Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR622G0172 Trochodendron aralioides HOM05D004542 ORTHO05D005380 2.2e-75 285.4 135 100.0
TWI09G1372 Tripterygium wilfordii HOM05D004542 ORTHO05D005380 1.6e-41 172.9 133 63.2
TWI73G0467 Tripterygium wilfordii HOM05D004542 ORTHO05D005380 3.6e-41 171.8 137 62.8
Aqoxy3G03464 Aquilegia oxysepala HOM05D004542 ORTHO05D005380 6.2e-41 171.0 132 62.1
Nn3g17306 Nelumbo nucifera HOM05D004542 ORTHO05D005380 8.1e-41 170.6 133 61.7
Duzib251G0803 Durio zibethinus HOM05D004542 ORTHO05D005380 1.4e-40 169.9 140 60.0
Dinv07945 Davidia involucrata HOM05D004542 ORTHO05D005380 3.1e-40 168.7 132 65.9
Nn3g18387 Nelumbo nucifera HOM05D004542 ORTHO05D005380 4.0e-40 168.3 133 60.9
Duzib248G0510 Durio zibethinus HOM05D004542 ORTHO05D005380 1.5e-39 166.4 140 60.0
PSO063G3361 Papaver somniferum HOM05D004542 ORTHO05D005380 4.4e-39 164.9 126 62.7
Potri.010G165100 Populus trichocarpa HOM05D004542 ORTHO05D005380 4.4e-39 164.9 122 65.6
CSS0014017 Camellia sinensis var. sinensis HOM05D004542 ORTHO05D005380 5.8e-39 164.5 140 60.7
CSS0031140 Camellia sinensis var. sinensis HOM05D004542 ORTHO05D005380 5.8e-39 164.5 140 60.7
THA.LOC104808670 Tarenaya hassleriana HOM05D004542 ORTHO05D005380 9.9e-39 163.7 137 57.7
RcHm_v2.0_Chr4g0415001 Rosa chinensis HOM05D004542 ORTHO05D005380 2.2e-38 162.5 133 60.2
Manes.01G033600 Manihot esculenta HOM05D004542 ORTHO05D005380 2.9e-38 162.2 138 60.1
Prupe.1G009500 Prunus persica HOM05D004542 ORTHO05D005380 4.9e-38 161.4 136 59.6
Potri.008G090100 Populus trichocarpa HOM05D004542 ORTHO05D005380 8.4e-38 160.6 125 65.6
CiPaw.06G087700 Carya illinoinensis HOM05D004542 ORTHO05D005380 1.1e-37 160.2 125 62.4
MBI02_g20485_MAGBIO Magnolia biondii HOM05D004542 ORTHO05D005380 1.4e-37 159.8 128 60.2
Thecc.02G341300 Theobroma cacao HOM05D004542 ORTHO05D005380 1.4e-37 159.8 140 57.9
CANSAT21G2357 Cannabis sativa HOM05D004542 ORTHO05D005380 2.4e-37 159.1 138 61.6
Cfa004898 Carpinus fangiana HOM05D004542 ORTHO05D005380 3.2e-37 158.7 132 62.1
Actinidia31969 Actinidia chinensis HOM05D004542 ORTHO05D005380 9.2e-37 157.1 139 57.6
THA.LOC104822040 Tarenaya hassleriana HOM05D004542 ORTHO05D005380 1.2e-36 156.8 138 59.4
Ciclev10033055m.g Citrus clementina HOM05D004542 ORTHO05D005380 1.6e-36 156.4 129 58.9
Actinidia17747 Actinidia chinensis HOM05D004542 ORTHO05D005380 2.7e-36 155.6 139 58.3
Cpa.g.sc69.70 Carica papaya HOM05D004542 ORTHO05D005380 3.5e-36 155.2 137 56.9
PGR083G2602 Punica granatum HOM05D004542 ORTHO05D005380 7.8e-36 154.1 132 59.8
