Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR622G0524 Trochodendron aralioides HOM05D004724 ORTHO05D005734 0.0e+00 1152.9 614 100.0
TAR374G1337 Trochodendron aralioides HOM05D004724 ORTHO05D005734 2.4e-302 1041.6 614 90.4
Nn3g17424 Nelumbo nucifera HOM05D004724 ORTHO05D005734 3.2e-286 988.0 610 81.0
Nn4g23396 Nelumbo nucifera HOM05D004724 ORTHO05D005734 4.2e-286 987.6 609 80.8
CiPaw.05G125900 Carya illinoinensis HOM05D004724 ORTHO05D005734 4.5e-272 941.0 621 76.8
Cfa008886 Carpinus fangiana HOM05D004724 ORTHO05D005734 2.6e-264 915.2 624 78.5
MBI16_g13587_MAGBIO Magnolia biondii HOM05D004724 ORTHO05D005734 1.0e-263 913.3 622 81.0
GSVIVG01012211001 Vitis vinifera HOM05D004724 ORTHO05D005734 1.1e-262 909.8 618 75.9
QL03p072107 Quercus lobata HOM05D004724 ORTHO05D005734 9.4e-262 906.7 631 73.2
QL03p072513 Quercus lobata HOM05D004724 ORTHO05D005734 1.6e-261 906.0 631 73.2
Actinidia28645 Actinidia chinensis HOM05D004724 ORTHO05D005734 1.8e-260 902.5 613 73.1
Hma1.2p1_0354F.1_g133420 Hydrangea macrophylla HOM05D004724 ORTHO05D005734 4.8e-258 894.4 619 73.5
Eucgr.B03160 Eucalyptus grandis HOM05D004724 ORTHO05D005734 2.4e-257 892.1 633 72.7
ClCG08G010390 Citrullus lanatus HOM05D004724 ORTHO05D005734 7.0e-257 890.6 617 75.9
CSS0008548 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 4.5e-256 887.9 617 73.1
Lj6A780T47 Lonicera japonica HOM05D004724 ORTHO05D005734 1.7e-255 885.9 614 72.5
Atru.chr11.1649 Acer truncatum HOM05D004724 ORTHO05D005734 6.1e-253 877.5 616 75.6
Sc04g0007630 Simmondsia chinensis HOM05D004724 ORTHO05D005734 6.1e-253 877.5 615 71.5
Prupe.1G286100 Prunus persica HOM05D004724 ORTHO05D005734 8.0e-253 877.1 614 75.1
Sed0014019 Sechium edule HOM05D004724 ORTHO05D005734 8.8e-252 873.6 616 75.0
MD13G1063400 Malus domestica HOM05D004724 ORTHO05D005734 1.1e-251 873.2 615 71.5
MD16G1061800 Malus domestica HOM05D004724 ORTHO05D005734 7.4e-251 870.5 615 71.7
Thecc.02G332500 Theobroma cacao HOM05D004724 ORTHO05D005734 2.2e-250 869.0 616 71.3
TWI79G1393 Tripterygium wilfordii HOM05D004724 ORTHO05D005734 6.3e-250 867.5 616 71.1
TWI31G1115 Tripterygium wilfordii HOM05D004724 ORTHO05D005734 1.3e-247 859.8 617 70.7
MELO3C011422.2 Cucumis melo HOM05D004724 ORTHO05D005734 3.2e-246 855.1 616 69.8
PGR102G0250 Punica granatum HOM05D004724 ORTHO05D005734 1.6e-245 852.8 617 68.9
ATR0064G103 Amborella trichopoda HOM05D004724 ORTHO05D005734 4.7e-245 851.3 617 75.2
Gohir.D02G129300 Gossypium hirsutum HOM05D004724 ORTHO05D005734 3.0e-244 848.6 618 68.9
Ciclev10031249m.g Citrus clementina HOM05D004724 ORTHO05D005734 4.0e-244 848.2 615 73.2
Gorai.005G145100 Gossypium raimondii HOM05D004724 ORTHO05D005734 6.7e-244 847.4 618 68.9
Dinv34076 Davidia involucrata HOM05D004724 ORTHO05D005734 1.5e-243 846.3 569 75.2
