Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR622G0593 Trochodendron aralioides HOM05D003373 ORTHO05D004419 2.5e-72 275.4 146 100.0
TAR374G1081 Trochodendron aralioides HOM05D003373 ORTHO05D004419 2.2e-44 182.6 134 78.4
Nn3g17111 Nelumbo nucifera HOM05D003373 ORTHO05D004419 1.5e-40 169.9 126 75.4
TAR629G0400 Trochodendron aralioides HOM05D003373 ORTHO05D004419 4.6e-34 148.3 98 78.6
Nn4g23016 Nelumbo nucifera HOM05D003373 ORTHO05D004419 6.1e-34 147.9 126 67.5
Cpa.g.sc5.285 Carica papaya HOM05D003373 ORTHO05D004419 1.4e-30 136.7 98 76.5
Manes.05G095400 Manihot esculenta HOM05D003373 ORTHO05D004419 1.2e-29 133.7 129 62.8
CsaV3_5G032210 Cucumis sativus L. HOM05D003373 ORTHO05D004419 2.6e-29 132.5 118 62.7
Cfa009067 Carpinus fangiana HOM05D003373 ORTHO05D004419 5.9e-29 131.3 120 64.2
Dinv24947 Davidia involucrata HOM05D003373 ORTHO05D004419 5.9e-29 131.3 131 57.3
Duzib251G0793 Durio zibethinus HOM05D003373 ORTHO05D004419 1.7e-28 129.8 120 61.7
MELO3C012054.2 Cucumis melo HOM05D003373 ORTHO05D004419 2.2e-28 129.4 118 61.9
Dinv34191 Davidia involucrata HOM05D003373 ORTHO05D004419 2.2e-28 129.4 123 60.2
ClCG05G024690 Citrullus lanatus HOM05D003373 ORTHO05D004419 2.9e-28 129.0 123 61.8
Manes.01G192000 Manihot esculenta HOM05D003373 ORTHO05D004419 3.8e-28 128.6 120 61.7
THA.LOC104822090 Tarenaya hassleriana HOM05D003373 ORTHO05D004419 5.0e-28 128.3 120 61.7
Carub.0001s2388 Capsella rubella HOM05D003373 ORTHO05D004419 6.5e-28 127.9 102 65.7
PGR102G0330 Punica granatum HOM05D003373 ORTHO05D004419 6.5e-28 127.9 94 71.3
Actinidia31168 Actinidia chinensis HOM05D003373 ORTHO05D004419 1.1e-27 127.1 118 61.0
CiPaw.05G141000 Carya illinoinensis HOM05D003373 ORTHO05D004419 1.1e-27 127.1 101 69.3
MBI01_g01238_MAGBIO Magnolia biondii HOM05D003373 ORTHO05D004419 1.9e-27 126.3 82 80.5
Duzib248G1211 Durio zibethinus HOM05D003373 ORTHO05D004419 3.2e-27 125.6 87 74.7
AT1G27090 Arabidopsis thaliana HOM05D003373 ORTHO05D004419 4.2e-27 125.2 121 58.7
MD13G1080700 Malus domestica HOM05D003373 ORTHO05D004419 5.5e-27 124.8 97 70.1
Solyc05g006900.2 Solanum lycopersicum HOM05D003373 ORTHO05D004419 5.5e-27 124.8 92 70.7
Sopen05g002860 Solanum pennellii HOM05D003373 ORTHO05D004419 5.5e-27 124.8 92 70.7
Gohir.A05G320900 Gossypium hirsutum HOM05D003373 ORTHO05D004419 7.2e-27 124.4 87 74.7
Gorai.009G346800 Gossypium raimondii HOM05D003373 ORTHO05D004419 7.2e-27 124.4 84 77.4
Thecc.02G234000 Theobroma cacao HOM05D003373 ORTHO05D004419 9.4e-27 124.0 127 59.8