Aa31LG7G8390 Aethionema arabicum HOM05D004542 ORTHO05D005380 1.0e-35 153.7 137 56.9
Atru.chr11.1738 Acer truncatum HOM05D004542 ORTHO05D005380 1.3e-35 153.3 130 59.2
Carub.0001s2428 Capsella rubella HOM05D004542 ORTHO05D005380 3.0e-35 152.1 120 60.0
FvH4_4g13880 Fragaria vesca HOM05D004542 ORTHO05D005380 3.0e-35 152.1 130 56.2
FAN12G3669 Fragaria x ananassa HOM05D004542 ORTHO05D005380 3.0e-35 152.1 130 56.2
RcHm_v2.0_Chr4g0414951 Rosa chinensis HOM05D004542 ORTHO05D005380 3.0e-35 152.1 135 57.0
FAN07G0300 Fragaria x ananassa HOM05D004542 ORTHO05D005380 6.6e-35 151.0 133 56.4
QL05p050003 Quercus lobata HOM05D004542 ORTHO05D005380 1.1e-34 150.2 137 60.6
MD04G1010200 Malus domestica HOM05D004542 ORTHO05D005380 4.3e-34 148.3 136 56.6
A07p13070 Brassica napus HOM05D004542 ORTHO05D005380 5.6e-34 147.9 120 59.2
C07p19550 Brassica napus HOM05D004542 ORTHO05D005380 5.6e-34 147.9 118 59.3
BolC7t42472H Brassica oleracea HOM05D004542 ORTHO05D005380 5.6e-34 147.9 118 59.3
Cpa.g.sc57.38 Carica papaya HOM05D004542 ORTHO05D005380 5.6e-34 147.9 116 62.1
Gohir.D07G052100 Gossypium hirsutum HOM05D004542 ORTHO05D005380 7.3e-34 147.5 144 54.2
BcaB03g14086 Brassica carinata HOM05D004542 ORTHO05D005380 9.6e-34 147.1 116 58.6
Gohir.A07G047800 Gossypium hirsutum HOM05D004542 ORTHO05D005380 9.6e-34 147.1 144 56.9
BcaC06g35127 Brassica carinata HOM05D004542 ORTHO05D005380 1.2e-33 146.7 118 59.3
Gorai.001G055100 Gossypium raimondii HOM05D004542 ORTHO05D005380 1.2e-33 146.7 146 53.4
Sabra08G0067500 Salix brachista HOM05D004542 ORTHO05D005380 1.2e-33 146.7 136 58.1
CDE04G0708 Ceratophyllum demersum HOM05D004542 ORTHO05D005380 2.1e-33 146.0 129 56.6
FAN22G1961 Fragaria x ananassa HOM05D004542 ORTHO05D005380 2.8e-33 145.6 133 55.6
BraA07t29078Z Brassica rapa HOM05D004542 ORTHO05D005380 4.7e-33 144.8 120 57.5
Solyc04g005590.3 Solanum lycopersicum HOM05D004542 ORTHO05D005380 4.7e-33 144.8 135 55.6
AL1G38970 Arabidopsis lyrata HOM05D004542 ORTHO05D005380 6.2e-33 144.4 116 59.5
AT1G26740 Arabidopsis thaliana HOM05D004542 ORTHO05D005380 6.2e-33 144.4 111 61.3
Sopen04g001630 Solanum pennellii HOM05D004542 ORTHO05D005380 6.2e-33 144.4 129 58.1
CARHR025220 Cardamine hirsuta HOM05D004542 ORTHO05D005380 1.8e-32 142.9 111 62.2
Cc00_g16630 Coffea canephora HOM05D004542 ORTHO05D005380 1.8e-32 142.9 135 57.0
Nitab4.5_0000391g0330 Nicotiana tabacum HOM05D004542 ORTHO05D005380 2.4e-32 142.5 129 58.1
Peaxi162Scf00222g00329 Petunia axillaris HOM05D004542 ORTHO05D005380 5.2e-32 141.4 135 57.8
Thhalv10009076m.g Eutrema salsugineum HOM05D004542 ORTHO05D005380 6.9e-32 141.0 119 58.0
