Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR622G0811 Trochodendron aralioides HOM05D003853 ORTHO05D004171 7.8e-66 253.8 146 100.0
Cfa008902 Carpinus fangiana HOM05D003853 ORTHO05D004171 2.2e-39 166.0 155 61.3
Haze_11978 Corylus avellana HOM05D003853 ORTHO05D004171 7.7e-37 157.5 166 58.4
CiPaw.05G127700 Carya illinoinensis HOM05D003853 ORTHO05D004171 1.2e-34 150.2 149 59.1
Dinv16707 Davidia involucrata HOM05D003853 ORTHO05D004171 2.7e-34 149.1 144 67.4
Nn4g23335 Nelumbo nucifera HOM05D003853 ORTHO05D004171 2.4e-30 136.0 146 61.0
Thecc.02G335500 Theobroma cacao HOM05D003853 ORTHO05D004171 2.6e-29 132.5 152 59.9
Hma1.2p1_0354F.1_g133590 Hydrangea macrophylla HOM05D003853 ORTHO05D004171 3.4e-29 132.1 154 63.0
Oeu048150.1 Olea europaea HOM05D003853 ORTHO05D004171 6.5e-28 127.9 155 57.4
Duzib251G0928 Durio zibethinus HOM05D003853 ORTHO05D004171 1.4e-27 126.7 156 55.8
Manes.01G030100 Manihot esculenta HOM05D003853 ORTHO05D004171 2.5e-27 125.9 143 61.5
Nitab4.5_0000014g0290 Nicotiana tabacum HOM05D003853 ORTHO05D004171 2.5e-27 125.9 144 54.2
Sc04g0007740 Simmondsia chinensis HOM05D003853 ORTHO05D004171 7.2e-27 124.4 143 53.8
CiPaw.05G127600 Carya illinoinensis HOM05D003853 ORTHO05D004171 1.6e-26 123.2 149 56.4
Lj6P782T102 Lonicera japonica HOM05D003853 ORTHO05D004171 2.1e-26 122.9 149 58.4
Solyc04g005480.1 Solanum lycopersicum HOM05D003853 ORTHO05D004171 6.7e-25 117.9 147 50.3
Sopen04g001500 Solanum pennellii HOM05D003853 ORTHO05D004171 6.7e-25 117.9 148 50.0
Nitab4.5_0002806g0050 Nicotiana tabacum HOM05D003853 ORTHO05D004171 8.8e-25 117.5 147 55.8
TWI75G0276 Tripterygium wilfordii HOM05D003853 ORTHO05D004171 2.6e-24 115.9 141 54.6
Cpa.g.sc1.96 Carica papaya HOM05D003853 ORTHO05D004171 3.3e-24 115.5 121 56.2
ATR0111G024 Amborella trichopoda HOM05D003853 ORTHO05D004171 9.7e-24 114.0 134 52.2
COL.COLO4_27925 Corchorus olitorius HOM05D003853 ORTHO05D004171 1.7e-23 113.2 150 56.7
Eucgr.B03178 Eucalyptus grandis HOM05D003853 ORTHO05D004171 2.8e-23 112.5 165 43.6
Potri.008G093200 Populus trichocarpa HOM05D003853 ORTHO05D004171 2.8e-23 112.5 143 47.6
PGSC0003DMG400035643 Solanum tuberosum HOM05D003853 ORTHO05D004171 2.8e-23 112.5 146 47.9
Ciclev10033000m.g Citrus clementina HOM05D003853 ORTHO05D004171 8.2e-23 110.9 140 49.3
Cpa.g.sc1.97 Carica papaya HOM05D003853 ORTHO05D004171 1.2e-21 107.1 126 54.0
Thecc.02G335600 Theobroma cacao HOM05D003853 ORTHO05D004171 3.4e-21 105.5 133 49.6