Dinv15029 Davidia involucrata HOM05D004724 ORTHO05D005734 4.4e-243 844.7 569 75.2
CsaV3_6G033660 Cucumis sativus L. HOM05D004724 ORTHO05D005734 1.7e-242 842.8 616 68.3
Gohir.A03G104200 Gossypium hirsutum HOM05D004724 ORTHO05D005734 3.7e-242 841.6 619 68.8
PSO017G2003 Papaver somniferum HOM05D004724 ORTHO05D005734 5.3e-241 837.8 612 69.3
PSO478G4140 Papaver somniferum HOM05D004724 ORTHO05D005734 1.2e-240 836.6 610 69.3
CANSAT64G0483 Cannabis sativa HOM05D004724 ORTHO05D005734 7.7e-240 833.9 610 71.5
Manes.01G028400 Manihot esculenta HOM05D004724 ORTHO05D005734 1.3e-239 833.2 619 66.6
Haze_11916 Corylus avellana HOM05D004724 ORTHO05D005734 4.2e-238 828.2 633 68.4
COL.COLO4_27896 Corchorus olitorius HOM05D004724 ORTHO05D005734 9.4e-238 827.0 623 71.7
THA.LOC104822013 Tarenaya hassleriana HOM05D004724 ORTHO05D005734 3.0e-236 822.0 626 66.5
Lsat_1_v5_gn_8_47681 Lactuca sativa HOM05D004724 ORTHO05D005734 6.8e-236 820.8 620 70.5
AL1G39280 Arabidopsis lyrata HOM05D004724 ORTHO05D005734 1.7e-234 816.2 619 69.6
THA.LOC104805036 Tarenaya hassleriana HOM05D004724 ORTHO05D005734 1.7e-234 816.2 625 70.6
Carub.0001s2456 Capsella rubella HOM05D004724 ORTHO05D005734 4.8e-234 814.7 619 69.6
HanXRQChr08g0211831 Helianthus annuus HOM05D004724 ORTHO05D005734 5.4e-233 811.2 623 66.3
Migut.E00049 Erythranthe guttata HOM05D004724 ORTHO05D005734 1.2e-232 810.1 611 66.1
CARHR025500 Cardamine hirsuta HOM05D004724 ORTHO05D005734 7.7e-232 807.4 619 65.3
AT1G26460 Arabidopsis thaliana HOM05D004724 ORTHO05D005734 3.8e-231 805.1 619 65.4
RcHm_v2.0_Chr4g0438491 Rosa chinensis HOM05D004724 ORTHO05D005734 5.0e-231 804.7 617 66.9
Lalb_Chr10g0098781 Lupinus albus HOM05D004724 ORTHO05D005734 8.0e-229 797.3 625 66.4
MSTRG.13448 Avicennia marina HOM05D004724 ORTHO05D005734 1.4e-228 796.6 612 66.3
Thhalv10007071m.g Eutrema salsugineum HOM05D004724 ORTHO05D005734 6.8e-228 794.3 611 70.2
FAN12G2645 Fragaria x ananassa HOM05D004724 ORTHO05D005734 1.2e-227 793.5 617 68.6
TPR.G24471 Trifolium pratense HOM05D004724 ORTHO05D005734 4.4e-227 791.6 617 65.2
AUR62003111 Chenopodium quinoa HOM05D004724 ORTHO05D005734 1.3e-226 790.0 614 64.3
FvH4_4g30160 Fragaria vesca HOM05D004724 ORTHO05D005734 1.3e-226 790.0 617 65.2
A09p39880 Brassica napus HOM05D004724 ORTHO05D005734 3.7e-226 788.5 613 68.2
BraA09t39487Z Brassica rapa HOM05D004724 ORTHO05D005734 4.9e-226 788.1 603 68.8
Glyma.01G058200 Glycine max HOM05D004724 ORTHO05D005734 5.4e-225 784.6 623 63.9
Aa31LG7G8630 Aethionema arabicum HOM05D004724 ORTHO05D005734 1.2e-224 783.5 623 63.1
C05p24540 Brassica napus HOM05D004724 ORTHO05D005734 3.5e-224 781.9 610 68.0
BolC5t31188H Brassica oleracea HOM05D004724 ORTHO05D005734 5.0e-223 778.1 610 64.9
FAN22G1297 Fragaria x ananassa HOM05D004724 ORTHO05D005734 8.6e-223 777.3 624 66.8