Gohir.D05G323100 Gossypium hirsutum HOM05D003373 ORTHO05D004419 1.6e-26 123.2 83 77.1
Sed0023513 Sechium edule HOM05D003373 ORTHO05D004419 1.6e-26 123.2 87 73.6
PSO017G0861 Papaver somniferum HOM05D003373 ORTHO05D004419 2.1e-26 122.9 114 62.3
PSO478G2017 Papaver somniferum HOM05D003373 ORTHO05D004419 2.1e-26 122.9 114 62.3
Actinidia04028 Actinidia chinensis HOM05D003373 ORTHO05D004419 3.6e-26 122.1 115 59.1
AL1G38400 Arabidopsis lyrata HOM05D003373 ORTHO05D004419 4.7e-26 121.7 113 59.3
CDE08G0466 Ceratophyllum demersum HOM05D003373 ORTHO05D004419 4.7e-26 121.7 94 70.2
CDE09G0772 Ceratophyllum demersum HOM05D003373 ORTHO05D004419 4.7e-26 121.7 93 69.9
Cc11_g13620 Coffea canephora HOM05D003373 ORTHO05D004419 4.7e-26 121.7 113 61.9
Haze_12097 Corylus avellana HOM05D003373 ORTHO05D004419 4.7e-26 121.7 119 61.3
MD16G1080200 Malus domestica HOM05D003373 ORTHO05D004419 4.7e-26 121.7 105 65.7
PSO832G2541 Papaver somniferum HOM05D003373 ORTHO05D004419 6.1e-26 121.3 84 76.2
QL03p066330 Quercus lobata HOM05D003373 ORTHO05D004419 6.1e-26 121.3 85 76.5
PGSC0003DMG400017635 Solanum tuberosum HOM05D003373 ORTHO05D004419 6.1e-26 121.3 92 69.6
Gohir.D04G137300 Gossypium hirsutum HOM05D003373 ORTHO05D004419 7.9e-26 120.9 126 59.5
Potri.008G194200 Populus trichocarpa HOM05D003373 ORTHO05D004419 7.9e-26 120.9 87 72.4
Aa31LG4G10950 Aethionema arabicum HOM05D003373 ORTHO05D004419 1.4e-25 120.2 122 57.4
Gohir.A04G097600 Gossypium hirsutum HOM05D003373 ORTHO05D004419 1.4e-25 120.2 126 59.5
RcHm_v2.0_Chr4g0445281 Rosa chinensis HOM05D003373 ORTHO05D004419 1.4e-25 120.2 92 72.8
Gorai.012G121700 Gossypium raimondii HOM05D003373 ORTHO05D004419 1.8e-25 119.8 126 58.7
Psat2g126240 Pisum sativum HOM05D003373 ORTHO05D004419 1.8e-25 119.8 125 57.6
COL.COLO4_36201 Corchorus olitorius HOM05D003373 ORTHO05D004419 2.3e-25 119.4 120 58.3
Potri.010G034900 Populus trichocarpa HOM05D003373 ORTHO05D004419 2.3e-25 119.4 109 62.4
CANSAT35G1086 Cannabis sativa HOM05D003373 ORTHO05D004419 3.0e-25 119.0 116 58.6
Duzib268G0991 Durio zibethinus HOM05D003373 ORTHO05D004419 3.9e-25 118.6 114 60.5
PSO591G0008 Papaver somniferum HOM05D003373 ORTHO05D004419 3.9e-25 118.6 84 73.8
Sabra10G0029900 Salix brachista HOM05D003373 ORTHO05D004419 5.1e-25 118.2 107 63.6
Lalb_Chr10g0097901 Lupinus albus HOM05D003373 ORTHO05D004419 6.7e-25 117.9 117 59.8
Sabra08G0147700 Salix brachista HOM05D003373 ORTHO05D004419 6.7e-25 117.9 107 62.6
Haze_17060 Corylus avellana HOM05D003373 ORTHO05D004419 8.8e-25 117.5 119 60.5
Lj3A1043T79 Lonicera japonica HOM05D003373 ORTHO05D004419 1.1e-24 117.1 115 60.9