Gorai.005G143900 Gossypium raimondii HOM05D003853 ORTHO05D004171 5.9e-21 104.8 133 47.4
Sabra08G0070000 Salix brachista HOM05D003853 ORTHO05D004171 5.9e-21 104.8 143 44.8
QL03p071021 Quercus lobata HOM05D003853 ORTHO05D004171 1.3e-20 103.6 128 52.3
CSS0028215 Camellia sinensis var. sinensis HOM05D003853 ORTHO05D004171 1.7e-20 103.2 167 53.9
Gohir.D02G128200 Gossypium hirsutum HOM05D003853 ORTHO05D004171 1.7e-20 103.2 133 46.6
Sabra10G0122600 Salix brachista HOM05D003853 ORTHO05D004171 1.7e-20 103.2 138 47.8
CsaV3_5G033160 Cucumis sativus L. HOM05D003853 ORTHO05D004171 2.2e-20 102.8 145 49.7
Sabra10G0122700 Salix brachista HOM05D003853 ORTHO05D004171 2.2e-20 102.8 138 47.8
Duzib251G0287 Durio zibethinus HOM05D003853 ORTHO05D004171 2.9e-20 102.4 133 48.1
Peaxi162Scf00930g00051 Petunia axillaris HOM05D003853 ORTHO05D004171 2.9e-20 102.4 120 56.7
Gohir.A03G103000 Gossypium hirsutum HOM05D003853 ORTHO05D004171 8.5e-20 100.9 133 44.4
Cc11_g12330 Coffea canephora HOM05D003853 ORTHO05D004171 1.1e-19 100.5 148 50.0
PGR102G0417 Punica granatum HOM05D003853 ORTHO05D004171 1.1e-19 100.5 144 52.8
PGR102G3239 Punica granatum HOM05D003853 ORTHO05D004171 1.1e-19 100.5 144 52.8
QL03p070993 Quercus lobata HOM05D003853 ORTHO05D004171 1.4e-19 100.1 131 48.9
CSS0045101 Camellia sinensis var. sinensis HOM05D003853 ORTHO05D004171 3.2e-19 99.0 169 52.7
BcaC06g31183 Brassica carinata HOM05D003853 ORTHO05D004171 4.2e-19 98.6 144 42.4
Ah.03g139160 Amaranthus hybridus HOM05D003853 ORTHO05D004171 9.4e-19 97.4 75 62.7
BcaC03g17214 Brassica carinata HOM05D003853 ORTHO05D004171 1.2e-18 97.1 140 45.7
C02p51440 Brassica napus HOM05D003853 ORTHO05D004171 1.2e-18 97.1 140 45.7
BolC2t11232H Brassica oleracea HOM05D003853 ORTHO05D004171 1.2e-18 97.1 140 45.7
Aa31LG2G7160 Aethionema arabicum HOM05D006961 ORTHO05D008809 1.6e-18 96.7 150 48.0
MELO3C012136.2 Cucumis melo HOM05D003853 ORTHO05D004171 1.6e-18 96.7 145 44.1
BraA02t08366Z Brassica rapa HOM05D003853 ORTHO05D004171 2.1e-18 96.3 140 43.6
A02p33450 Brassica napus HOM05D003853 ORTHO05D004171 2.7e-18 95.9 140 44.3
AUR62003133 Chenopodium quinoa HOM05D003853 ORTHO05D004171 2.7e-18 95.9 151 47.7
BcaB07g30301 Brassica carinata HOM05D003853 ORTHO05D004171 4.7e-18 95.1 148 47.3
BcaC06g33998 Brassica carinata HOM05D003853 ORTHO05D004171 4.7e-18 95.1 144 42.4
C07p33870 Brassica napus HOM05D003853 ORTHO05D004171 4.7e-18 95.1 144 42.4
BolC7t43901H Brassica oleracea HOM05D003853 ORTHO05D004171 4.7e-18 95.1 144 42.4
