Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR622G0412 Trochodendron aralioides HOM05D004641 ORTHO05D005871 3.2e-159 565.1 293 100.0
TAR629G2466 Trochodendron aralioides HOM05D004641 ORTHO05D005871 5.0e-136 488.0 290 87.9
MBI05_g35443_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 6.9e-130 467.6 294 80.6
Nn3g17219 Nelumbo nucifera HOM05D004641 ORTHO05D005871 7.2e-127 457.6 292 80.8
Aqoxy3G03361 Aquilegia oxysepala HOM05D004641 ORTHO05D005871 2.2e-123 446.0 291 76.6
Aqoxy5G03781 Aquilegia oxysepala HOM05D004641 ORTHO05D005871 2.2e-120 436.0 291 75.9
GSVIVG01020002001 Vitis vinifera HOM05D004641 ORTHO05D005871 2.5e-119 432.6 295 79.0
PSO478G0089 Papaver somniferum HOM05D004641 ORTHO05D005871 2.1e-118 429.5 283 75.6
CSS0000565 Camellia sinensis var. sinensis HOM05D004641 ORTHO05D005871 3.6e-118 428.7 294 76.2
CSS0029182 Camellia sinensis var. sinensis HOM05D004641 ORTHO05D005871 6.1e-118 427.9 294 75.9
PSO017G4882 Papaver somniferum HOM05D004641 ORTHO05D005871 6.7e-117 424.5 283 75.3
Peaxi162Scf00541g00527 Petunia axillaris HOM05D004641 ORTHO05D005871 6.3e-115 417.9 286 75.5
Cpa.g.sc128.14 Carica papaya HOM05D004641 ORTHO05D005871 1.1e-114 417.2 293 74.7
Nitab4.5_0000703g0120 Nicotiana tabacum HOM05D004641 ORTHO05D005871 7.0e-114 414.5 286 74.8
COL.COLO4_22996 Corchorus olitorius HOM05D004641 ORTHO05D005871 9.1e-114 414.1 294 72.4
Actinidia04038 Actinidia chinensis HOM05D004641 ORTHO05D005871 1.6e-113 413.3 296 74.0
PGSC0003DMG400003384 Solanum tuberosum HOM05D004641 ORTHO05D005871 2.0e-113 412.9 286 74.1
Solyc05g007450.3 Solanum lycopersicum HOM05D004641 ORTHO05D005871 3.5e-113 412.1 286 73.8
Lj3A1038G72 Lonicera japonica HOM05D004641 ORTHO05D005871 5.9e-113 411.4 294 74.8
Duzib268G0036 Durio zibethinus HOM05D004641 ORTHO05D005871 1.7e-112 409.8 294 72.1
Sopen05g003330 Solanum pennellii HOM05D004641 ORTHO05D005871 3.8e-112 408.7 286 73.4
Gorai.013G084700 Gossypium raimondii HOM05D004641 ORTHO05D005871 2.5e-111 406.0 292 72.6
Potri.011G083700 Populus trichocarpa HOM05D004641 ORTHO05D005871 9.4e-111 404.1 293 71.7
Gohir.A13G074000 Gossypium hirsutum HOM05D004641 ORTHO05D005871 1.6e-110 403.3 292 72.3
Gohir.D13G074100 Gossypium hirsutum HOM05D004641 ORTHO05D005871 8.0e-110 401.0 292 71.9
TWI12G0809 Tripterygium wilfordii HOM05D004641 ORTHO05D005871 1.8e-109 399.8 294 70.7
CANSAT64G1560 Cannabis sativa HOM05D004641 ORTHO05D005871 2.3e-109 399.4 296 70.9
Ciclev10032310m.g Citrus clementina HOM05D004641 ORTHO05D005871 6.7e-109 397.9 293 68.3
Prupe.1G273100 Prunus persica HOM05D004641 ORTHO05D005871 8.8e-109 397.5 294 70.4
CiPaw.05G136500 Carya illinoinensis HOM05D004641 ORTHO05D005871 1.2e-108 397.1 294 70.4
Os07g0628600 Oryza sativa ssp. japonica HOM05D004641 ORTHO05D005871 1.2e-108 397.1 291 69.8