Thhalv10007745m.g Eutrema salsugineum HOM05D003373 ORTHO05D004419 2.0e-24 116.3 116 56.0
CSS0018229 Camellia sinensis var. sinensis HOM05D003373 ORTHO05D004419 2.6e-24 115.9 110 61.8
Lj2g0024788 Lotus japonicus HOM05D003373 ORTHO05D004419 2.6e-24 115.9 87 69.0
Nitab4.5_0008971g0050 Nicotiana tabacum HOM05D003373 ORTHO05D004419 2.6e-24 115.9 110 60.0
arahy.Tifrunner.gnm1.ann1.NIK4ZB Arachis hypogaea HOM05D003373 ORTHO05D004419 4.4e-24 115.2 86 68.6
Nitab4.5_0002382g0020 Nicotiana tabacum HOM05D003373 ORTHO05D004419 5.7e-24 114.8 89 67.4
Sopen01g006060 Solanum pennellii HOM05D003373 ORTHO05D004419 5.7e-24 114.8 113 58.4
vmacro16318 Vaccinium macrocarpon HOM05D003373 ORTHO05D004419 5.7e-24 114.8 104 61.5
CARHR024810 Cardamine hirsuta HOM05D003373 ORTHO05D004419 7.4e-24 114.4 85 70.6
Eucgr.B02587 Eucalyptus grandis HOM05D003373 ORTHO05D004419 7.4e-24 114.4 81 75.3
Lsat_1_v5_gn_4_9400 Lactuca sativa HOM05D003373 ORTHO05D004419 7.4e-24 114.4 94 61.7
Lj6A795T73 Lonicera japonica HOM05D003373 ORTHO05D004419 7.4e-24 114.4 119 56.3
Solyc01g010440.4 Solanum lycopersicum HOM05D003373 ORTHO05D004419 7.4e-24 114.4 112 58.9
TPR.G31079 Trifolium pratense HOM05D003373 ORTHO05D004419 7.4e-24 114.4 106 60.4
Ciclev10031519m.g Citrus clementina HOM05D003373 ORTHO05D004419 9.7e-24 114.0 93 64.5
Lalb_Chr04g0256431 Lupinus albus HOM05D003373 ORTHO05D004419 9.7e-24 114.0 131 51.9
Sc11g0001580 Simmondsia chinensis HOM05D003373 ORTHO05D004419 1.3e-23 113.6 114 56.1
Nitab4.5_0000710g0020 Nicotiana tabacum HOM05D003373 ORTHO05D004419 1.7e-23 113.2 109 60.6
Sp1g21690 Schrenkiella parvula HOM05D003373 ORTHO05D004419 1.7e-23 113.2 124 56.5
TWI18G0023 Tripterygium wilfordii HOM05D003373 ORTHO05D004419 2.2e-23 112.8 121 52.9
Aqoxy3G03242 Aquilegia oxysepala HOM05D003373 ORTHO05D004419 2.8e-23 112.5 80 71.2
Rhsim12G0129000 Rhododendron simsii HOM05D003373 ORTHO05D004419 3.7e-23 112.1 106 59.4
Glyma.01G041300 Glycine max HOM05D003373 ORTHO05D004419 4.8e-23 111.7 85 70.6
arahy.Tifrunner.gnm1.ann1.YF4WKN Arachis hypogaea HOM05D003373 ORTHO05D004419 6.3e-23 111.3 83 68.7
BraA09t39545Z Brassica rapa HOM05D003373 ORTHO05D006520 6.3e-23 111.3 98 59.2
Ca_04701_v3 Cicer arietinum L. HOM05D003373 ORTHO05D004419 6.3e-23 111.3 114 58.8
FAN17G1936 Fragaria x ananassa HOM05D003373 ORTHO05D004419 6.3e-23 111.3 86 67.4
Phvul.002G067800 Phaseolus vulgaris HOM05D003373 ORTHO05D004419 6.3e-23 111.3 99 58.6
PGSC0003DMG400007711 Solanum tuberosum HOM05D003373 ORTHO05D004419 6.3e-23 111.3 113 56.6