Glyma.02G116000 Glycine max HOM05D004724 ORTHO05D005734 2.5e-222 775.8 618 64.1
Oeu048146.1 Olea europaea HOM05D004724 ORTHO05D005734 7.3e-222 774.2 616 64.8
Cc11_g12080 Coffea canephora HOM05D004724 ORTHO05D005734 1.2e-221 773.5 637 65.5
ECA233G5398 Erigeron canadensis HOM05D004724 ORTHO05D005734 1.6e-221 773.1 616 67.0
Ca_04959_v3 Cicer arietinum L. HOM05D004724 ORTHO05D005734 3.6e-221 771.9 614 62.9
PGSC0003DMG400028320 Solanum tuberosum HOM05D004724 ORTHO05D005734 1.0e-220 770.4 617 61.9
HPP92_009526 Vanilla planifolia HOM05D004724 ORTHO05D005734 1.4e-220 770.0 615 70.1
CDE04G2698 Ceratophyllum demersum HOM05D004724 ORTHO05D005734 1.8e-220 769.6 626 67.6
Nitab4.5_0004171g0040 Nicotiana tabacum HOM05D004724 ORTHO05D005734 2.3e-220 769.2 617 63.0
HPP92_009555 Vanilla planifolia HOM05D004724 ORTHO05D005734 4.0e-220 768.5 615 70.1
Lj2g0005374 Lotus japonicus HOM05D004724 ORTHO05D005734 5.8e-219 764.6 616 62.5
Potri.010G159100 Populus trichocarpa HOM05D004724 ORTHO05D005734 2.2e-218 762.7 628 64.0
Sopen05g007210 Solanum pennellii HOM05D004724 ORTHO05D005734 1.1e-217 760.4 617 61.1
AUR62007926 Chenopodium quinoa HOM05D004724 ORTHO05D005734 1.9e-217 759.6 618 62.6
FAN07G2095 Fragaria x ananassa HOM05D004724 ORTHO05D005734 4.1e-217 758.4 624 66.5
EL10Ac6g14982 Beta vulgaris HOM05D004724 ORTHO05D005734 2.0e-216 756.1 620 62.9
vmacro16381 Vaccinium macrocarpon HOM05D004724 ORTHO05D005734 2.0e-216 756.1 729 57.5
FAN17G2607 Fragaria x ananassa HOM05D004724 ORTHO05D005734 1.5e-214 750.0 631 65.6
Hund25184 Selenicereus undatus HOM05D004724 ORTHO05D005734 1.9e-214 749.6 618 67.0
Nitab4.5_0000231g0420 Nicotiana tabacum HOM05D004724 ORTHO05D005734 3.1e-212 742.3 664 58.0
CAN.G616.33 Capsicum annuum HOM05D004724 ORTHO05D005734 1.2e-211 740.3 624 60.1
Medtr5g044270 Medicago truncatula HOM05D004724 ORTHO05D005734 6.4e-210 734.6 613 60.8
SalBow8G1172 Salvia bowleyana HOM05D004724 ORTHO05D005734 2.7e-208 729.2 650 59.1
Rhsim12G0135900 Rhododendron simsii HOM05D004724 ORTHO05D005734 2.3e-207 726.1 598 63.5
Sabra10G0120800 Salix brachista HOM05D004724 ORTHO05D005734 9.5e-206 720.7 624 60.7
Aqoxy3G03611 Aquilegia oxysepala HOM05D004724 ORTHO05D005734 4.0e-204 715.3 626 66.1
arahy.Tifrunner.gnm1.ann1.06XI8G Arachis hypogaea HOM05D004724 ORTHO05D005734 1.1e-201 707.2 643 58.3
SalBow2G3108 Salvia bowleyana HOM05D004724 ORTHO05D005734 7.1e-201 704.5 663 57.2
arahy.Tifrunner.gnm1.ann1.CTA0UQ Arachis hypogaea HOM05D004724 ORTHO05D005734 5.6e-198 694.9 681 54.9
Peaxi162Scf00175g00020 Petunia axillaris HOM05D004724 ORTHO05D005734 2.4e-193 679.5 733 50.9
Phvul.003G043100 Phaseolus vulgaris HOM05D004724 ORTHO05D005734 9.6e-190 667.5 613 56.1
Os07g0599000 Oryza sativa ssp. japonica HOM05D004724 ORTHO05D005734 2.2e-186 656.4 597 62.0
