Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR622G0622 Trochodendron aralioides HOM05D007067 ORTHO05D008864 9.1e-107 390.2 189 100.0
CSS0040643 Camellia sinensis var. sinensis HOM05D007067 ORTHO05D008864 8.0e-87 323.9 189 84.1
Nn3g17293 Nelumbo nucifera HOM05D007067 ORTHO05D008864 1.8e-86 322.8 189 82.5
GSVIVG01004672001 Vitis vinifera HOM05D007067 ORTHO05D008864 5.4e-83 311.2 182 80.2
GSVIVG01005334001 Vitis vinifera HOM05D007067 ORTHO05D008864 5.4e-83 311.2 182 80.2
MBI02_g12272_MAGBIO Magnolia biondii HOM05D007067 ORTHO05D008864 1.3e-81 306.6 185 77.3
Rhsim08G0153200 Rhododendron simsii HOM05D007067 ORTHO05D008864 1.2e-79 300.1 189 78.3
vmacro17532 Vaccinium macrocarpon HOM05D007067 ORTHO05D008864 1.4e-78 296.6 186 76.3
Cc04_g16320 Coffea canephora HOM05D007067 ORTHO05D008864 4.0e-78 295.0 189 75.7
Nitab4.5_0003381g0030 Nicotiana tabacum HOM05D007067 ORTHO05D008864 2.2e-76 289.3 189 76.2
Actinidia04879 Actinidia chinensis HOM05D007067 ORTHO05D008864 7.0e-75 284.3 184 75.0
Manes.06G091000 Manihot esculenta HOM05D007067 ORTHO05D008864 7.0e-75 284.3 183 74.9
Nitab4.5_0005226g0040 Nicotiana tabacum HOM05D007067 ORTHO05D008864 9.2e-75 283.9 189 75.1
CAN.G846.12 Capsicum annuum HOM05D007067 ORTHO05D008864 1.2e-74 283.5 189 75.1
FAN13G0188 Fragaria x ananassa HOM05D007067 ORTHO05D008864 1.7e-73 279.6 193 73.6
Cfa018925 Carpinus fangiana HOM05D007067 ORTHO05D008864 2.3e-73 279.3 189 74.6
FAN08G0270 Fragaria x ananassa HOM05D007067 ORTHO05D008864 3.8e-73 278.5 193 73.6
FAN18G1220 Fragaria x ananassa HOM05D007067 ORTHO05D008864 5.0e-73 278.1 193 73.6
RcHm_v2.0_Chr7g0181701 Rosa chinensis HOM05D007067 ORTHO05D008864 5.0e-73 278.1 193 74.1
MD06G1195600 Malus domestica HOM05D007067 ORTHO05D008864 1.5e-72 276.6 190 75.3
Prupe.5G195500 Prunus persica HOM05D007067 ORTHO05D008864 1.5e-72 276.6 193 75.1
Potri.012G068500 Populus trichocarpa HOM05D007067 ORTHO05D008864 1.9e-72 276.2 182 73.1
Peaxi162Scf00106g00326 Petunia axillaris HOM05D007067 ORTHO05D008864 3.3e-72 275.4 178 76.4
QL10p017305 Quercus lobata HOM05D007067 ORTHO05D008864 5.6e-72 274.6 184 71.2
MSTRG.9621 Avicennia marina HOM05D007067 ORTHO05D008864 2.8e-71 272.3 185 71.9
Dinv38731 Davidia involucrata HOM05D007067 ORTHO05D008864 2.8e-71 272.3 189 75.1
DCAR_016569 Daucus carota HOM05D007067 ORTHO05D008864 6.1e-71 271.2 191 72.8
MD14G1202700 Malus domestica HOM05D007067 ORTHO05D008864 6.1e-71 271.2 191 74.3
Sabra12G0047100 Salix brachista HOM05D007067 ORTHO05D008864 4.0e-70 268.5 182 70.9
CiPaw.11G046200 Carya illinoinensis HOM05D007067 ORTHO05D008864 8.9e-70 267.3 182 70.3
TWI60G1483 Tripterygium wilfordii HOM05D007067 ORTHO05D008864 7.5e-69 264.2 182 69.8
EL10Ac5g11044 Beta vulgaris HOM05D007067 ORTHO05D008864 1.4e-67 260.0 190 69.5
Duzib205G1209 Durio zibethinus HOM05D007067 ORTHO05D008864 1.4e-67 260.0 189 70.9
Migut.D01803 Erythranthe guttata HOM05D007067 ORTHO05D008864 1.4e-67 260.0 190 67.4
HanXRQChr05g0156061 Helianthus annuus HOM05D007067 ORTHO05D008864 4.1e-67 258.5 190 72.1
MBI02_g23462_MAGBIO Magnolia biondii HOM05D007067 ORTHO05D008864 2.7e-66 255.8 185 67.6
Aqoxy3G00483 Aquilegia oxysepala HOM05D007067 ORTHO05D008864 6.0e-66 254.6 190 70.5
PGSC0003DMG400021933 Solanum tuberosum HOM05D007067 ORTHO05D008864 1.7e-65 253.1 185 70.8