Sp5g24560 Schrenkiella parvula HOM05D004542 ORTHO05D005380 8.9e-32 140.6 119 58.8
PGSC0003DMG400002854 Solanum tuberosum HOM05D004542 ORTHO05D005380 1.2e-31 140.2 135 54.8
RcHm_v2.0_Chr6g0251041 Rosa chinensis HOM05D004542 ORTHO05D005380 1.5e-31 139.8 127 58.3
C05p24230 Brassica napus HOM05D004542 ORTHO05D005380 2.6e-31 139.0 118 55.9
BolC5t31159H Brassica oleracea HOM05D004542 ORTHO05D005380 2.6e-31 139.0 118 55.9
Sc14g0007580 Simmondsia chinensis HOM05D004542 ORTHO05D005380 4.4e-31 138.3 132 56.8
Peaxi162Scf00023g02531 Petunia axillaris HOM05D004542 ORTHO05D005380 5.8e-31 137.9 133 57.1
Migut.L01259 Erythranthe guttata HOM05D004542 ORTHO05D005380 7.6e-31 137.5 136 54.4
Sc03g0001820 Simmondsia chinensis HOM05D004542 ORTHO05D005380 1.7e-30 136.3 122 57.4
BcaC05g26392 Brassica carinata HOM05D004542 ORTHO05D005380 2.2e-30 136.0 118 55.1
AL2G28600 Arabidopsis lyrata HOM05D004542 ORTHO05D005380 2.9e-30 135.6 118 57.6
MSTRG.2336 Avicennia marina HOM05D004542 ORTHO05D005380 2.9e-30 135.6 128 57.8
BraA09t39513Z Brassica rapa HOM05D004542 ORTHO05D005380 2.9e-30 135.6 118 54.2
Ca_18347_v3 Cicer arietinum L. HOM05D004542 ORTHO05D005380 3.8e-30 135.2 134 54.5
EL10Ac2g02750 Beta vulgaris HOM05D004542 ORTHO05D005380 4.9e-30 134.8 119 57.1
Eucgr.D00185 Eucalyptus grandis HOM05D004542 ORTHO05D005380 6.4e-30 134.4 119 58.8
A09p40150 Brassica napus HOM05D004542 ORTHO05D005380 8.4e-30 134.0 118 53.4
ClCG05G024060 Citrullus lanatus HOM05D004542 ORTHO05D005380 8.4e-30 134.0 137 51.8
Nitab4.5_0013306g0010 Nicotiana tabacum HOM05D004542 ORTHO05D005380 8.4e-30 134.0 133 56.4
Psat0s1693g0080 Pisum sativum HOM05D004542 ORTHO05D005380 8.4e-30 134.0 136 53.7
CDE07G0585 Ceratophyllum demersum HOM05D004542 ORTHO05D005380 1.9e-29 132.9 129 51.9
AUR62031723 Chenopodium quinoa HOM05D004542 ORTHO05D005380 1.9e-29 132.9 136 50.7
Lalb_Chr10g0097781 Lupinus albus HOM05D004542 ORTHO05D005380 2.4e-29 132.5 119 58.0
Sopen05g007930 Solanum pennellii HOM05D004542 ORTHO05D005380 5.4e-29 131.3 138 55.8
TPR.G5742 Trifolium pratense HOM05D004542 ORTHO05D005380 7.1e-29 131.0 122 57.4
VMungo0251G2924 Vigna mungo HOM05D004542 ORTHO05D005380 7.1e-29 131.0 137 53.3
Glyma.05G118100 Glycine max HOM05D004542 ORTHO05D005380 9.3e-29 130.6 136 52.9
Lsat_1_v5_gn_8_48901 Lactuca sativa HOM05D004542 ORTHO05D005380 1.2e-28 130.2 119 56.3
Phvul.002G208200 Phaseolus vulgaris HOM05D004542 ORTHO05D005380 1.6e-28 129.8 137 54.0
Glyma.08G073000 Glycine max HOM05D004542 ORTHO05D005380 2.7e-28 129.0 136 52.2