SGA_v2.0_scaffold16G07777 Striga asiatica HOM05D004724 ORTHO05D005734 1.9e-185 653.3 639 54.5
Migut.L01196 Erythranthe guttata HOM05D004724 ORTHO05D005734 4.6e-184 648.7 608 56.9
Zm00001eb108470 Zea mays HOM05D004724 ORTHO05D005734 7.8e-184 647.9 598 60.9
Psat2g129640 Pisum sativum HOM05D004724 ORTHO05D005734 1.5e-182 643.7 521 62.4
Zm00001eb326730 Zea mays HOM05D004724 ORTHO05D005734 9.6e-182 641.0 593 60.0
DCAR_027471 Daucus carota HOM05D004724 ORTHO05D005734 1.3e-178 630.6 624 53.2
CiPaw.06G092100 Carya illinoinensis HOM05D004724 ORTHO05D005734 3.3e-174 615.9 648 55.4
VMungo1215G0095 Vigna mungo HOM05D004724 ORTHO05D005734 2.4e-172 609.8 613 53.0
SGA_v2.0_scaffold287G47167 Striga asiatica HOM05D004724 ORTHO05D005734 3.6e-152 542.7 511 56.4
CDE07G1937 Ceratophyllum demersum HOM05D004724 ORTHO05D005734 9.7e-134 481.5 445 64.7
SHI32884 Sapria himalayana HOM05D004724 ORTHO05D005734 4.8e-133 479.2 422 59.0
CSS0031560 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 3.1e-132 476.5 412 62.4
Solyc05g012390.4 Solanum lycopersicum HOM05D004724 ORTHO05D005734 1.2e-131 474.6 323 69.3
DCAR_027465 Daucus carota HOM05D004724 ORTHO05D005734 3.4e-126 456.4 337 65.6
CSS0025326 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 2.2e-125 453.8 411 60.8
CSS0020440 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 2.9e-122 443.4 366 64.8
CSS0043256 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 1.7e-117 427.6 411 57.7
CSS0003173 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 4.8e-117 426.0 389 59.9
Ah.02g126900 Amaranthus hybridus HOM05D004724 ORTHO05D005734 2.4e-116 423.7 446 54.7
CSS0034194 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 5.0e-114 416.0 412 56.8
CSS0037716 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 5.0e-114 416.0 412 57.3
CSS0030883 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 2.8e-109 400.2 377 58.6
SEGI_02789 Sequoiadendron giganteum HOM05D004724 ORTHO05D005734 2.0e-107 394.0 386 53.9
CSS0040633 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 4.9e-101 372.9 414 52.4
Cpa.g.sc1.117 Carica papaya HOM05D004724 ORTHO05D005734 1.1e-95 355.1 208 80.8
AagrBONN_evm.TU.Sc2ySwM_117.2858 Anthoceros agrestis HOM05D004724 ORTHO05D005734 4.0e-79 300.1 487 33.9
Mapoly0002s0313 Marchantia polymorpha HOM05D004724 ORTHO05D005734 5.2e-79 299.7 566 32.2
Nitab4.5_0011966g0020 Nicotiana tabacum HOM05D004724 ORTHO05D005734 1.3e-77 295.0 560 35.7
QL03p072489 Quercus lobata HOM05D000013 ORTHO05D000011 1.2e-67 261.9 210 65.2
Pp3c14_20030 Physcomitrium patens HOM05D004724 ORTHO05D005734 4.8e-64 250.0 502 30.7
SHI32882 Sapria himalayana HOM05D004724 ORTHO05D005734 9.0e-63 245.7 167 71.9
