 3.0e-10 68.6 73 47.9
Lalb_Chr05g0211861 Lupinus albus HOM05D000761 ORTHO05D003834 3.0e-10 68.6 46 60.9
Nitab4.5_0002776g0090 Nicotiana tabacum HOM05D000761 ORTHO05D003834 3.0e-10 68.6 52 53.8
Psat0s748g0080 Pisum sativum HOM05D000761 ORTHO05D003834 3.0e-10 68.6 47 57.4
RcHm_v2.0_Chr7g0198241 Rosa chinensis HOM05D000761 ORTHO05D003834 3.0e-10 68.6 47 57.4
Actinidia14551 Actinidia chinensis HOM05D000761 ORTHO05D003834 3.9e-10 68.2 47 61.7
DCAR_000602 Daucus carota HOM05D000761 ORTHO05D003834 3.9e-10 68.2 75 46.7
PSO063G2339 Papaver somniferum HOM05D000761 ORTHO05D003834 3.9e-10 68.2 58 51.7
Nitab4.5_0000360g0170 Nicotiana tabacum HOM05D000761 ORTHO05D003834 5.1e-10 67.8 52 53.8
Psat7g034600 Pisum sativum HOM05D000761 ORTHO05D003834 5.1e-10 67.8 47 57.4
Sabra01G0080600 Salix brachista HOM05D000761 ORTHO05D003834 5.1e-10 67.8 45 66.7
CSS0003082 Camellia sinensis var. sinensis HOM05D000761 ORTHO05D003834 6.7e-10 67.4 57 56.1
CAN.G1548.1 Capsicum annuum HOM05D000761 ORTHO05D003834 6.7e-10 67.4 47 61.7
Oeu009179.1 Olea europaea HOM05D000761 ORTHO05D003834 6.7e-10 67.4 52 59.6
MSTRG.25593 Avicennia marina HOM05D000761 ORTHO05D003834 8.8e-10 67.0 45 62.2
CANSAT21G0025 Cannabis sativa HOM05D000761 ORTHO05D003834 8.8e-10 67.0 47 61.7
CiPaw.11G137500 Carya illinoinensis HOM05D000761 ORTHO05D003834 1.1e-09 66.6 49 59.2
Migut.A00785 Erythranthe guttata HOM05D000761 ORTHO05D003834 1.1e-09 66.6 82 43.9
Nn6g33485 Nelumbo nucifera HOM05D000761 ORTHO05D003834 1.1e-09 66.6 60 55.0
Cpa.g.sc202.8 Carica papaya HOM05D000761 ORTHO05D003834 1.5e-09 66.2 63 50.8
Hund11486 Selenicereus undatus HOM05D000761 ORTHO05D003834 1.5e-09 66.2 53 54.7
Solyc12g056300.3 Solanum lycopersicum HOM05D000761 ORTHO05D003834 1.5e-09 66.2 47 59.6
Medtr8g098510 Medicago truncatula HOM05D000761 ORTHO05D003834 2.5e-09 65.5 47 55.3
PSO478G2420 Papaver somniferum HOM05D000761 ORTHO05D003834 2.5e-09 65.5 53 58.5
PSO782G2062 Papaver somniferum HOM05D000761 ORTHO05D003834 2.5e-09 65.5 53 58.5
PGSC0003DMG400004972 Solanum tuberosum HOM05D000761 ORTHO05D003834 2.5e-09 65.5 47 59.6
TPR.G12948 Trifolium pratense HOM05D000761 ORTHO05D003834 2.5e-09 65.5 45 57.8
FAN08G2026 Fragaria x ananassa HOM05D000761 ORTHO05D003834 3.3e-09 65.1 47 57.4
FAN13G0187 Fragaria x ananassa HOM05D000761 ORTHO05D003834 3.3e-09 65.1 47 57.4
Glyma.01G218800 Glycine max HOM05D000761 ORTHO05D003834 3.3e-09 65.1 47 53.2
FAN04G1116 Fragaria x ananassa HOM05D000761 ORTHO05D003834 4.3e-09 64.7 78 41.0
Glyma.11G024700 Glycine max HOM05D000761 ORTHO05D003834 4.3e-09 64.7 47 53.2
Gohir.A03G015700 Gossypium hirsutum HOM05D000761 ORTHO05D003834 4.3e-09 64.7 81 43.2
Sopen12g028850 Solanum pennellii HOM05D000761 ORTHO05D003834 4.3e-09 64.7 47 57.4
CAN.G26.11 Capsicum annuum HOM05D000761 ORTHO05D003834 5.7e-09 64.3 47 55.3
Gohir.D03G152200 Gossypium hirsutum HOM05D000761 ORTHO05D003834 5.7e-09 64.3 81 43.2