BraA06t27202Z Brassica rapa HOM05D003853 ORTHO05D004171 4.7e-18 95.1 144 42.4
Sp1g12030 Schrenkiella parvula HOM05D003853 ORTHO05D004171 4.7e-18 95.1 140 45.7
A06p43140 Brassica napus HOM05D003853 ORTHO05D004171 6.1e-18 94.7 144 42.4
ClCG05G023860 Citrullus lanatus HOM05D003853 ORTHO05D004171 6.1e-18 94.7 141 48.2
COL.COLO4_27926 Corchorus olitorius HOM05D003853 ORTHO05D004171 6.1e-18 94.7 138 44.9
Sed0005785 Sechium edule HOM05D003853 ORTHO05D004171 8.0e-18 94.4 158 43.7
MSTRG.7763 Avicennia marina HOM05D003853 ORTHO05D004171 3.0e-17 92.4 139 43.9
Rhsim03G0019300 Rhododendron simsii HOM05D003853 ORTHO05D004171 3.0e-17 92.4 162 42.6
AL5G13190 Arabidopsis lyrata HOM05D003853 ORTHO05D004171 3.9e-17 92.0 156 42.3
Potri.010G161200 Populus trichocarpa HOM05D003853 ORTHO05D004171 3.9e-17 92.0 144 43.1
Sp2g14360 Schrenkiella parvula HOM05D003853 ORTHO05D004171 3.9e-17 92.0 166 40.4
CARHR145780 Cardamine hirsuta HOM05D003853 ORTHO05D004171 6.7e-17 91.3 149 46.3
AT2G03440 Arabidopsis thaliana HOM05D003853 ORTHO05D004171 8.8e-17 90.9 133 43.6
CDE02G2907 Ceratophyllum demersum HOM05D003853 ORTHO05D004171 8.8e-17 90.9 74 62.2
AL1G25770 Arabidopsis lyrata HOM05D003853 ORTHO05D004171 1.1e-16 90.5 142 48.6
CDE02G1866 Ceratophyllum demersum HOM05D003853 ORTHO05D004171 1.5e-16 90.1 128 48.4
Peaxi162Scf00314g00022 Petunia axillaris HOM05D003853 ORTHO05D004171 2.0e-16 89.7 73 64.4
BraA08t35142Z Brassica rapa HOM05D003853 ORTHO05D004171 2.6e-16 89.4 142 47.2
Thhalv10004968m.g Eutrema salsugineum HOM05D003853 ORTHO05D004171 2.6e-16 89.4 150 46.0
SGA_v2.0_scaffold16G07759 Striga asiatica HOM05D003853 ORTHO05D004171 2.6e-16 89.4 139 42.4
vmacro22356 Vaccinium macrocarpon HOM05D003853 ORTHO05D004171 3.3e-16 89.0 161 47.2
BcaC07g38709 Brassica carinata HOM05D003853 ORTHO05D004171 4.4e-16 88.6 140 46.4
BolC8t49263H Brassica oleracea HOM05D003853 ORTHO05D004171 4.4e-16 88.6 145 47.6
Thhalv10008975m.g Eutrema salsugineum HOM05D003853 ORTHO05D004171 4.4e-16 88.6 140 45.7
Ah.03g139150 Amaranthus hybridus HOM05D003853 ORTHO05D004171 5.7e-16 88.2 126 46.8
BcaB03g13120 Brassica carinata HOM05D003853 ORTHO05D004171 7.4e-16 87.8 144 47.9
Migut.E00060 Erythranthe guttata HOM05D003853 ORTHO05D004171 9.7e-16 87.4 149 43.6
QL03p070977 Quercus lobata HOM05D003853 ORTHO05D004171 1.3e-15 87.0 131 48.9
CARHR014300 Cardamine hirsuta HOM05D003853 ORTHO05D004171 1.7e-15 86.7 140 44.3
BcaB03g13123 Brassica carinata HOM05D003853 ORTHO05D004171 2.2e-15 86.3 88 55.7