HanXRQChr12g0361941 Helianthus annuus HOM05D004542 ORTHO05D005380 3.5e-28 128.6 114 60.5
ECA233G6069 Erigeron canadensis HOM05D004542 ORTHO05D005380 4.6e-28 128.3 120 59.2
SalBow1G8597 Salvia bowleyana HOM05D004542 ORTHO05D005380 6.0e-28 127.9 115 58.3
Hma1.2p1_0357F.1_g134240 Hydrangea macrophylla HOM05D004542 ORTHO05D005380 7.8e-28 127.5 68 86.8
Solyc05g013190.4 Solanum lycopersicum HOM05D004542 ORTHO05D005380 1.0e-27 127.1 137 54.7
Sed0021036 Sechium edule HOM05D004542 ORTHO05D005380 1.7e-27 126.3 126 52.4
arahy.Tifrunner.gnm1.ann1.53F0XR Arachis hypogaea HOM05D004542 ORTHO05D005380 2.3e-27 125.9 119 54.6
arahy.Tifrunner.gnm1.ann1.H527P9 Arachis hypogaea HOM05D004542 ORTHO05D005380 2.3e-27 125.9 119 54.6
Ah.08g212630 Amaranthus hybridus HOM05D004542 ORTHO05D005380 3.0e-27 125.6 111 58.6
CsaV3_5G032980 Cucumis sativus L. HOM05D004542 ORTHO05D005380 8.7e-27 124.0 137 48.2
Medtr1g025320 Medicago truncatula HOM05D004542 ORTHO05D005380 8.7e-27 124.0 126 54.8
MELO3C012119.2 Cucumis melo HOM05D004542 ORTHO05D005380 1.1e-26 123.6 137 51.1
Oeu001710.1 Olea europaea HOM05D004542 ORTHO05D005380 1.5e-26 123.2 109 56.9
Glyma.06G320500 Glycine max HOM05D004542 ORTHO05D005380 3.3e-26 122.1 131 52.7
DCAR_027429 Daucus carota HOM05D004542 ORTHO05D005380 4.3e-26 121.7 190 42.1
Lj4g0012875 Lotus japonicus HOM05D004542 ORTHO05D005380 9.6e-26 120.6 128 53.9
SalBow1G7833 Salvia bowleyana HOM05D004542 ORTHO05D005380 2.1e-25 119.4 115 55.7
HanXRQChr15g0476941 Helianthus annuus HOM05D004542 ORTHO05D005380 3.6e-25 118.6 138 51.4
ECA246G0207 Erigeron canadensis HOM05D004542 ORTHO05D005380 4.8e-25 118.2 140 47.1
PSO782G1969 Papaver somniferum HOM05D004542 ORTHO05D005380 6.2e-25 117.9 103 58.3
Hund04421 Selenicereus undatus HOM05D004542 ORTHO05D005380 8.1e-25 117.5 107 57.9
Lj4g0007672 Lotus japonicus HOM05D004542 ORTHO05D005380 2.4e-24 115.9 128 52.3
SalBow1G4390 Salvia bowleyana HOM05D004542 ORTHO05D005380 4.0e-24 115.2 129 51.2
AUR62032610 Chenopodium quinoa HOM05D004542 ORTHO05D005380 5.3e-24 114.8 170 40.0
SGA_v2.0_scaffold455G51899 Striga asiatica HOM05D004542 ORTHO05D005380 9.0e-24 114.0 117 53.8
Nitab4.5_0001077g0020 Nicotiana tabacum HOM05D004542 ORTHO05D005380 2.0e-23 112.8 153 47.1
Ciclev10013639m.g Citrus clementina HOM05D004542 ORTHO05D005380 4.5e-23 111.7 132 47.0
CANSAT21G0056 Cannabis sativa HOM05D004542 ORTHO05D005380 5.8e-23 111.3 110 57.3
TPR.G8852 Trifolium pratense HOM05D004542 ORTHO05D005380 5.8e-23 111.3 57 82.5
Haze_11968 Corylus avellana HOM05D004542 ORTHO05D005380 7.6e-23 110.9 105 58.1
