Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR622G0369 Trochodendron aralioides HOM05D007169 ORTHO05D007243 4.2e-144 515.0 321 100.0
TAR374G1569 Trochodendron aralioides HOM05D007169 ORTHO05D007243 4.5e-98 362.1 286 71.7
TAR371G0734 Trochodendron aralioides HOM05D007169 ORTHO05D007243 4.5e-74 282.3 286 54.9
Nn3g16473 Nelumbo nucifera HOM05D007169 ORTHO05D007243 3.4e-69 266.2 286 51.7
Phvul.009G166500 Phaseolus vulgaris HOM05D007169 ORTHO05D007243 4.7e-63 245.7 242 51.7
Glyma.06G170200 Glycine max HOM05D007169 ORTHO05D007243 4.4e-61 239.2 251 48.6
Prupe.5G151300 Prunus persica HOM05D007169 ORTHO05D007243 2.4e-59 233.4 252 50.4
Lj1g0026378 Lotus japonicus HOM05D007169 ORTHO05D007243 1.1e-56 224.6 240 47.1
arahy.Tifrunner.gnm1.ann1.NVZ1RT Arachis hypogaea HOM05D007169 ORTHO05D007243 3.3e-56 223.0 245 47.3
arahy.Tifrunner.gnm1.ann1.ZT3MCZ Arachis hypogaea HOM05D007169 ORTHO05D007243 3.3e-56 223.0 245 47.3
TPR.G14220 Trifolium pratense HOM05D007169 ORTHO05D007243 3.3e-56 223.0 250 44.8
PSO478G3704 Papaver somniferum HOM05D007169 ORTHO05D007243 5.6e-56 222.2 248 46.0
VMungo1309G2045 Vigna mungo HOM05D007169 ORTHO05D007243 7.3e-56 221.9 160 64.4
PSO017G4677 Papaver somniferum HOM05D007169 ORTHO05D007243 2.1e-55 220.3 250 44.4
Ca_16044_v3 Cicer arietinum L. HOM05D007169 ORTHO05D007243 2.8e-55 219.9 250 46.4
Hma1.2p1_0014F.1_g009470 Hydrangea macrophylla HOM05D007169 ORTHO05D007243 1.0e-54 218.0 250 47.6
Psat5g051240 Pisum sativum HOM05D007169 ORTHO05D007243 1.4e-54 217.6 251 45.4
Potri.012G097500 Populus trichocarpa HOM05D007169 ORTHO05D007243 1.4e-54 217.6 245 47.8
Sabra15G0116800 Salix brachista HOM05D007169 ORTHO05D007243 1.8e-54 217.2 248 48.0
ClCG03G003730 Citrullus lanatus HOM05D007169 ORTHO05D007243 6.8e-54 215.3 253 48.2
Thecc.03G128900 Theobroma cacao HOM05D007169 ORTHO05D007243 8.9e-54 214.9 246 47.2
CiPaw.12G042700 Carya illinoinensis HOM05D007169 ORTHO05D007243 1.2e-53 214.5 252 46.0
MELO3C002358.2 Cucumis melo HOM05D007169 ORTHO05D007243 2.0e-53 213.8 255 47.8
Duzib068G0521 Durio zibethinus HOM05D007169 ORTHO05D007243 2.0e-53 213.8 246 47.2
Potri.015G096000 Populus trichocarpa HOM05D007169 ORTHO05D007243 2.0e-53 213.8 246 47.2
CsaV3_1G009620 Cucumis sativus L. HOM05D007169 ORTHO05D007243 2.6e-53 213.4 252 48.0
Gohir.D09G247400 Gossypium hirsutum HOM05D007169 ORTHO05D007243 1.3e-52 211.1 253 45.5
Gorai.006G271900 Gossypium raimondii HOM05D007169 ORTHO05D007243 1.3e-52 211.1 253 45.5
Manes.01G190300 Manihot esculenta HOM05D007169 ORTHO05D007243 1.3e-52 211.1 244 45.5