SalBow3G2729 Salvia bowleyana HOM05D007067 ORTHO05D008864 6.6e-65 251.1 189 68.8
Thecc.03G091100 Theobroma cacao HOM05D007067 ORTHO05D008864 6.6e-65 251.1 187 68.4
PSO063G5395 Papaver somniferum HOM05D007067 ORTHO05D008864 3.3e-64 248.8 188 70.2
CANSAT56G4102 Cannabis sativa HOM05D007067 ORTHO05D008864 4.3e-64 248.4 184 67.4
CDE02G3919 Ceratophyllum demersum HOM05D007067 ORTHO05D008864 4.3e-64 248.4 194 66.5
PSO832G0421 Papaver somniferum HOM05D007067 ORTHO05D008864 4.3e-64 248.4 188 70.2
Solyc12g036170.2 Solanum lycopersicum HOM05D007067 ORTHO05D008864 4.3e-64 248.4 185 71.4
ClCG06G016120 Citrullus lanatus HOM05D007067 ORTHO05D008864 1.2e-63 246.9 182 67.6
Sopen12g016290 Solanum pennellii HOM05D007067 ORTHO05D008864 1.6e-63 246.5 185 70.3
Hma1.2p1_0637F.1_g193620 Hydrangea macrophylla HOM05D007067 ORTHO05D008864 2.1e-63 246.1 127 89.8
Eucgr.K02487 Eucalyptus grandis HOM05D007067 ORTHO05D008864 3.6e-63 245.4 183 67.2
Lj5A109T72 Lonicera japonica HOM05D007067 ORTHO05D008864 2.3e-62 242.7 155 75.5
MELO3C017182.2 Cucumis melo HOM05D007067 ORTHO05D008864 3.1e-62 242.3 182 68.1
Gohir.A03G067300 Gossypium hirsutum HOM05D007067 ORTHO05D008864 4.0e-62 241.9 182 68.1
Cpa.g.sc111.20 Carica papaya HOM05D007067 ORTHO05D008864 1.5e-61 240.0 182 65.9
CsaV3_1G002440 Cucumis sativus L. HOM05D007067 ORTHO05D008864 2.0e-61 239.6 182 68.1
Gorai.003G097800 Gossypium raimondii HOM05D007067 ORTHO05D008864 3.4e-61 238.8 182 67.6
Sed0012968 Sechium edule HOM05D007067 ORTHO05D008864 3.4e-61 238.8 182 66.5
Gohir.D03G093800 Gossypium hirsutum HOM05D007067 ORTHO05D008864 4.4e-61 238.4 182 68.7
Atru.chr9.195 Acer truncatum HOM05D007067 ORTHO05D008864 9.8e-61 237.3 184 66.8
ECA246G0430 Erigeron canadensis HOM05D007067 ORTHO05D008864 1.4e-59 233.4 191 66.0
TPR.G11876 Trifolium pratense HOM05D007067 ORTHO05D008864 2.4e-59 232.6 189 62.4
Ca_27682_v3 Cicer arietinum L. HOM05D007067 ORTHO05D008864 9.2e-59 230.7 189 61.9
Glyma.04G167400 Glycine max HOM05D007067 ORTHO05D008864 9.2e-59 230.7 183 65.0
Lsat_1_v5_gn_5_20880 Lactuca sativa HOM05D007067 ORTHO05D008864 1.2e-58 230.3 157 75.2
Phvul.009G186200 Phaseolus vulgaris HOM05D007067 ORTHO05D008864 1.2e-58 230.3 190 66.3
AUR62008437 Chenopodium quinoa HOM05D007067 ORTHO05D008864 2.1e-58 229.6 130 81.5
Lj1g0007284 Lotus japonicus HOM05D007067 ORTHO05D008864 4.6e-58 228.4 184 62.5
Glyma.06G195200 Glycine max HOM05D007067 ORTHO05D008864 1.7e-57 226.5 183 63.4
Lalb_Chr08g0235641 Lupinus albus HOM05D007067 ORTHO05D008864 5.1e-57 224.9 194 61.3
ATR0564G121 Amborella trichopoda HOM05D007067 ORTHO05D008864 1.9e-56 223.0 196 61.7
arahy.Tifrunner.gnm1.ann1.V8ZK3N Arachis hypogaea HOM05D007067 ORTHO05D008864 4.3e-56 221.9 189 63.0
THA.LOC104808257 Tarenaya hassleriana HOM05D007067 ORTHO05D008864 4.3e-56 221.9 185 61.1
unitig_0.g778 Utricularia gibba HOM05D007067 ORTHO05D008864 4.3e-56 221.9 189 60.3
Medtr3g435320 Medicago truncatula HOM05D007067 ORTHO05D008864 7.3e-56 221.1 189 62.4
arahy.Tifrunner.gnm1.ann1.JMB3VF Arachis hypogaea HOM05D007067 ORTHO05D008864 9.5e-56 220.7 189 63.0
CDE09G1053 Ceratophyllum demersum HOM05D007067 ORTHO05D008864 2.8e-55 219.2 155 69.0
Psat5g201280 Pisum sativum HOM05D007067 ORTHO05D008864 2.8e-55 219.2 189 60.8