Os03g0168900 Oryza sativa ssp. japonica HOM05D004542 ORTHO05D005380 7.6e-23 110.9 111 49.5
COL.COLO4_32021 Corchorus olitorius HOM05D004542 ORTHO05D005380 9.9e-23 110.5 106 55.7
AT1G69485 Arabidopsis thaliana HOM05D004542 ORTHO05D005380 2.2e-22 109.4 61 77.0
Os10g0407100 Oryza sativa ssp. japonica HOM05D004542 ORTHO05D005380 2.9e-22 109.0 61 73.8
Manes.05G105400 Manihot esculenta HOM05D004542 ORTHO05D005380 4.9e-22 108.2 112 50.0
Zm00001eb402400 Zea mays HOM05D004542 ORTHO05D005380 1.9e-21 106.3 63 71.4
Sp1g22070 Schrenkiella parvula HOM05D004542 ORTHO05D005380 5.4e-21 104.8 93 57.0
SalBow1G1756 Salvia bowleyana HOM05D004542 ORTHO05D005380 9.3e-21 104.0 60 76.7
Oeu054854.1 Olea europaea HOM05D004542 ORTHO05D005380 7.9e-20 100.9 108 54.6
MBI02_g44667_MAGBIO Magnolia biondii HOM05D004542 ORTHO05D005380 1.0e-19 100.5 96 55.2
Sopen03g017060 Solanum pennellii HOM05D004542 ORTHO05D005380 2.3e-19 99.4 63 71.4
Rhsim05G0092000 Rhododendron simsii HOM05D004542 ORTHO05D005380 5.1e-19 98.2 112 50.9
RhsimUnG0183400 Rhododendron simsii HOM05D004542 ORTHO05D005380 5.1e-19 98.2 112 50.9
Carub.0002s1610 Capsella rubella HOM05D004542 ORTHO05D005380 1.4e-16 90.1 51 72.5
MD13G1284400 Malus domestica HOM05D002269 ORTHO05D005380 4.5e-15 85.1 164 36.0
Mapoly0152s0024 Marchantia polymorpha HOM05D004542 ORTHO05D005380 2.9e-14 82.4 51 68.6
Pp3c1_32410 Physcomitrium patens HOM05D004542 ORTHO05D005380 4.9e-14 81.6 52 67.3
Nitab4.5_0000014g0150 Nicotiana tabacum HOM05D004542 ORTHO05D005380 1.1e-13 80.5 146 39.0
CBR_g23146 Chara braunii HOM05D004542 ORTHO05D005380 1.9e-13 79.7 50 64.0
Glyma.04G115800 Glycine max HOM05D004542 ORTHO05D005380 1.9e-13 79.7 103 50.5
AagrBONN_evm.TU.Sc2ySwM_228.5417 Anthoceros agrestis HOM05D004542 ORTHO05D005380 3.2e-13 79.0 54 66.7
Sabra10G0125700 Salix brachista HOM05D004542 ORTHO05D005380 1.2e-12 77.0 77 51.9
SMO358G0607 Selaginella moellendorffii HOM05D000228 ORTHO05D005112 7.9e-12 74.3 49 63.3
COL.COLO4_27991 Corchorus olitorius HOM05D004542 ORTHO05D005380 3.0e-11 72.4 104 49.0
Zm00001eb005320 Zea mays HOM05D004542 ORTHO05D005380 2.5e-10 69.3 73 50.7
SEGI_34151 Sequoiadendron giganteum HOM05D004542 ORTHO05D005380 6.2e-09 64.7 106 43.4
MCO02G272 Micromonas commoda HOM05D004542 ORTHO05D005380 2.4e-08 62.8 65 50.8
vmacro01351 Vaccinium macrocarpon HOM05D004542 ORTHO05D005380 9.0e-08 60.8 88 44.3
unitig_8.g3954 Utricularia gibba HOM05D006796 ORTHO05D008615 4.9e-06 55.1 37 67.6
CBR_g39054 Chara braunii HOM05D004542 ORTHO05D005380 8.4e-06 54.3 53 45.3


User provided reference genes

Program Settings