BcaB07g32385 Brassica carinata HOM05D003373 ORTHO05D004419 8.2e-23 110.9 117 58.1
BolC8t49893H Brassica oleracea HOM05D003373 ORTHO05D004419 8.2e-23 110.9 93 61.3
HPP92_019601 Vanilla planifolia HOM05D003373 ORTHO05D004419 8.2e-23 110.9 73 78.1
HPP92_019651 Vanilla planifolia HOM05D003373 ORTHO05D004419 8.2e-23 110.9 73 78.1
FvH4_4g35680 Fragaria vesca HOM05D003373 ORTHO05D004419 1.1e-22 110.5 86 68.6
FAN22G0404 Fragaria x ananassa HOM05D003373 ORTHO05D004419 1.1e-22 110.5 86 68.6
A09p40480 Brassica napus HOM05D003373 ORTHO05D004419 1.4e-22 110.2 86 64.0
Hma1.2p1_1045F.1_g251400 Hydrangea macrophylla HOM05D003373 ORTHO05D004419 1.8e-22 109.8 107 57.9
Hund25279 Selenicereus undatus HOM05D003373 ORTHO05D004419 1.8e-22 109.8 112 58.0
EL10Ac6g13134 Beta vulgaris HOM05D003373 ORTHO05D004419 2.4e-22 109.4 123 55.3
HanXRQChr17g0570411 Helianthus annuus HOM05D003373 ORTHO05D004419 2.4e-22 109.4 94 59.6
Lsat_1_v5_gn_8_163340 Lactuca sativa HOM05D003373 ORTHO05D004419 2.4e-22 109.4 118 53.4
Nitab4.5_0003297g0010 Nicotiana tabacum HOM05D003373 ORTHO05D004419 2.4e-22 109.4 100 60.0
Atru.chr11.1870 Acer truncatum HOM05D003373 ORTHO05D004419 3.1e-22 109.0 88 65.9
BcaC07g39253 Brassica carinata HOM05D003373 ORTHO05D004419 3.1e-22 109.0 90 62.2
FAN12G3521 Fragaria x ananassa HOM05D003373 ORTHO05D004419 3.1e-22 109.0 86 67.4
TWI36G0800 Tripterygium wilfordii HOM05D003373 ORTHO05D004419 3.1e-22 109.0 116 52.6
MSTRG.2363 Avicennia marina HOM05D003373 ORTHO05D004419 5.3e-22 108.2 113 54.9
BcaB03g11980 Brassica carinata HOM05D003373 ORTHO05D004419 5.3e-22 108.2 81 69.1
A08p27730 Brassica napus HOM05D003373 ORTHO05D004419 5.3e-22 108.2 108 57.4
BraA08t34708Z Brassica rapa HOM05D003373 ORTHO05D004419 5.3e-22 108.2 108 57.4
MSTRG.13397 Avicennia marina HOM05D003373 ORTHO05D004419 7.0e-22 107.8 118 54.2
BcaC05g26344 Brassica carinata HOM05D003373 ORTHO05D004419 7.0e-22 107.8 109 56.0
FAN07G0752 Fragaria x ananassa HOM05D003373 ORTHO05D004419 7.0e-22 107.8 86 66.3
DCAR_007126 Daucus carota HOM05D003373 ORTHO05D004419 9.1e-22 107.5 112 55.4
BolC5t31088H Brassica oleracea HOM05D003373 ORTHO05D004419 1.5e-21 106.7 113 55.8
AUR62026466 Chenopodium quinoa HOM05D003373 ORTHO05D004419 1.5e-21 106.7 123 56.1
VMungo1215G0200 Vigna mungo HOM05D003373 ORTHO05D004419 2.0e-21 106.3 109 55.0
C05p23700 Brassica napus HOM05D003373 ORTHO05D004419 3.4e-21 105.5 109 55.0
DCAR_031055 Daucus carota HOM05D003373 ORTHO05D004419 3.4e-21 105.5 87 64.4
