Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR622G0675 Trochodendron aralioides HOM05D004568 ORTHO05D005343 2.2e-143 512.7 350 100.0
TAR374G1393 Trochodendron aralioides HOM05D004568 ORTHO05D005343 2.3e-79 300.1 373 50.7
Nn3g17622 Nelumbo nucifera HOM05D004568 ORTHO05D005343 1.9e-57 227.3 351 41.9
Duzib168G1705 Durio zibethinus HOM05D004568 ORTHO05D005343 3.8e-50 203.0 398 42.2
Thecc.09G210800 Theobroma cacao HOM05D004568 ORTHO05D005343 3.8e-50 203.0 395 42.0
QL03p044380 Quercus lobata HOM05D004568 ORTHO05D005343 2.5e-49 200.3 392 37.8
Aqoxy3G03818 Aquilegia oxysepala HOM05D004568 ORTHO05D005343 9.4e-49 198.4 381 43.0
MD16G1057700 Malus domestica HOM05D004568 ORTHO05D005343 1.0e-47 194.9 394 39.8
PSO063G5818 Papaver somniferum HOM05D004568 ORTHO05D005343 1.0e-47 194.9 390 44.1
MD13G1052200 Malus domestica HOM05D004568 ORTHO05D005343 1.4e-47 194.5 376 39.1
CiPaw.05G118300 Carya illinoinensis HOM05D004568 ORTHO05D005343 6.7e-47 192.2 390 39.2
Cfa008803 Carpinus fangiana HOM05D004568 ORTHO05D005343 8.8e-47 191.8 381 37.8
Ciclev10033580m.g Citrus clementina HOM05D004568 ORTHO05D005343 5.7e-46 189.1 410 43.4
TWI75G0122 Tripterygium wilfordii HOM05D004568 ORTHO05D005343 2.8e-45 186.8 392 35.5
PSO782G5402 Papaver somniferum HOM05D004568 ORTHO05D005343 4.8e-45 186.0 383 42.8
TWI79G0507 Tripterygium wilfordii HOM05D004568 ORTHO05D005343 8.2e-45 185.3 392 34.2
Prupe.1G299900 Prunus persica HOM05D004568 ORTHO05D005343 1.4e-44 184.5 418 38.3
CSS0002717 Camellia sinensis var. sinensis HOM05D004568 ORTHO05D005343 1.8e-44 184.1 359 42.3
CiPaw.06G097400 Carya illinoinensis HOM05D004568 ORTHO05D005343 1.8e-44 184.1 397 39.8
Hma1.2p1_1424F.1_g282720 Hydrangea macrophylla HOM05D004568 ORTHO05D005343 5.9e-43 179.1 361 37.1
Dinv16554 Davidia involucrata HOM05D004568 ORTHO05D005343 1.3e-42 177.9 343 42.3
VMungo1215G2036 Vigna mungo HOM05D004568 ORTHO05D005343 1.3e-42 177.9 402 37.3
FAN07G0048 Fragaria x ananassa HOM05D004568 ORTHO05D005343 2.2e-42 177.2 412 39.8
Lalb_Chr10g0099511 Lupinus albus HOM05D004568 ORTHO05D005343 2.9e-42 176.8 381 37.8
FAN17G1809 Fragaria x ananassa HOM05D004568 ORTHO05D005343 3.8e-42 176.4 419 38.9
Hma1.2p1_1459F.1_g284900 Hydrangea macrophylla HOM05D004568 ORTHO05D005343 5.0e-42 176.0 369 36.9
ClCG05G023290 Citrullus lanatus HOM05D004568 ORTHO05D005343 8.5e-42 175.3 393 40.2
MELO3C012188.2 Cucumis melo HOM05D004568 ORTHO05D005343 8.5e-42 175.3 393 40.2
CsaV3_5G033720 Cucumis sativus L. HOM05D004568 ORTHO05D005343 8.5e-42 175.3 397 39.8