Gorai.003G159600 Gossypium raimondii HOM05D000761 ORTHO05D003834 5.7e-09 64.3 81 43.2
Peaxi162Scf01294g00332 Petunia axillaris HOM05D000761 ORTHO05D003834 5.7e-09 64.3 47 57.4
SalBow6G4208 Salvia bowleyana HOM05D000761 ORTHO05D003834 5.7e-09 64.3 58 51.7
CiPaw.12G094700 Carya illinoinensis HOM05D000761 ORTHO05D003834 7.4e-09 63.9 52 57.7
CDE04G2733 Ceratophyllum demersum HOM05D000761 ORTHO05D003834 9.7e-09 63.5 55 54.5
Phvul.002G156600 Phaseolus vulgaris HOM05D000761 ORTHO05D003834 9.7e-09 63.5 47 53.2
TWI60G0369 Tripterygium wilfordii HOM05D000761 ORTHO05D003834 1.3e-08 63.2 87 40.2
Actinidia02017 Actinidia chinensis HOM05D000761 ORTHO05D003834 1.7e-08 62.8 47 61.7
CSS0034934 Camellia sinensis var. sinensis HOM05D000761 ORTHO05D003834 2.2e-08 62.4 45 60.0
CSS0035741 Camellia sinensis var. sinensis HOM05D000761 ORTHO05D003834 2.2e-08 62.4 45 60.0
Aqoxy5G04001 Aquilegia oxysepala HOM05D000761 ORTHO05D003834 2.8e-08 62.0 52 53.8
Glyma.05G206300 Glycine max HOM05D000761 ORTHO05D003834 2.8e-08 62.0 47 53.2
Glyma.08G013200 Glycine max HOM05D000761 ORTHO05D003834 2.8e-08 62.0 47 53.2
LjContig00312_ERROPOS870357g0014846 Lotus japonicus HOM05D000761 ORTHO05D003834 3.7e-08 61.6 45 62.2
Nn1g01473 Nelumbo nucifera HOM05D000761 ORTHO05D003834 3.7e-08 61.6 45 57.8
Oeu011059.1 Olea europaea HOM05D000761 ORTHO05D003834 3.7e-08 61.6 45 60.0
VMungo1215G1984 Vigna mungo HOM05D000761 ORTHO05D003834 3.7e-08 61.6 47 51.1
GSVIVG01019778001 Vitis vinifera HOM05D000761 ORTHO05D003834 4.8e-08 61.2 59 47.5
CDE06G0330 Ceratophyllum demersum HOM05D000761 ORTHO05D003834 8.2e-08 60.5 56 53.6
TWI81G0264 Tripterygium wilfordii HOM05D000761 ORTHO05D003834 8.2e-08 60.5 72 44.4
VMungo0251G0318 Vigna mungo HOM05D000761 ORTHO05D003834 8.2e-08 60.5 47 51.1
Thhalv10027677m.g Eutrema salsugineum HOM05D000761 ORTHO05D003834 1.1e-07 60.1 45 53.3
AL2G11800 Arabidopsis lyrata HOM05D000761 ORTHO05D003834 1.4e-07 59.7 52 50.0
Oeu009072.1 Olea europaea HOM05D000761 ORTHO05D003834 1.4e-07 59.7 56 48.2
Carub.0002s0145 Capsella rubella HOM05D000761 ORTHO05D003834 1.8e-07 59.3 52 50.0
SGA_v2.0_scaffold253G45124 Striga asiatica HOM05D000761 ORTHO05D003834 1.8e-07 59.3 56 46.4
BcaC08g44512 Brassica carinata HOM05D000761 ORTHO05D003834 2.4e-07 58.9 45 51.1
Sp7g00730 Schrenkiella parvula HOM05D000761 ORTHO05D003834 2.4e-07 58.9 59 44.1
SpUn0010_0210 Schrenkiella parvula HOM05D000761 ORTHO05D003834 2.4e-07 58.9 59 44.1
AL7G48250 Arabidopsis lyrata HOM05D000761 ORTHO05D003834 3.1e-07 58.5 59 45.8
AT1G63430 Arabidopsis thaliana HOM05D000761 ORTHO05D003834 3.1e-07 58.5 52 50.0
C06p19640 Brassica napus HOM05D000761 ORTHO05D003834 3.1e-07 58.5 45 51.1
BolC6t37156H Brassica oleracea HOM05D000761 ORTHO05D003834 3.1e-07 58.5 45 51.1
ECA240G1996 Erigeron canadensis HOM05D000761 ORTHO05D003834 3.1e-07 58.5 56 42.9