RhsimUnG0231000 Rhododendron simsii HOM05D007169 ORTHO05D007243 1.3e-52 211.1 242 44.6
Aqoxy3G00802 Aquilegia oxysepala HOM05D007169 ORTHO05D007243 2.9e-52 209.9 264 45.8
GSVIVG01008542001 Vitis vinifera HOM05D003858 ORTHO05D005878 4.9e-52 209.1 252 46.4
Gohir.A09G246900 Gossypium hirsutum HOM05D007169 ORTHO05D007243 6.4e-52 208.8 253 44.7
Medtr3g099350 Medicago truncatula HOM05D007169 ORTHO05D007243 8.3e-52 208.4 253 42.7
Cpa.g.sc13.118 Carica papaya HOM05D007169 ORTHO05D007243 3.2e-51 206.5 255 45.9
Lalb_Chr08g0237141 Lupinus albus HOM05D007169 ORTHO05D007243 3.2e-51 206.5 251 41.8
QL10p002966 Quercus lobata HOM05D007169 ORTHO05D007243 4.1e-51 206.1 251 45.8
Cfa018798 Carpinus fangiana HOM05D007169 ORTHO05D007243 2.7e-50 203.4 170 58.8
Dinv23144 Davidia involucrata HOM05D007169 ORTHO05D007243 6.0e-50 202.2 171 58.5
RcHm_v2.0_Chr7g0190221 Rosa chinensis HOM05D007169 ORTHO05D007243 1.0e-49 201.4 166 57.8
CANSAT80G1416 Cannabis sativa HOM05D007169 ORTHO05D007243 2.3e-49 200.3 247 49.8
Haze_07134 Corylus avellana HOM05D007169 ORTHO05D007243 2.3e-49 200.3 170 58.2
Ciclev10018838m.g Citrus clementina HOM05D003858 ORTHO05D005878 3.0e-49 199.9 246 43.9
TWI23G0849 Tripterygium wilfordii HOM05D007169 ORTHO05D007243 3.0e-49 199.9 256 44.9
Medtr2g045120 Medicago truncatula HOM05D007169 ORTHO05D007243 3.9e-49 199.5 168 54.8
Medtr2g445400 Medicago truncatula HOM05D007169 ORTHO05D007243 3.9e-49 199.5 168 54.8
Eucgr.K02727 Eucalyptus grandis HOM05D007169 ORTHO05D007243 5.0e-49 199.1 254 42.9
FvH4_5g08300 Fragaria vesca HOM05D007169 ORTHO05D007243 5.0e-49 199.1 244 43.0
Sed0005692 Sechium edule HOM05D007169 ORTHO05D007243 5.6e-48 195.7 248 44.0
Atru.chr9.1127 Acer truncatum HOM05D007169 ORTHO05D007243 9.5e-48 194.9 244 43.9
PGR044G0546 Punica granatum HOM05D007169 ORTHO05D007243 1.2e-47 194.5 251 41.8
FAN04G2393 Fragaria x ananassa HOM05D007169 ORTHO05D007243 6.2e-47 192.2 163 57.1
Sed0023866 Sechium edule HOM05D007169 ORTHO05D007243 1.1e-46 191.4 251 43.8
Gorai.004G276100 Gossypium raimondii HOM05D007169 ORTHO05D007243 2.3e-46 190.3 245 43.7
CANSAT80G0844 Cannabis sativa HOM05D007169 ORTHO05D007243 4.0e-46 189.5 151 62.3
FAN18G0310 Fragaria x ananassa HOM05D007169 ORTHO05D007243 4.0e-46 189.5 161 57.1
Rhsim08G0190100 Rhododendron simsii HOM05D007169 ORTHO05D007243 6.8e-46 188.7 167 52.7
Gohir.D08G258666 Gossypium hirsutum HOM05D007169 ORTHO05D007243 7.5e-45 185.3 155 59.4
Lalb_Chr23g0273701 Lupinus albus HOM05D007169 ORTHO05D007243 9.8e-45 184.9 155 59.4
ATR0561G062 Amborella trichopoda HOM05D011398 ORTHO05D007243 1.7e-44 184.1 244 39.8