Atru.chr11.1442 Acer truncatum HOM05D004568 ORTHO05D005343 1.1e-41 174.9 407 33.9
Atru.chr11.1472 Acer truncatum HOM05D004568 ORTHO05D005343 1.1e-41 174.9 407 33.9
FAN22G1274 Fragaria x ananassa HOM05D004568 ORTHO05D005343 1.9e-41 174.1 420 39.0
Duzib268G1242 Durio zibethinus HOM05D004568 ORTHO05D005343 3.2e-41 173.3 373 40.2
Thecc.02G315200 Theobroma cacao HOM05D004568 ORTHO05D005343 3.2e-41 173.3 378 33.9
CANSAT64G0418 Cannabis sativa HOM05D004568 ORTHO05D005343 4.2e-41 172.9 422 33.6
FvH4_4g28580 Fragaria vesca HOM05D004568 ORTHO05D005343 5.5e-41 172.6 413 39.0
RcHm_v2.0_Chr4g0436671 Rosa chinensis HOM05D004568 ORTHO05D005343 7.2e-41 172.2 410 39.0
Sabra10G0102200 Salix brachista HOM05D004568 ORTHO05D005343 1.6e-40 171.0 403 38.2
Duzib251G0342 Durio zibethinus HOM05D004568 ORTHO05D005343 2.1e-40 170.6 393 39.2
FAN12G0798 Fragaria x ananassa HOM05D004568 ORTHO05D005343 2.1e-40 170.6 409 39.4
Potri.010G133600 Populus trichocarpa HOM05D004568 ORTHO05D005343 2.1e-40 170.6 390 39.7
GSVIVG01012027001 Vitis vinifera HOM05D004568 ORTHO05D005343 2.1e-40 170.6 248 44.4
Potri.008G109600 Populus trichocarpa HOM05D004568 ORTHO05D005343 6.1e-40 169.1 402 37.6
Potri.T062072 Populus trichocarpa HOM05D004568 ORTHO05D005343 1.8e-39 167.5 402 37.3
COL.COLO4_34999 Corchorus olitorius HOM05D004568 ORTHO05D005343 3.0e-39 166.8 404 35.4
Lj2g0022626 Lotus japonicus HOM05D004568 ORTHO05D005343 3.9e-39 166.4 399 34.6
Lsat_1_v5_gn_3_58841 Lactuca sativa HOM05D004568 ORTHO05D005343 7.4e-38 162.2 376 42.6
TPR.G2653 Trifolium pratense HOM05D004568 ORTHO05D005343 7.4e-38 162.2 402 39.1
Ca_05120_v3 Cicer arietinum L. HOM05D004568 ORTHO05D005343 9.7e-38 161.8 402 41.0
Oeu033529.1 Olea europaea HOM05D004568 ORTHO05D005343 9.7e-38 161.8 350 36.9
Cpa.g.sc1.257 Carica papaya HOM05D004568 ORTHO05D005343 3.7e-37 159.8 414 34.1
DCAR_026699 Daucus carota HOM05D004568 ORTHO05D005343 1.1e-36 158.3 366 38.3
Sed0022479 Sechium edule HOM05D004568 ORTHO05D005343 5.3e-36 156.0 388 34.0
Rhsim09G0116400 Rhododendron simsii HOM05D004568 ORTHO05D005343 5.9e-35 152.5 357 41.7
Manes.14G094400 Manihot esculenta HOM05D004568 ORTHO05D005343 1.7e-34 151.0 392 32.9
Rhsim09G0116100 Rhododendron simsii HOM05D004568 ORTHO05D005343 2.2e-34 150.6 364 39.6
Manes.06G076600 Manihot esculenta HOM05D004568 ORTHO05D005343 2.9e-34 150.2 393 32.6
Sc04g0007050 Simmondsia chinensis HOM05D004568 ORTHO05D005343 5.0e-34 149.4 376 33.0
COL.COLO4_27716 Corchorus olitorius HOM05D004568 ORTHO05D005343 1.1e-33 148.3 402 34.1
Gorai.005G149300 Gossypium raimondii HOM05D004568 ORTHO05D005343 1.1e-33 148.3 398 38.9