Lsat_1_v5_gn_6_86861 Lactuca sativa HOM05D000761 ORTHO05D003834 3.1e-07 58.5 56 44.6
SHI07115 Sapria himalayana HOM05D000761 ORTHO05D003834 4.1e-07 58.2 55 52.7
Aa31LG2G750 Aethionema arabicum HOM05D000761 ORTHO05D003834 5.3e-07 57.8 56 50.0
HanXRQChr06g0165661 Helianthus annuus HOM05D000761 ORTHO05D003834 5.3e-07 57.8 47 51.1
BcaB02g07905 Brassica carinata HOM05D000761 ORTHO05D003834 6.9e-07 57.4 45 51.1
Sp2g01180 Schrenkiella parvula HOM05D000761 ORTHO05D003834 6.9e-07 57.4 52 50.0
Lsat_1_v5_gn_3_7860 Lactuca sativa HOM05D000761 ORTHO05D003834 9.1e-07 57.0 58 44.8
THA.LOC104809385 Tarenaya hassleriana HOM05D000761 ORTHO05D003834 9.1e-07 57.0 45 53.3
A09p13640 Brassica napus HOM05D000761 ORTHO05D003834 1.2e-06 56.6 52 46.2
C09p16300 Brassica napus HOM05D000761 ORTHO05D003834 1.2e-06 56.6 52 46.2
BolC9t54541H Brassica oleracea HOM05D000761 ORTHO05D003834 1.2e-06 56.6 52 46.2
BraA09t37017Z Brassica rapa HOM05D000761 ORTHO05D003834 1.2e-06 56.6 52 46.2
Thhalv10023393m.g Eutrema salsugineum HOM05D000761 ORTHO05D003834 1.2e-06 56.6 52 50.0
HanXRQChr07g0187851 Helianthus annuus HOM05D000761 ORTHO05D003834 1.2e-06 56.6 56 42.9
HanXRQChr13g0416191 Helianthus annuus HOM05D000761 ORTHO05D003834 1.2e-06 56.6 56 41.1
THA.LOC104823581 Tarenaya hassleriana HOM05D000761 ORTHO05D003834 1.2e-06 56.6 45 51.1
AT5G41180 Arabidopsis thaliana HOM05D000761 ORTHO05D003834 1.5e-06 56.2 59 42.4
ECA233G4867 Erigeron canadensis HOM05D000761 ORTHO05D003834 1.5e-06 56.2 56 42.9
BcaC02g10393 Brassica carinata HOM05D000761 ORTHO05D003834 2.0e-06 55.8 48 54.2
C04p29430 Brassica napus HOM05D000761 ORTHO05D003834 2.0e-06 55.8 48 54.2
arahy.Tifrunner.gnm1.ann1.3R34Z6 Arachis hypogaea HOM05D000761 ORTHO05D003834 2.6e-06 55.5 45 51.1
arahy.Tifrunner.gnm1.ann1.I232SR Arachis hypogaea HOM05D000761 ORTHO05D003834 2.6e-06 55.5 45 51.1
ATR1126G019 Amborella trichopoda HOM05D000761 ORTHO05D003834 3.4e-06 55.1 45 60.0
Lsat_1_v5_gn_6_6900 Lactuca sativa HOM05D000761 ORTHO05D003834 3.4e-06 55.1 54 42.6
SGA_v2.0_scaffold144G35953 Striga asiatica HOM05D000761 ORTHO05D003834 3.4e-06 55.1 45 53.3
Ah.02g116520 Amaranthus hybridus HOM05D000761 ORTHO05D003834 5.9e-06 54.3 49 55.1
CARHR047920 Cardamine hirsuta HOM05D000761 ORTHO05D003834 5.9e-06 54.3 52 44.2
Lalb_Chr05g0224881 Lupinus albus HOM05D000761 ORTHO05D003834 5.9e-06 54.3 60 38.3
MBI17_g23517_MAGBIO Magnolia biondii HOM05D000761 ORTHO05D003834 5.9e-06 54.3 41 53.7
A07p20700 Brassica napus HOM05D000761 ORTHO05D003834 7.7e-06 53.9 45 46.7
BraA07t29761Z Brassica rapa HOM05D000761 ORTHO05D003834 7.7e-06 53.9 45 44.4
Migut.E01105 Erythranthe guttata HOM05D000761 ORTHO05D003834 7.7e-06 53.9 45 53.3
SGA_v2.0_scaffold385G50470 Striga asiatica HOM05D000761 ORTHO05D003834 7.7e-06 53.9 44 52.3


User provided reference genes

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