HPP92_016908 Vanilla planifolia HOM05D004641 ORTHO05D005871 1.5e-108 396.7 287 70.0
PGR102G3009 Punica granatum HOM05D004641 ORTHO05D005871 4.4e-108 395.2 292 69.5
Zm00001eb328260 Zea mays HOM05D004641 ORTHO05D005871 4.4e-108 395.2 284 69.4
CAN.G58.35 Capsicum annuum HOM05D004641 ORTHO05D005871 1.7e-107 393.3 286 70.3
Eucgr.B03435 Eucalyptus grandis HOM05D004641 ORTHO05D005871 1.4e-106 390.2 291 69.8
Oeu001572.1 Olea europaea HOM05D004641 ORTHO05D005871 4.1e-106 388.7 287 68.6
Phvul.002G086150 Phaseolus vulgaris HOM05D004641 ORTHO05D005871 5.3e-106 388.3 294 66.7
QL03p064370 Quercus lobata HOM05D004641 ORTHO05D005871 5.3e-106 388.3 293 71.0
Glyma.02G106600 Glycine max HOM05D004641 ORTHO05D005871 7.0e-106 387.9 293 66.6
Lalb_Chr10g0098211 Lupinus albus HOM05D004641 ORTHO05D005871 7.0e-106 387.9 293 67.6
Ca_24263_v3 Cicer arietinum L. HOM05D004641 ORTHO05D005871 1.2e-105 387.1 294 66.7
VMungo1215G3365 Vigna mungo HOM05D004641 ORTHO05D005871 2.0e-105 386.3 294 66.3
MSTRG.7808 Avicennia marina HOM05D004641 ORTHO05D005871 4.5e-105 385.2 289 68.9
Nitab4.5_0012364g0020 Nicotiana tabacum HOM05D004641 ORTHO05D005871 5.9e-105 384.8 286 69.9
Medtr7g039370 Medicago truncatula HOM05D004641 ORTHO05D005871 2.9e-104 382.5 294 66.0
SalBow2G2171 Salvia bowleyana HOM05D004641 ORTHO05D005871 2.9e-104 382.5 289 68.5
Medtr5g040250 Medicago truncatula HOM05D004641 ORTHO05D005871 5.0e-104 381.7 294 66.0
DCAR_007149 Daucus carota HOM05D004641 ORTHO05D005871 6.5e-104 381.3 296 69.9
Sabra11G0066400 Salix brachista HOM05D004641 ORTHO05D005871 1.1e-103 380.6 293 69.6
Cc11_g13100 Coffea canephora HOM05D004641 ORTHO05D005871 1.5e-103 380.2 287 66.9
Glyma.01G046400 Glycine max HOM05D004641 ORTHO05D005871 3.2e-103 379.0 293 64.8
FvH4_4g31460 Fragaria vesca HOM05D004641 ORTHO05D005871 4.7e-102 375.2 292 67.5
HanXRQChr12g0362561 Helianthus annuus HOM05D004641 ORTHO05D005871 6.1e-102 374.8 287 67.6
FAN22G2174 Fragaria x ananassa HOM05D004641 ORTHO05D005871 8.0e-102 374.4 293 67.2
Lj2g0007835 Lotus japonicus HOM05D004641 ORTHO05D005871 1.4e-101 373.6 294 66.3
Migut.L01304 Erythranthe guttata HOM05D004641 ORTHO05D005871 6.8e-101 371.3 285 68.1
Psat2g121160 Pisum sativum HOM05D004641 ORTHO05D005871 2.0e-100 369.8 294 65.0
RcHm_v2.0_Chr4g0439951 Rosa chinensis HOM05D004641 ORTHO05D005871 2.0e-100 369.8 289 67.1
MD13G1073100 Malus domestica HOM05D004641 ORTHO05D005871 3.4e-100 369.0 265 71.3
THA.LOC104822117 Tarenaya hassleriana HOM05D004641 ORTHO05D005871 5.7e-100 368.2 291 64.3
ClCG11G009310 Citrullus lanatus HOM05D004641 ORTHO05D005871 7.5e-100 367.9 287 66.6
CDE04G3358 Ceratophyllum demersum HOM05D004641 ORTHO05D005871 2.2e-99 366.3 294 65.3
Rhsim07G0243500 Rhododendron simsii HOM05D004641 ORTHO05D005871 4.8e-99 365.2 230 79.1