Carub.0005s0241 Capsella rubella HOM05D003853 ORTHO05D004171 2.2e-15 86.3 162 38.3
AUR62007952 Chenopodium quinoa HOM05D003853 ORTHO05D004171 2.2e-15 86.3 102 55.9
QL03p071009 Quercus lobata HOM05D003853 ORTHO05D004171 2.2e-15 86.3 128 50.0
Actinidia12318 Actinidia chinensis HOM05D003853 ORTHO05D004171 2.8e-15 85.9 114 48.2
C08p16390 Brassica napus HOM05D003853 ORTHO05D004171 2.8e-15 85.9 89 53.9
AUR62003132 Chenopodium quinoa HOM05D003853 ORTHO05D004171 6.3e-15 84.7 134 49.3
Manes.01G030000 Manihot esculenta HOM05D003853 ORTHO05D004171 6.3e-15 84.7 89 50.6
SGA_v2.0_scaffold36G14434 Striga asiatica HOM05D003853 ORTHO05D004171 6.3e-15 84.7 84 57.1
vmacro22355 Vaccinium macrocarpon HOM05D003853 ORTHO05D004171 6.3e-15 84.7 133 45.1
Aa31LG4G16180 Aethionema arabicum HOM05D003853 ORTHO05D004171 1.8e-14 83.2 98 49.0
Nitab4.5_0000334g0290 Nicotiana tabacum HOM05D003853 ORTHO05D004171 1.8e-14 83.2 165 36.4
PSO017G6890 Papaver somniferum HOM05D003853 ORTHO05D004171 1.8e-14 83.2 145 51.7
Carub.0001s1363 Capsella rubella HOM05D003853 ORTHO05D004171 2.4e-14 82.8 90 52.2
AT1G13930 Arabidopsis thaliana HOM05D003853 ORTHO05D004171 3.1e-14 82.4 140 46.4
SGA_v2.0_scaffold287G47154 Striga asiatica HOM05D003853 ORTHO05D004171 4.1e-14 82.0 97 46.4
MBI16_g00500_MAGBIO Magnolia biondii HOM05D003853 ORTHO05D004171 5.3e-14 81.6 139 50.4
Sed0019389 Sechium edule HOM05D003853 ORTHO05D004171 7.0e-14 81.3 138 46.4
MSTRG.2322 Avicennia marina HOM05D003853 ORTHO05D004171 1.6e-13 80.1 105 45.7
Lalb_Chr05g0215091 Lupinus albus HOM05D003853 ORTHO05D004171 2.6e-13 79.3 69 62.3
Sopen05g007400 Solanum pennellii HOM05D003853 ORTHO05D004171 2.6e-13 79.3 86 54.7
A08p32180 Brassica napus HOM05D003853 ORTHO05D004171 3.5e-13 79.0 124 49.2
DCAR_027453 Daucus carota HOM05D003853 ORTHO05D004171 3.5e-13 79.0 143 43.4
Ah.02g126530 Amaranthus hybridus HOM05D003853 ORTHO05D004171 5.9e-13 78.2 72 58.3
Glyma.07G226567 Glycine max HOM05D003853 ORTHO05D004171 5.9e-13 78.2 141 41.1
Glyma.07G226633 Glycine max HOM05D003853 ORTHO05D004171 5.9e-13 78.2 141 41.1
unitig_699.g19910 Utricularia gibba HOM05D003853 ORTHO05D004171 5.9e-13 78.2 72 56.9
Sc04g0007730 Simmondsia chinensis HOM05D003853 ORTHO05D004171 7.7e-13 77.8 136 44.9
BcaC07g38710 Brassica carinata HOM05D003853 ORTHO05D004171 1.0e-12 77.4 87 52.9
C08p16400 Brassica napus HOM05D003853 ORTHO05D004171 1.0e-12 77.4 87 52.9
BolC8t49264H Brassica oleracea HOM05D003853 ORTHO05D004171 1.0e-12 77.4 87 52.9
SEGI_33923 Sequoiadendron giganteum HOM05D003853 ORTHO05D004171 1.0e-12 77.4 139 41.0