Gohir.A03G108200 Gossypium hirsutum HOM05D004568 ORTHO05D005343 1.5e-33 147.9 398 37.9
CSS0045744 Camellia sinensis var. sinensis HOM05D004568 ORTHO05D005343 4.2e-33 146.4 360 33.9
ECA246G3306 Erigeron canadensis HOM05D004568 ORTHO05D005343 9.4e-33 145.2 368 42.4
Gohir.D02G133400 Gossypium hirsutum HOM05D004568 ORTHO05D005343 1.6e-32 144.4 399 38.8
HanXRQChr12g0365221 Helianthus annuus HOM05D004568 ORTHO05D005343 1.6e-32 144.4 376 37.0
PGR119G0824 Punica granatum HOM05D004568 ORTHO05D005343 2.1e-32 144.1 435 35.4
Dinv27412 Davidia involucrata HOM05D006650 ORTHO05D008401 8.0e-32 142.1 296 37.2
Gohir.A12G157850 Gossypium hirsutum HOM05D004568 ORTHO05D005343 2.3e-31 140.6 359 32.3
Gohir.A12G157951 Gossypium hirsutum HOM05D004568 ORTHO05D005343 2.3e-31 140.6 359 32.3
Sabra08G0083400 Salix brachista HOM05D004568 ORTHO05D005343 3.0e-31 140.2 366 33.9
Medtr6g472100 Medicago truncatula HOM05D004568 ORTHO05D005343 4.0e-31 139.8 366 39.1
Peaxi162Scf00208g00131 Petunia axillaris HOM05D004568 ORTHO05D005343 6.8e-31 139.0 373 30.0
Glyma.02G128700 Glycine max HOM05D004568 ORTHO05D005343 8.8e-31 138.7 422 33.6
Nitab4.5_0001554g0060 Nicotiana tabacum HOM05D004568 ORTHO05D005343 2.6e-30 137.1 378 33.6
Phvul.003G034500 Phaseolus vulgaris HOM05D004568 ORTHO05D005343 4.4e-30 136.3 328 33.2
Migut.L01125 Erythranthe guttata HOM05D004568 ORTHO05D005343 9.7e-30 135.2 363 35.5
Nitab4.5_0004681g0010 Nicotiana tabacum HOM05D004568 ORTHO05D005343 1.3e-29 134.8 379 33.0
Gohir.D12G160800 Gossypium hirsutum HOM05D004568 ORTHO05D005343 2.8e-29 133.7 359 31.8
SalBow8G3235 Salvia bowleyana HOM05D004568 ORTHO05D005343 4.8e-29 132.9 370 30.0
SalBow8G5572 Salvia bowleyana HOM05D004568 ORTHO05D005343 4.8e-29 132.9 370 30.0
HanXRQChr17g0551111 Helianthus annuus HOM05D004568 ORTHO05D005343 8.3e-29 132.1 362 41.4
HanXRQChr17g0551511 Helianthus annuus HOM05D004568 ORTHO05D005343 8.3e-29 132.1 362 41.4
Gohir.A13G213600 Gossypium hirsutum HOM05D004568 ORTHO05D005343 1.8e-28 131.0 375 37.9
TWI31G1373 Tripterygium wilfordii HOM05D004568 ORTHO05D005343 1.8e-28 131.0 353 31.2
Gohir.D13G217400 Gossypium hirsutum HOM05D004568 ORTHO05D005343 5.3e-28 129.4 375 34.7
Gorai.013G247900 Gossypium raimondii HOM05D004568 ORTHO05D005343 5.3e-28 129.4 375 34.7
Psat2g096280 Pisum sativum HOM05D004568 ORTHO05D005343 5.3e-28 129.4 377 39.0
Glyma.04G152800 Glycine max HOM05D004568 ORTHO05D005343 4.5e-27 126.3 425 33.4
DCAR_030135 Daucus carota HOM05D004568 ORTHO05D005343 7.7e-27 125.6 363 33.3