vmacro04307 Vaccinium macrocarpon HOM05D004641 ORTHO05D005871 1.4e-98 363.6 226 80.1
ECA233G1872 Erigeron canadensis HOM05D004641 ORTHO05D005871 5.4e-98 361.7 287 64.1
Aa31LG7G8260 Aethionema arabicum HOM05D004641 ORTHO05D005871 7.0e-98 361.3 290 63.8
arahy.Tifrunner.gnm1.ann1.K7EFN7 Arachis hypogaea HOM05D004641 ORTHO05D005871 7.0e-98 361.3 292 64.0
FAN17G1817 Fragaria x ananassa HOM05D004641 ORTHO05D005871 9.1e-98 360.9 303 64.4
Manes.01G186500 Manihot esculenta HOM05D004641 ORTHO05D005871 1.2e-97 360.5 226 79.6
CiPaw.06G083900 Carya illinoinensis HOM05D004641 ORTHO05D005871 2.0e-97 359.8 250 73.2
CARHR025060 Cardamine hirsuta HOM05D004641 ORTHO05D005871 2.7e-97 359.4 290 64.8
AUR62005767 Chenopodium quinoa HOM05D004641 ORTHO05D005871 5.9e-97 358.2 292 63.7
MELO3C008530.2 Cucumis melo HOM05D004641 ORTHO05D005871 5.9e-97 358.2 266 68.8
HanXRQChr08g0210501 Helianthus annuus HOM05D004641 ORTHO05D005871 7.7e-97 357.8 287 65.5
CsaV3_2G010800 Cucumis sativus L. HOM05D004641 ORTHO05D005871 1.0e-96 357.5 287 64.5
AL1G38720 Arabidopsis lyrata HOM05D004641 ORTHO05D005871 1.3e-96 357.1 290 64.5
AT1G26840 Arabidopsis thaliana HOM05D004641 ORTHO05D005871 2.3e-96 356.3 290 65.2
Thecc.02G351000 Theobroma cacao HOM05D004641 ORTHO05D005871 2.3e-96 356.3 227 78.4
Hund25250 Selenicereus undatus HOM05D004641 ORTHO05D005871 2.9e-96 355.9 292 62.7
FAN12G2116 Fragaria x ananassa HOM05D001668 ORTHO05D005871 3.8e-96 355.5 275 66.5
AUR62028790 Chenopodium quinoa HOM05D004641 ORTHO05D005871 8.6e-96 354.4 292 63.7
Haze_12020 Corylus avellana HOM05D004641 ORTHO05D005871 3.3e-95 352.4 294 65.0
BcaC05g26381 Brassica carinata HOM05D004641 ORTHO05D005871 4.2e-95 352.1 290 63.4
C05p24110 Brassica napus HOM05D004641 ORTHO05D005871 4.2e-95 352.1 290 63.4
BolC5t31146H Brassica oleracea HOM05D004641 ORTHO05D005871 4.2e-95 352.1 290 63.4
FAN07G1510 Fragaria x ananassa HOM05D004641 ORTHO05D005871 5.5e-95 351.7 275 66.5
Sc11g0001860 Simmondsia chinensis HOM05D004641 ORTHO05D005871 7.2e-95 351.3 294 62.6
Atru.chr11.1801 Acer truncatum HOM05D004641 ORTHO05D005871 9.5e-95 350.9 216 78.2
Sp1g21940 Schrenkiella parvula HOM05D004641 ORTHO05D005871 2.1e-94 349.7 290 63.1
BcaC07g39267 Brassica carinata HOM05D004641 ORTHO05D005871 6.1e-94 348.2 290 63.8
C08p22760 Brassica napus HOM05D004641 ORTHO05D005871 6.1e-94 348.2 290 63.8
BolC8t49912H Brassica oleracea HOM05D004641 ORTHO05D005871 6.1e-94 348.2 290 63.8
A09p40260 Brassica napus HOM05D004641 ORTHO05D005871 8.0e-94 347.8 285 63.5
BraA08t34696Z Brassica rapa HOM05D004641 ORTHO05D005871 8.0e-94 347.8 290 63.8
BraA09t39524Z Brassica rapa HOM05D004641 ORTHO05D005871 1.0e-93 347.4 282 63.5
SGA_v2.0_scaffold302G47825 Striga asiatica HOM05D004641 ORTHO05D005871 1.0e-93 347.4 285 65.3