Pp3c1_28760 Physcomitrium patens HOM05D004724 ORTHO05D005734 9.9e-62 242.3 509 30.1
EL10Ac5g12464 Beta vulgaris HOM05D004724 ORTHO05D005734 1.9e-60 238.0 214 57.5
SHI32782 Sapria himalayana HOM05D004724 ORTHO05D005734 6.2e-56 223.0 165 66.1
GSVIVG01028487001 Vitis vinifera HOM05D004724 ORTHO05D005734 1.9e-49 201.4 237 49.4
GSVIVG01021735001 Vitis vinifera HOM05D004724 ORTHO05D005734 3.3e-49 200.7 237 49.4
CBR_g55790 Chara braunii HOM05D004724 ORTHO05D005734 5.0e-45 186.8 524 25.4
Actinidia32302 Actinidia chinensis HOM05D004724 ORTHO05D005734 4.6e-43 180.3 135 68.1
Actinidia32300 Actinidia chinensis HOM05D004724 ORTHO05D007268 1.8e-39 168.3 103 77.7
Gohir.D12G165033 Gossypium hirsutum HOM05D004724 ORTHO05D005734 3.0e-34 151.0 98 74.5
Medtr6g024415 Medicago truncatula HOM05D004724 ORTHO05D005734 1.1e-33 149.1 112 65.2
Ah.02g126910 Amaranthus hybridus HOM05D004724 ORTHO05D005734 5.7e-33 146.7 106 67.9
DCAR_027469 Daucus carota HOM05D004724 ORTHO05D005734 1.1e-28 132.5 210 40.5
Actinidia32301 Actinidia chinensis HOM05D004724 ORTHO05D005734 1.4e-28 132.1 97 64.9
QL03p072083 Quercus lobata HOM05D004724 ORTHO05D005734 1.6e-27 128.6 89 69.7
CDE07G0543 Ceratophyllum demersum HOM05D004724 ORTHO05D005734 2.6e-25 121.3 80 73.8
SEGI_03319 Sequoiadendron giganteum HOM05D004724 ORTHO05D005734 3.3e-25 120.9 96 58.3
C07p19370 Brassica napus HOM05D004724 ORTHO05D005734 3.7e-24 117.5 86 62.8
GSVIVG01009940001 Vitis vinifera HOM05D004724 ORTHO05D005734 1.0e-21 109.4 305 32.5
A07p12930 Brassica napus HOM05D004724 ORTHO05D005734 5.5e-20 103.6 69 68.1
BraA07t29066Z Brassica rapa HOM05D004724 ORTHO05D005734 5.5e-20 103.6 69 68.1
Medtr1g009040 Medicago truncatula HOM05D004724 ORTHO05D005734 1.8e-18 98.6 163 41.1
BolC7t42456H Brassica oleracea HOM05D004724 ORTHO05D005734 8.8e-18 96.3 69 65.2
Nn4g24499 Nelumbo nucifera HOM05D000723 ORTHO05D278618 2.0e-14 85.1 96 52.1
Hma1.2p1_0477F.1_g160970 Hydrangea macrophylla HOM05D004724 ORTHO05D005734 2.9e-13 81.3 45 75.6
Hma1.2p1_1953F.1_g308830 Hydrangea macrophylla HOM05D004724 ORTHO05D005734 2.9e-13 81.3 45 75.6
Hma1.2p1_0820F.1_g223970 Hydrangea macrophylla HOM05D004724 ORTHO05D005734 5.5e-12 77.0 48 70.8
BcaC06g35143 Brassica carinata HOM05D004724 ORTHO05D005734 2.6e-09 68.2 53 58.5
Ca_22573_v3 Cicer arietinum L. HOM05D000300 ORTHO05D008589 1.6e-06 58.9 232 27.2
Medtr1g066900 Medicago truncatula HOM05D000855 ORTHO05D008530 2.0e-06 58.5 131 27.5
TPR.G34661 Trifolium pratense HOM05D000300 ORTHO05D008589 2.7e-06 58.2 217 25.3
Dinv35708 Davidia involucrata HOM05D000855 ORTHO05D008530 3.5e-06 57.8 185 24.3
Phvul.003G063200 Phaseolus vulgaris HOM05D000300 ORTHO05D008589 4.5e-06 57.4 231 25.5
CsaV3_3G035530 Cucumis sativus L. HOM05D000855 ORTHO05D008530 7.7e-06 56.6 186 24.7


User provided reference genes

Program Settings