MD14G1157400 Malus domestica HOM05D007169 ORTHO05D007243 8.3e-44 181.8 259 40.9
DCAR_016391 Daucus carota HOM05D007169 ORTHO05D007243 2.4e-43 180.3 151 55.6
MD06G1142100 Malus domestica HOM05D007169 ORTHO05D007243 7.1e-43 178.7 255 40.8
DCAR_021617 Daucus carota HOM05D007169 ORTHO05D007243 1.7e-41 174.1 245 41.2
Actinidia18344 Actinidia chinensis HOM05D007169 ORTHO05D007243 3.3e-40 169.9 178 47.8
Lj5A96T48 Lonicera japonica HOM05D007169 ORTHO05D007243 3.3e-40 169.9 143 55.9
Sp6g12560 Schrenkiella parvula HOM05D007169 ORTHO05D007243 9.5e-40 168.3 167 52.7
SpUn0015_0080 Schrenkiella parvula HOM05D007169 ORTHO05D007243 9.5e-40 168.3 167 52.7
SpUn0039_0020 Schrenkiella parvula HOM05D007169 ORTHO05D007243 9.5e-40 168.3 167 52.7
Sc04g0000670 Simmondsia chinensis HOM05D007169 ORTHO05D007243 9.5e-40 168.3 256 39.5
vmacro07808 Vaccinium macrocarpon HOM05D007169 ORTHO05D007243 1.2e-39 167.9 203 44.3
Aa31LG3G6930 Aethionema arabicum HOM05D007169 ORTHO05D007243 1.6e-39 167.5 167 52.7
Thhalv10014456m.g Eutrema salsugineum HOM05D007169 ORTHO05D007243 4.7e-39 166.0 168 51.2
Lsat_1_v5_gn_1_28980 Lactuca sativa HOM05D007169 ORTHO05D007243 1.1e-38 164.9 243 40.3
C02p20850 Brassica napus HOM05D007169 ORTHO05D007243 1.8e-38 164.1 172 48.8
Carub.0008s1052 Capsella rubella HOM05D007169 ORTHO05D007243 1.8e-38 164.1 168 51.8
BcaB05g24052 Brassica carinata HOM05D007169 ORTHO05D007243 3.1e-38 163.3 174 48.9
BolC2t08225H Brassica oleracea HOM05D007169 ORTHO05D007243 3.1e-38 163.3 172 48.8
BcaC03g14651 Brassica carinata HOM05D007169 ORTHO05D007243 4.0e-38 162.9 172 48.8
HanXRQChr02g0034741 Helianthus annuus HOM05D007169 ORTHO05D007243 5.2e-38 162.5 241 37.8
AT5G50410 Arabidopsis thaliana HOM05D007169 ORTHO05D007243 6.8e-38 162.2 166 50.0
THA.LOC104803148 Tarenaya hassleriana HOM05D007169 ORTHO05D007243 6.8e-38 162.2 161 52.8
A02p12790 Brassica napus HOM05D007169 ORTHO05D007243 8.9e-38 161.8 172 48.3
BraA02t06336Z Brassica rapa HOM05D007169 ORTHO05D007243 8.9e-38 161.8 172 48.3
AL8G24630 Arabidopsis lyrata HOM05D007169 ORTHO05D007243 1.2e-37 161.4 166 50.0
CSS0048648 Camellia sinensis var. sinensis HOM05D007169 ORTHO05D007243 1.2e-37 161.4 179 46.4
HPP92_011770 Vanilla planifolia HOM05D007169 ORTHO05D007243 1.2e-37 161.4 268 37.3
Gorai.008G206100 Gossypium raimondii HOM05D007169 ORTHO05D007243 5.8e-37 159.1 249 37.3
Gohir.D12G191801 Gossypium hirsutum HOM05D007169 ORTHO05D007243 9.9e-37 158.3 249 36.9
HPP92_011766 Vanilla planifolia HOM05D007169 ORTHO05D007243 3.7e-36 156.4 174 46.6
ECA247G3219 Erigeron canadensis HOM05D007169 ORTHO05D007243 1.6e-31 141.0 152 49.3