Migut.L01354 Erythranthe guttata HOM05D003373 ORTHO05D004419 3.4e-21 105.5 124 56.5
PGR119G0099 Punica granatum HOM05D003373 ORTHO05D004419 3.4e-21 105.5 95 61.1
Glyma.02G022800 Glycine max HOM05D003373 ORTHO05D004419 4.5e-21 105.1 126 53.2
Zm00001eb053410 Zea mays HOM05D003373 ORTHO05D004419 4.5e-21 105.1 81 67.9
SalBow2G1107 Salvia bowleyana HOM05D003373 ORTHO05D004419 5.9e-21 104.8 124 54.0
SGA_v2.0_scaffold63G21675 Striga asiatica HOM05D003373 ORTHO05D004419 5.9e-21 104.8 85 64.7
SGA_v2.0_scaffold467G52045 Striga asiatica HOM05D003373 ORTHO05D004419 7.7e-21 104.4 119 52.1
Peaxi162Scf00209g00714 Petunia axillaris HOM05D003373 ORTHO05D004419 1.0e-20 104.0 113 53.1
SGA_v2.0_scaffold87G26974 Striga asiatica HOM05D003373 ORTHO05D004419 1.0e-20 104.0 89 64.0
Os03g0688200 Oryza sativa ssp. japonica HOM05D003373 ORTHO05D004419 1.3e-20 103.6 75 70.7
SEGI_31454 Sequoiadendron giganteum HOM05D003373 ORTHO05D004419 1.3e-20 103.6 79 69.6
AUR62026278 Chenopodium quinoa HOM05D003373 ORTHO05D004419 1.7e-20 103.2 123 54.5
Medtr5g037960 Medicago truncatula HOM05D003373 ORTHO05D004419 1.7e-20 103.2 114 56.1
Oeu057174.1 Olea europaea HOM05D003373 ORTHO05D004419 2.2e-20 102.8 118 52.5
Zm00001eb217180 Zea mays HOM05D003373 ORTHO05D004419 2.2e-20 102.8 81 65.4
Ah.02g131980 Amaranthus hybridus HOM05D003373 ORTHO05D004419 5.0e-20 101.7 87 62.1
Lalb_Chr17g0340241 Lupinus albus HOM05D003373 ORTHO05D004419 6.5e-20 101.3 120 55.0
ATR0665G354 Amborella trichopoda HOM05D003373 ORTHO05D004419 8.5e-20 100.9 125 55.2
unitig_52.g17172 Utricularia gibba HOM05D003373 ORTHO05D004419 1.4e-19 100.1 91 61.5
Migut.E00120 Erythranthe guttata HOM05D003373 ORTHO05D004419 2.5e-19 99.4 122 50.8
SMO012G0008 Selaginella moellendorffii HOM05D003373 ORTHO05D004419 2.5e-19 99.4 76 67.1
Mapoly0083s0034 Marchantia polymorpha HOM05D003373 ORTHO05D004419 3.2e-19 99.0 109 56.0
Pp3c16_590 Physcomitrium patens HOM05D003373 ORTHO05D004419 5.5e-19 98.2 108 53.7
PGSC0003DMG400010979 Solanum tuberosum HOM05D003373 ORTHO05D013173 1.2e-18 97.1 83 63.9
Lsat_1_v5_gn_8_36201 Lactuca sativa HOM05D003373 ORTHO05D004419 1.6e-18 96.7 112 50.0
SMO141G0251 Selaginella moellendorffii HOM05D003373 ORTHO05D004419 2.1e-18 96.3 110 50.9
GSVIVG01020088001 Vitis vinifera HOM05D003373 ORTHO05D004419 4.7e-18 95.1 79 67.1
Pp3c25_8180 Physcomitrium patens HOM05D003373 ORTHO05D004419 8.0e-18 94.4 113 52.2
Pp3c25_8182 Physcomitrium patens HOM05D003373 ORTHO05D004419 8.0e-18 94.4 113 52.2
VMungo0540G1512 Vigna mungo HOM05D003373 ORTHO05D013173 8.0e-18 94.4 109 50.5