Phvul.002G168000 Phaseolus vulgaris HOM05D003853 ORTHO05D004171 1.7e-12 76.6 71 56.3
Actinidia28167 Actinidia chinensis HOM05D003853 ORTHO05D004171 2.9e-12 75.9 85 52.9
vmacro22354 Vaccinium macrocarpon HOM05D003853 ORTHO05D004171 2.9e-12 75.9 82 53.7
Ah.03g139140 Amaranthus hybridus HOM05D003853 ORTHO05D004171 3.8e-12 75.5 80 52.5
HPP92_023639 Vanilla planifolia HOM05D003853 ORTHO05D004171 3.8e-12 75.5 139 36.7
ECA234G0349 Erigeron canadensis HOM05D003853 ORTHO05D004171 6.5e-12 74.7 71 54.9
Glyma.20G027200 Glycine max HOM05D003853 ORTHO05D004171 6.5e-12 74.7 79 55.7
MSTRG.735 Avicennia marina HOM05D003853 ORTHO05D004171 1.1e-11 73.9 70 58.6
PSO478G4998 Papaver somniferum HOM05D003853 ORTHO05D004171 1.1e-11 73.9 146 49.3
Psat7g135200 Pisum sativum HOM05D003853 ORTHO05D004171 1.1e-11 73.9 147 39.5
Lsat_1_v5_gn_4_11980 Lactuca sativa HOM05D003853 ORTHO05D004171 1.5e-11 73.6 85 48.2
Psat2g127960 Pisum sativum HOM05D003853 ORTHO05D004171 1.5e-11 73.6 136 44.1
Ca_04944_v3 Cicer arietinum L. HOM05D003853 ORTHO05D004171 1.9e-11 73.2 121 42.1
Lj4g0005239 Lotus japonicus HOM05D003853 ORTHO05D004171 1.9e-11 73.2 145 39.3
VMungo0251G2653 Vigna mungo HOM05D003853 ORTHO05D004171 1.9e-11 73.2 84 50.0
AUR62003131 Chenopodium quinoa HOM05D003853 ORTHO05D004171 2.5e-11 72.8 78 52.6
Medtr4g082830 Medicago truncatula HOM05D003853 ORTHO05D004171 2.5e-11 72.8 92 50.0
MD13G1065700 Malus domestica HOM05D003853 ORTHO05D004171 3.2e-11 72.4 178 42.1
SalBow2G1698 Salvia bowleyana HOM05D003853 ORTHO05D004171 4.2e-11 72.0 142 42.3
PGSC0003DMG400028384 Solanum tuberosum HOM05D003853 ORTHO05D004171 4.2e-11 72.0 78 52.6
AUR62007951 Chenopodium quinoa HOM05D003853 ORTHO05D004171 7.2e-11 71.2 130 40.8
Nitab4.5_0015741g0010 Nicotiana tabacum HOM05D003853 ORTHO05D004171 7.2e-11 71.2 157 35.7
Zm00001eb007060 Zea mays HOM05D003853 ORTHO05D004171 7.2e-11 71.2 119 41.2
Prupe.1G282500 Prunus persica HOM05D003853 ORTHO05D004171 9.4e-11 70.9 131 43.5
HPP92_023625 Vanilla planifolia HOM05D003853 ORTHO05D004171 9.4e-11 70.9 139 36.0
CANSAT64G1198 Cannabis sativa HOM05D003853 ORTHO05D004171 1.6e-10 70.1 115 46.1
FAN17G1589 Fragaria x ananassa HOM05D003853 ORTHO05D004171 2.1e-10 69.7 130 42.3
Solyc05g012570.3 Solanum lycopersicum HOM05D003853 ORTHO05D004171 2.1e-10 69.7 83 48.2
Migut.L01216 Erythranthe guttata HOM05D003853 ORTHO05D004171 2.7e-10 69.3 145 35.2
SEGI_07999 Sequoiadendron giganteum HOM05D003853 ORTHO05D004171 2.7e-10 69.3 75 48.0