Eucgr.G02393 Eucalyptus grandis HOM05D004568 ORTHO05D005343 1.0e-26 125.2 242 44.6
Cc11_g11080 Coffea canephora HOM05D004568 ORTHO05D005343 1.7e-26 124.4 162 61.1
Lsat_1_v5_gn_8_37860 Lactuca sativa HOM05D004568 ORTHO05D005343 1.7e-26 124.4 363 39.9
Solyc04g005920.1 Solanum lycopersicum HOM05D004568 ORTHO05D005343 1.7e-26 124.4 246 39.4
Gorai.008G173800 Gossypium raimondii HOM05D004568 ORTHO05D005343 6.5e-26 122.5 351 35.0
Sopen04g001970 Solanum pennellii HOM05D004568 ORTHO05D005343 1.5e-25 121.3 246 39.4
THA.LOC104824044 Tarenaya hassleriana HOM05D004568 ORTHO05D005343 2.5e-25 120.6 249 46.6
PGSC0003DMG400002843 Solanum tuberosum HOM05D004568 ORTHO05D005343 3.6e-24 116.7 246 39.4
HanXRQChr08g0214641 Helianthus annuus HOM05D004568 ORTHO05D005343 8.0e-24 115.5 355 35.2
HanXRQChr08g0214671 Helianthus annuus HOM05D004568 ORTHO05D005343 8.0e-24 115.5 355 35.2
THA.LOC104805234 Tarenaya hassleriana HOM05D004568 ORTHO05D005343 8.0e-24 115.5 244 44.7
CDE04G2972 Ceratophyllum demersum HOM05D004568 ORTHO05D005343 1.4e-20 104.8 198 36.9
AUR62039200 Chenopodium quinoa HOM05D004568 ORTHO05D005343 5.4e-20 102.8 387 27.1
Haze_11819 Corylus avellana HOM05D004568 ORTHO05D005343 5.9e-19 99.4 102 55.9
AUR62019434 Chenopodium quinoa HOM05D000052 ORTHO05D000046 3.8e-18 96.7 265 33.2
Actinidia37881 Actinidia chinensis HOM05D004568 ORTHO05D005343 8.6e-18 95.5 245 34.3
SGA_v2.0_scaffold36G14507 Striga asiatica HOM05D004568 ORTHO05D005343 1.5e-17 94.7 240 32.5
EL10Ac6g14584 Beta vulgaris HOM05D004568 ORTHO05D005343 2.5e-17 94.0 354 28.0
PGSC0003DMG400007516 Solanum tuberosum HOM05D004568 ORTHO05D005343 3.3e-17 93.6 197 39.1
AUR62007782 Chenopodium quinoa HOM05D004568 ORTHO05D005343 1.2e-16 91.7 389 27.5
Solyc05g010450.1 Solanum lycopersicum HOM05D004568 ORTHO05D005343 1.2e-16 91.7 205 35.1
Sopen05g006240 Solanum pennellii HOM05D004568 ORTHO05D005343 1.2e-16 91.7 205 35.1
SGA_v2.0_scaffold16G07859 Striga asiatica HOM05D004568 ORTHO05D005343 2.1e-16 90.9 249 31.3
Thhalv10004268m.g Eutrema salsugineum HOM05D004568 ORTHO05D005343 2.8e-16 90.5 257 41.2
Aa31LG2G6720 Aethionema arabicum HOM05D004568 ORTHO05D005343 8.0e-16 89.0 265 38.5
Actinidia30170 Actinidia chinensis HOM05D004568 ORTHO05D005343 1.4e-15 88.2 104 70.2
unitig_747.g21193 Utricularia gibba HOM05D004568 ORTHO05D005343 4.0e-15 86.7 192 35.4
AT3G25590 Arabidopsis thaliana HOM05D004568 ORTHO05D005343 6.8e-15 85.9 263 33.5
Sp2g14860 Schrenkiella parvula HOM05D004568 ORTHO05D005343 1.2e-14 85.1 269 40.5
arahy.Tifrunner.gnm1.ann1.35X7C5 Arachis hypogaea HOM05D004568 ORTHO05D005343 2.6e-14 84.0 276 30.8