Eucgr.K02485 Eucalyptus grandis HOM05D007067 ORTHO05D008864 6.8e-54 214.5 169 63.3
Peaxi162Scf00106g00037 Petunia axillaris HOM05D007067 ORTHO05D008864 2.6e-53 212.6 118 87.3
BcaB07g31890 Brassica carinata HOM05D007067 ORTHO05D008864 3.2e-51 205.7 186 59.7
PGR044G1431 Punica granatum HOM05D007067 ORTHO05D008864 5.4e-51 204.9 113 82.3
AT1G18730 Arabidopsis thaliana HOM05D007067 ORTHO05D008864 2.7e-50 202.6 189 58.7
Sp1g16740 Schrenkiella parvula HOM05D007067 ORTHO05D008864 2.7e-50 202.6 188 59.6
AL1G31200 Arabidopsis lyrata HOM05D007067 ORTHO05D008864 3.5e-50 202.2 186 59.7
C08p43060 Brassica napus HOM05D007067 ORTHO05D008864 3.5e-50 202.2 144 68.1
BcaC05g25773 Brassica carinata HOM05D007067 ORTHO05D008864 1.0e-49 200.7 127 75.6
C05p17040 Brassica napus HOM05D007067 ORTHO05D008864 1.0e-49 200.7 127 75.6
BolC5t30410H Brassica oleracea HOM05D007067 ORTHO05D008864 1.0e-49 200.7 127 75.6
Thhalv10008902m.g Eutrema salsugineum HOM05D007067 ORTHO05D008864 1.0e-49 200.7 127 75.6
Carub.0001s1838 Capsella rubella HOM05D007067 ORTHO05D008864 1.3e-49 200.3 127 75.6
A06p14840 Brassica napus HOM05D007067 ORTHO05D008864 2.3e-49 199.5 188 58.5
BraA06t24606Z Brassica rapa HOM05D007067 ORTHO05D008864 2.3e-49 199.5 188 58.5
A09p59720 Brassica napus HOM05D007067 ORTHO05D008864 3.0e-49 199.1 144 67.4
BraA09t41348Z Brassica rapa HOM05D007067 ORTHO05D008864 3.0e-49 199.1 144 67.4
CARHR019370 Cardamine hirsuta HOM05D007067 ORTHO05D008864 3.0e-49 199.1 127 74.8
BcaB03g14481 Brassica carinata HOM05D007067 ORTHO05D008864 5.1e-49 198.4 127 74.8
BolC8t51861H Brassica oleracea HOM05D007067 ORTHO05D008864 7.3e-48 194.5 133 72.2
AUR62021654 Chenopodium quinoa HOM05D007067 ORTHO05D008864 3.6e-47 192.2 149 63.8
COL.COLO4_28333 Corchorus olitorius HOM05D007067 ORTHO05D008864 2.6e-45 186.0 185 57.8
Aa31LG7G3520 Aethionema arabicum HOM05D007067 ORTHO05D008864 4.9e-44 181.8 115 70.4
Zm00001eb254450 Zea mays HOM05D007067 ORTHO05D008864 5.1e-41 171.8 143 59.4
Os02g0744000 Oryza sativa ssp. japonica HOM05D007067 ORTHO05D008864 6.2e-39 164.9 114 65.8
Rhsim08G0153500 Rhododendron simsii HOM05D007067 ORTHO05D008864 4.4e-37 158.7 183 54.1
FvH4_5g14690 Fragaria vesca HOM05D007067 ORTHO05D008864 9.9e-37 157.5 125 64.0
Ciclev10022880m.g Citrus clementina HOM05D007067 ORTHO05D008864 4.9e-36 155.2 116 59.5
BcaC07g41296 Brassica carinata HOM05D007067 ORTHO05D008864 1.0e-33 147.5 110 61.8
SEGI_39094 Sequoiadendron giganteum HOM05D007067 ORTHO05D008864 4.3e-32 142.1 154 51.3
Manes.06G090801 Manihot esculenta HOM05D007067 ORTHO05D008864 1.8e-25 120.2 113 54.9
Haze_07309 Corylus avellana HOM05D007067 ORTHO05D008864 8.7e-25 117.9 189 44.4
Mapoly0149s0008 Marchantia polymorpha HOM05D007067 ORTHO05D008864 5.8e-21 105.1 106 47.2
CBR_g30507 Chara braunii HOM05D007067 ORTHO05D008864 1.7e-20 103.6 94 51.1
Pp3c16_3930 Physcomitrium patens HOM05D007067 ORTHO05D008864 2.9e-20 102.8 99 52.5
Ah.11g048310 Amaranthus hybridus HOM05D007067 ORTHO05D008864 3.4e-13 79.3 47 70.2
COL.COLO4_28352 Corchorus olitorius HOM05D004600 ORTHO05D005471 2.1e-10 70.1 52 76.9
Rhsim08G0168600 Rhododendron simsii HOM05D000306 ORTHO05D023263 3.3e-08 62.8 180 31.1


User provided reference genes

Program Settings