AUR62029615 Chenopodium quinoa HOM05D007169 ORTHO05D007243 3.1e-30 136.7 179 42.5
FAN08G0105 Fragaria x ananassa HOM05D007169 ORTHO05D007243 3.1e-30 136.7 127 52.8
EL10Ac5g11418 Beta vulgaris HOM05D007169 ORTHO05D007243 8.9e-30 135.2 177 42.4
SalBow5G4624 Salvia bowleyana HOM05D007169 ORTHO05D007243 1.9e-27 127.5 176 38.6
Cc06_g22780 Coffea canephora HOM05D007169 ORTHO05D007243 2.4e-27 127.1 166 42.8
CAN.G338.2 Capsicum annuum HOM05D007169 ORTHO05D007243 7.1e-27 125.6 84 70.2
SalBow5G3517 Salvia bowleyana HOM05D007169 ORTHO05D007243 9.3e-27 125.2 176 38.1
MSTRG.11390 Avicennia marina HOM05D007169 ORTHO05D007243 2.1e-26 124.0 98 58.2
unitig_0.g2530 Utricularia gibba HOM05D007169 ORTHO05D007243 1.0e-25 121.7 97 57.7
Peaxi162Scf00089g01624 Petunia axillaris HOM05D007169 ORTHO05D007243 1.7e-25 120.9 72 76.4
Os08g0531200 Oryza sativa ssp. japonica HOM05D011398 ORTHO05D007243 2.3e-25 120.6 173 41.0
Solyc03g112570.2 Solanum lycopersicum HOM05D007169 ORTHO05D007243 3.0e-25 120.2 72 76.4
Sopen03g031630 Solanum pennellii HOM05D007169 ORTHO05D007243 3.0e-25 120.2 72 76.4
PGSC0003DMG400018172 Solanum tuberosum HOM05D007169 ORTHO05D007243 3.0e-25 120.2 72 76.4
Hund26053 Selenicereus undatus HOM05D007169 ORTHO05D007243 3.9e-25 119.8 206 38.8
Migut.I00155 Erythranthe guttata HOM05D007169 ORTHO05D007243 6.6e-25 119.0 176 38.1
Ah.02g111120 Amaranthus hybridus HOM05D007169 ORTHO05D007243 8.7e-25 118.6 96 64.6
Oeu006492.1 Olea europaea HOM05D007169 ORTHO05D007243 2.5e-24 117.1 70 70.0
SEGI_24222 Sequoiadendron giganteum HOM05D007169 ORTHO05D007243 3.3e-24 116.7 91 54.9
SGA_v2.0_scaffold56G20032 Striga asiatica HOM05D007169 ORTHO05D007243 7.3e-24 115.5 70 70.0
Zm00001eb175120 Zea mays HOM05D011398 ORTHO05D007243 7.3e-24 115.5 151 41.1
COL.COLO4_28120 Corchorus olitorius HOM05D007169 ORTHO05D007243 1.6e-23 114.4 112 51.8
CARHR257950 Cardamine hirsuta HOM05D007169 ORTHO05D007243 3.1e-22 110.2 121 47.9
Nitab4.5_0011992g0030 Nicotiana tabacum HOM05D007169 ORTHO05D007243 7.6e-21 105.5 64 75.0
arahy.Tifrunner.gnm1.ann1.M1N3UH Arachis hypogaea HOM05D002218 ORTHO05D007243 2.2e-20 104.0 69 65.2
Sabra12G0071300 Salix brachista HOM05D000677 ORTHO05D000727 1.1e-19 101.7 127 44.9
Mapoly0022s0039 Marchantia polymorpha HOM05D011398 ORTHO05D007243 7.1e-11 72.4 79 39.2
CBR_g46730 Chara braunii HOM05D011398 ORTHO05D007243 3.5e-10 70.1 87 42.5
CBR_g30247 Chara braunii HOM05D011398 ORTHO05D007243 1.3e-07 61.6 88 36.4


User provided reference genes

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