vmacro10495 Vaccinium macrocarpon HOM05D004568 ORTHO05D005343 4.4e-14 83.2 354 33.1
BolC2t11302H Brassica oleracea HOM05D004568 ORTHO05D005343 5.7e-14 82.8 257 32.7
Nitab4.5_0012448g0010 Nicotiana tabacum HOM05D004568 ORTHO05D005343 7.5e-14 82.4 148 39.9
AL5G14100 Arabidopsis lyrata HOM05D004568 ORTHO05D005343 2.8e-13 80.5 263 38.4
arahy.Tifrunner.gnm1.ann1.Y3DNXR Arachis hypogaea HOM05D004568 ORTHO05D005343 2.8e-13 80.5 276 33.0
Ah.04g164810 Amaranthus hybridus HOM05D004568 ORTHO05D005343 1.1e-12 78.6 348 26.1
Carub.0005s0337 Capsella rubella HOM05D004568 ORTHO05D005343 1.1e-12 78.6 243 42.0
Haze_11818 Corylus avellana HOM05D004568 ORTHO05D005343 1.1e-12 78.6 233 29.2
BraA02t08408Z Brassica rapa HOM05D004568 ORTHO05D005343 2.4e-12 77.4 251 39.8
BraA06t27185Z Brassica rapa HOM05D004568 ORTHO05D005343 3.2e-12 77.0 211 35.1
A02p33910 Brassica napus HOM05D004568 ORTHO05D005343 9.2e-12 75.5 251 39.0
A06p42720 Brassica napus HOM05D004568 ORTHO05D005343 1.6e-11 74.7 211 34.6
BcaC03g17273 Brassica carinata HOM05D004568 ORTHO05D005343 3.5e-11 73.6 248 31.0
BcaC06g33977 Brassica carinata HOM05D004568 ORTHO05D005343 7.8e-11 72.4 213 33.8
C07p34410 Brassica napus HOM05D004568 ORTHO05D005343 7.8e-11 72.4 213 33.8
BolC7t43969H Brassica oleracea HOM05D004568 ORTHO05D005343 7.8e-11 72.4 213 33.8
A09p24900 Brassica napus HOM05D004568 ORTHO05D005343 5.0e-10 69.7 353 27.2
C02p52170 Brassica napus HOM05D004568 ORTHO05D005343 5.0e-10 69.7 248 30.6
BraA09t38078Z Brassica rapa HOM05D004568 ORTHO05D005343 5.0e-10 69.7 207 32.4
BcaC06g31131 Brassica carinata HOM05D004568 ORTHO05D005343 1.5e-09 68.2 259 39.8
ECA233G1390 Erigeron canadensis HOM05D004568 ORTHO05D005343 1.5e-09 68.2 287 27.2
BolC9t56047H Brassica oleracea HOM05D004568 ORTHO05D005343 4.3e-09 66.6 204 35.8
BcaC04g21427 Brassica carinata HOM05D004568 ORTHO05D005343 9.5e-09 65.5 204 31.9
BcaC04g21428 Brassica carinata HOM05D004568 ORTHO05D005343 1.2e-08 65.1 194 32.5
C09p31920 Brassica napus HOM05D004568 ORTHO05D005343 1.2e-08 65.1 204 35.3
BcaB07g30637 Brassica carinata HOM05D004568 ORTHO05D005343 2.1e-08 64.3 249 36.9
CDE04G2720 Ceratophyllum demersum HOM05D004568 ORTHO05D005343 2.3e-07 60.8 130 42.3
unitig_26.g10277 Utricularia gibba HOM05D004568 ORTHO05D005343 1.2e-06 58.5 186 30.1
Lj3P1023T52 Lonicera japonica HOM05D004568 ORTHO05D005343 2.0e-06 57.8 197 31.0
SEGI_17788 Sequoiadendron giganteum HOM05D004568 ORTHO05D005343 4.4e-06 56.6 103 36.9


User provided reference genes

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