unitig_62.g23682 Utricularia gibba HOM05D003373 ORTHO05D004419 1.4e-17 93.6 85 61.2
VMungo0464G1165 Vigna mungo HOM05D003373 ORTHO05D004419 1.4e-17 93.6 109 50.5
HanXRQChr03g0092821 Helianthus annuus HOM05D003373 ORTHO05D004419 3.0e-17 92.4 108 50.0
SGA_v2.0_scaffold166G38286 Striga asiatica HOM05D003373 ORTHO05D004419 3.9e-17 92.0 82 57.3
SEGI_00885 Sequoiadendron giganteum HOM05D003373 ORTHO05D004419 5.2e-17 91.7 140 45.7
ECA234G3640 Erigeron canadensis HOM05D003373 ORTHO05D004419 6.7e-17 91.3 92 54.3
AagrBONN_evm.TU.Sc2ySwM_228.3903 Anthoceros agrestis HOM05D003373 ORTHO05D004419 4.4e-16 88.6 70 65.7
Oeu043029.1 Olea europaea HOM05D003373 ORTHO05D004419 3.7e-15 85.5 75 61.3
AL3G40300 Arabidopsis lyrata HOM05D003373 ORTHO05D013173 8.2e-15 84.3 130 46.2
Thhalv10029189m.g Eutrema salsugineum HOM05D003373 ORTHO05D013173 1.1e-14 84.0 77 62.3
AT3G24690 Arabidopsis thaliana HOM05D003373 ORTHO05D013173 4.1e-14 82.0 64 67.2
C09p33540 Brassica napus HOM05D003373 ORTHO05D013173 5.3e-14 81.6 79 54.4
BolC9t56189H Brassica oleracea HOM05D003373 ORTHO05D013173 5.3e-14 81.6 79 54.4
BcaC04g21286 Brassica carinata HOM05D003373 ORTHO05D013173 1.2e-13 80.5 80 53.8
CBR_g4061 Chara braunii HOM05D003373 ORTHO05D004419 2.0e-13 79.7 73 49.3
SalBow3G2377 Salvia bowleyana HOM05D003373 ORTHO05D004419 3.5e-13 79.0 64 68.8
CiPaw.06G080000 Carya illinoinensis HOM05D003373 ORTHO05D004419 5.9e-13 78.2 84 53.6
A03p29950 Brassica napus HOM05D003373 ORTHO05D013173 1.7e-12 76.6 75 58.7
C03p36240 Brassica napus HOM05D003373 ORTHO05D013173 1.7e-12 76.6 75 58.7
BolC3t15933H Brassica oleracea HOM05D003373 ORTHO05D013173 1.7e-12 76.6 75 58.7
BraA03t12184Z Brassica rapa HOM05D003373 ORTHO05D013173 3.8e-12 75.5 120 42.5
A09p26380 Brassica napus HOM05D003373 ORTHO05D013173 6.5e-12 74.7 113 44.2
BraA09t38212Z Brassica rapa HOM05D003373 ORTHO05D013173 6.5e-12 74.7 113 44.2
BcaB01g01800 Brassica carinata HOM05D003373 ORTHO05D013173 1.9e-11 73.2 119 39.5
SalBow8G0803 Salvia bowleyana HOM05D003373 ORTHO05D004419 3.6e-10 68.9 64 56.2
Nitab4.5_0003732g0020 Nicotiana tabacum HOM05D003373 ORTHO05D004419 4.0e-09 65.5 76 51.3
Haze_04255 Corylus avellana HOM05D003373 ORTHO05D004419 3.3e-08 62.4 80 51.2
Glyma.06G207900 Glycine max HOM05D003373 ORTHO05D004419 4.8e-07 58.5 49 55.1
QL08p000192 Quercus lobata HOM05D003373 ORTHO05D004419 4.8e-07 58.5 73 52.1
BcaB03g14104 Brassica carinata HOM05D003373 ORTHO05D004419 5.3e-06 55.1 50 60.0


User provided reference genes

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