EL10Ac6g13193 Beta vulgaris HOM05D004641 ORTHO05D005871 1.8e-93 346.7 326 57.7
Carub.0001s2410 Capsella rubella HOM05D004641 ORTHO05D005871 1.8e-93 346.7 283 63.3
A08p27580 Brassica napus HOM05D004641 ORTHO05D005871 3.0e-93 345.9 290 63.4
BcaB03g12011 Brassica carinata HOM05D004641 ORTHO05D005871 1.2e-92 344.0 290 62.8
arahy.Tifrunner.gnm1.ann1.ITG5Q4 Arachis hypogaea HOM05D004641 ORTHO05D005871 3.4e-92 342.4 292 61.6
ATR0800G170 Amborella trichopoda HOM05D004641 ORTHO05D005871 4.4e-92 342.0 239 72.0
Dinv16637 Davidia involucrata HOM05D004641 ORTHO05D005871 2.2e-91 339.7 224 78.1
Thhalv10008398m.g Eutrema salsugineum HOM05D004641 ORTHO05D005871 4.9e-91 338.6 288 61.5
Lalb_Chr17g0340601 Lupinus albus HOM05D004641 ORTHO05D005871 6.3e-91 338.2 251 68.5
Sed0021592 Sechium edule HOM05D004641 ORTHO05D005871 1.4e-90 337.0 286 62.9
Ah.03g135170 Amaranthus hybridus HOM05D004641 ORTHO05D005871 9.2e-90 334.3 293 60.8
SEGI_09090 Sequoiadendron giganteum HOM05D004641 ORTHO05D005871 1.6e-89 333.6 244 68.0
SGA_v2.0_scaffold53G19380 Striga asiatica HOM05D004641 ORTHO05D005871 2.3e-88 329.7 294 60.5
MD16G1074100 Malus domestica HOM05D004641 ORTHO05D005871 2.9e-88 329.3 281 63.0
Psat0s2466g0040 Pisum sativum HOM05D004641 ORTHO05D005871 8.0e-86 321.2 226 69.9
Sp5g24800 Schrenkiella parvula HOM05D004641 ORTHO05D005871 2.6e-84 316.2 258 62.4
Sed0002473 Sechium edule HOM05D004641 ORTHO05D005871 1.9e-82 310.1 243 65.4
Oeu054890.1 Olea europaea HOM05D004641 ORTHO05D005871 4.1e-82 308.9 226 69.9
Oeu054889.1 Olea europaea HOM05D004641 ORTHO05D005871 7.0e-82 308.1 226 69.9
AagrBONN_evm.TU.Sc2ySwM_228.4149 Anthoceros agrestis HOM05D004641 ORTHO05D005871 5.6e-79 298.5 304 50.0
CARHR062650 Cardamine hirsuta HOM05D004641 ORTHO05D005871 7.3e-79 298.1 241 62.7
Lsat_1_v5_gn_8_52860 Lactuca sativa HOM05D004641 ORTHO05D005871 2.3e-77 293.1 283 55.8
SHI55061 Sapria himalayana HOM05D004641 ORTHO05D005871 1.2e-76 290.8 238 63.4
MBI09_g01021_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 1.1e-74 284.3 215 71.6
Mapoly0064s0110 Marchantia polymorpha HOM05D004641 ORTHO05D005871 4.1e-74 282.3 262 54.6
Pp3c13_2030 Physcomitrium patens HOM05D004641 ORTHO05D005871 4.1e-74 282.3 289 50.2
MBI02_g14195_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 4.1e-66 255.8 224 64.7
CDE08G0800 Ceratophyllum demersum HOM05D004641 ORTHO05D005871 3.3e-63 246.1 262 55.3
MBI05_g01300_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 7.3e-63 245.0 237 59.9
SMO114G0050 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 6.4e-59 231.9 197 52.3
unitig_22.g6910 Utricularia gibba HOM05D004641 ORTHO05D005871 1.9e-58 230.3 287 49.5
SMO117G0352 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 5.4e-58 228.8 197 51.8