Ca_18813_v3 Cicer arietinum L. HOM05D003853 ORTHO05D004171 3.6e-10 68.9 127 46.5
A08p32170 Brassica napus HOM05D003853 ORTHO05D004171 4.7e-10 68.6 71 49.3
ECA246G1290 Erigeron canadensis HOM05D003853 ORTHO05D004171 4.7e-10 68.6 81 46.9
BraA08t35141Z Brassica rapa HOM05D003853 ORTHO05D004171 6.1e-10 68.2 86 44.2
CAN.G1340.8 Capsicum annuum HOM05D003853 ORTHO05D004171 8.0e-10 67.8 156 34.0
FAN12G3704 Fragaria x ananassa HOM05D002141 ORTHO05D002119 8.0e-10 67.8 130 40.0
MD16G1064200 Malus domestica HOM05D003853 ORTHO05D004171 8.0e-10 67.8 73 52.1
Sopen05g007410 Solanum pennellii HOM05D003853 ORTHO05D004171 8.0e-10 67.8 126 40.5
Lalb_Chr17g0341041 Lupinus albus HOM05D003853 ORTHO05D004171 1.0e-09 67.4 96 43.8
Medtr5g043660 Medicago truncatula HOM05D003853 ORTHO05D004171 1.8e-09 66.6 137 38.7
TPR.G2267 Trifolium pratense HOM05D003853 ORTHO05D004171 1.8e-09 66.6 146 45.2
SalBow2G1975 Salvia bowleyana HOM05D003853 ORTHO05D004171 4.0e-09 65.5 135 40.7
Psat7g135240 Pisum sativum HOM05D003853 ORTHO05D004171 8.8e-09 64.3 127 43.3
HanXRQChr10g0308121 Helianthus annuus HOM05D003853 ORTHO05D004171 1.5e-08 63.5 153 33.3
THA.LOC104805946 Tarenaya hassleriana HOM05D003853 ORTHO05D004171 1.5e-08 63.5 90 44.4
vmacro22463 Vaccinium macrocarpon HOM05D003853 ORTHO05D004171 2.0e-08 63.2 71 54.9
Lsat_1_v5_gn_3_56161 Lactuca sativa HOM05D003853 ORTHO05D004171 2.6e-08 62.8 87 42.5
Peaxi162Scf00314g00031 Petunia axillaris HOM05D003853 ORTHO05D004171 2.6e-08 62.8 83 45.8
Lj2g0020869 Lotus japonicus HOM05D003853 ORTHO05D004171 1.3e-07 60.5 141 38.3
Zm00001eb334140 Zea mays HOM05D003853 ORTHO05D004171 1.3e-07 60.5 74 45.9
HanXRQChr15g0477051 Helianthus annuus HOM05D003853 ORTHO05D004171 1.7e-07 60.1 90 46.7
Medtr4g082860 Medicago truncatula HOM05D003853 ORTHO05D004171 2.2e-07 59.7 125 40.0
ATR0579G128 Amborella trichopoda HOM05D003853 ORTHO05D004171 3.7e-07 58.9 68 48.5
Os10g0330000 Oryza sativa ssp. japonica HOM05D003853 ORTHO05D004171 6.3e-07 58.2 76 42.1
TPR.G34052 Trifolium pratense HOM05D003853 ORTHO05D004171 1.1e-06 57.4 125 36.0
CDE02G3795 Ceratophyllum demersum HOM05D003853 ORTHO05D004171 1.4e-06 57.0 60 51.7
TPR.G34063 Trifolium pratense HOM05D003853 ORTHO05D004171 1.8e-06 56.6 66 48.5
FAN07G0344 Fragaria x ananassa HOM05D002141 ORTHO05D002119 3.1e-06 55.8 58 53.4
TPR.G24450 Trifolium pratense HOM05D003853 ORTHO05D004171 4.1e-06 55.5 130 38.5


User provided reference genes

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