SMO254G0007 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 7.1e-58 228.4 197 51.3
SMO254G0005 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 1.6e-57 227.3 197 51.3
Gohir.A01G134350 Gossypium hirsutum HOM05D004641 ORTHO05D005871 7.3e-55 218.4 148 72.3
Gohir.A07G052500 Gossypium hirsutum HOM05D004641 ORTHO05D005871 4.8e-54 215.7 136 77.2
MBI10_g44256_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 3.2e-50 203.0 171 64.3
Gohir.A08G223448 Gossypium hirsutum HOM05D004641 ORTHO05D005871 9.6e-47 191.4 144 68.1
SMO254G0008 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 2.1e-46 190.3 197 44.7
CBR_g31088 Chara braunii HOM05D000019 ORTHO05D000048 9.3e-42 174.9 181 51.9
MBI10_g06043_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 3.4e-36 156.4 227 47.1
MBI10_g47167_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 1.0e-35 154.8 225 47.6
Thecc.03G087000 Theobroma cacao HOM05D004641 ORTHO05D005871 2.9e-35 153.3 119 68.9
SMO254G0011 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 7.4e-31 138.7 182 38.5
MD16G1073900 Malus domestica HOM05D004641 ORTHO05D005871 8.2e-30 135.2 83 78.3
SMO254G0019 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 5.3e-29 132.5 199 36.2
Cre06.g285650 Chlamydomonas reinhardtii HOM05D004641 ORTHO05D005871 3.4e-28 129.8 193 40.9
TPR.G37129 Trifolium pratense HOM05D004641 ORTHO05D005871 8.4e-27 125.2 76 75.0
C05p19510 Brassica napus HOM05D004641 ORTHO05D005871 1.6e-25 120.9 99 60.6
BolC5t30653H Brassica oleracea HOM05D004641 ORTHO05D005871 1.6e-25 120.9 99 60.6
PRCOL_00006308 Prasinoderma coloniale HOM05D004641 ORTHO05D005871 3.9e-24 116.3 218 32.6
MBI13_g45115_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 3.4e-20 103.2 58 82.8
MBI14_g27757_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 5.9e-20 102.4 58 81.0
MBI18_g33078_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 1.7e-19 100.9 57 80.7
MBI11_g16036_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 5.0e-19 99.4 58 79.3
MBI16_g45579_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 1.6e-17 94.4 65 72.3
MBI13_g16082_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 1.5e-15 87.8 54 77.8
CBR_g31090 Chara braunii HOM05D004641 ORTHO05D005871 2.5e-15 87.0 91 48.4
A10p02040 Brassica napus HOM05D000207 ORTHO05D013918 5.9e-12 75.9 51 64.7
A02p16560 Brassica napus HOM05D004641 ORTHO05D005871 3.9e-08 63.2 90 41.1
A09p47150 Brassica napus HOM05D004641 ORTHO05D022007 3.3e-07 60.1 60 53.3
BraA09t40177Z Brassica rapa HOM05D004641 ORTHO05D022007 3.3e-07 60.1 60 53.3
A09p29530 Brassica napus HOM05D004641 ORTHO05D022007 2.2e-06 57.4 61 49.2


User provided reference genes

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