Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR622G0157 Trochodendron aralioides HOM05D004927 ORTHO05D005798 3.9e-69 265.0 169 100.0
Nn3g16487 Nelumbo nucifera HOM05D004927 ORTHO05D005798 1.4e-45 186.8 177 69.5
GSVIVG01008533001 Vitis vinifera HOM05D004927 ORTHO05D005798 3.7e-43 178.7 164 62.2
Actinidia25582 Actinidia chinensis HOM05D004927 ORTHO05D005798 1.6e-41 173.3 164 59.8
Dinv11165 Davidia involucrata HOM05D004927 ORTHO05D005798 1.6e-41 173.3 162 60.5
Dinv23136 Davidia involucrata HOM05D004927 ORTHO05D005798 4.5e-41 171.8 162 61.1
MBI07_g34620_MAGBIO Magnolia biondii HOM05D004927 ORTHO05D005798 1.7e-40 169.9 152 61.8
Actinidia33102 Actinidia chinensis HOM05D004927 ORTHO05D005798 1.9e-39 166.4 164 58.5
CSS0046411 Camellia sinensis var. sinensis HOM05D004927 ORTHO05D005798 2.1e-38 162.9 155 58.7
Actinidia08867 Actinidia chinensis HOM05D004927 ORTHO05D005798 1.0e-37 160.6 163 57.7
Prupe.5G152100 Prunus persica HOM05D004927 ORTHO05D005798 3.4e-36 155.6 155 56.8
vmacro19200 Vaccinium macrocarpon HOM05D004927 ORTHO05D005798 4.4e-36 155.2 144 59.7
AT5G63460 Arabidopsis thaliana HOM05D004927 ORTHO05D005798 1.3e-35 153.7 155 55.5
AL8G40520 Arabidopsis lyrata HOM05D004927 ORTHO05D005798 2.8e-35 152.5 155 56.1
TWI23G0043 Tripterygium wilfordii HOM05D004927 ORTHO05D005798 4.9e-35 151.8 155 56.8
MSTRG.4598 Avicennia marina HOM05D004927 ORTHO05D005798 6.3e-35 151.4 175 53.7
CANSAT80G0771 Cannabis sativa HOM05D004927 ORTHO05D005798 8.3e-35 151.0 147 57.1
Aa31LG1G18580 Aethionema arabicum HOM05D004927 ORTHO05D005798 1.1e-34 150.6 157 58.0
CiPaw.12G042500 Carya illinoinensis HOM05D004927 ORTHO05D005798 1.4e-34 150.2 155 57.4
Sp2g26540 Schrenkiella parvula HOM05D004927 ORTHO05D005798 1.4e-34 150.2 155 56.1
Carub.0008s2416 Capsella rubella HOM05D004927 ORTHO05D005798 1.8e-34 149.8 148 56.8
Thhalv10005047m.g Eutrema salsugineum HOM05D004927 ORTHO05D005798 1.8e-34 149.8 155 55.5
Glyma.05G047500 Glycine max HOM05D004927 ORTHO05D005798 1.8e-34 149.8 155 56.8
THA.LOC104798947 Tarenaya hassleriana HOM05D004927 ORTHO05D005798 1.8e-34 149.8 155 55.5
MD06G1142800 Malus domestica HOM05D004927 ORTHO05D005798 5.4e-34 148.3 155 54.2
Potri.015G094600 Populus trichocarpa HOM05D004927 ORTHO05D005798 5.4e-34 148.3 160 55.0
Ciclev10022591m.g Citrus clementina HOM05D004927 ORTHO05D005798 1.2e-33 147.1 154 55.8
CARHR277310 Cardamine hirsuta HOM05D004927 ORTHO05D005798 1.6e-33 146.7 155 54.2
MD14G1158000 Malus domestica HOM05D004927 ORTHO05D005798 1.6e-33 146.7 155 54.8
CiPaw.11G008400 Carya illinoinensis HOM05D004927 ORTHO05D005798 2.0e-33 146.4 168 53.0
CDE02G1054 Ceratophyllum demersum HOM05D004927 ORTHO05D005798 2.0e-33 146.4 146 55.5
Cc04_g10030 Coffea canephora HOM05D004927 ORTHO05D005798 2.0e-33 146.4 150 56.0
Duzib068G0304 Durio zibethinus HOM05D004927 ORTHO05D005798 2.0e-33 146.4 162 54.3
PSO063G5502 Papaver somniferum HOM05D004927 ORTHO05D005798 2.0e-33 146.4 160 54.4
THA.LOC104818187 Tarenaya hassleriana HOM05D004927 ORTHO05D005798 3.5e-33 145.6 155 55.5
Oeu056013.1 Olea europaea HOM05D004927 ORTHO05D005798 4.5e-33 145.2 166 54.8
Potri.012G096900 Populus trichocarpa HOM05D004927 ORTHO05D005798 7.8e-33 144.4 159 56.0
Solyc03g111270.2 Solanum lycopersicum HOM05D004927 ORTHO05D005798 1.3e-32 143.7 157 50.3
Sopen03g030400 Solanum pennellii HOM05D004927 ORTHO05D005798 1.3e-32 143.7 157 50.3
SGA_v2.0_scaffold215G42324 Striga asiatica HOM05D004927 ORTHO05D005798 1.3e-32 143.7 143 56.6
BcaC04g23330 Brassica carinata HOM05D004927 ORTHO05D005798 1.7e-32 143.3 160 52.5
Gohir.D11G039650 Gossypium hirsutum HOM05D004927 ORTHO05D005798 2.3e-32 142.9 173 51.4
Thecc.03G128000 Theobroma cacao HOM05D004927 ORTHO05D005798 2.3e-32 142.9 173 52.6
Manes.06G118800 Manihot esculenta HOM05D004927 ORTHO05D005798 5.0e-32 141.7 149 58.4
PSO017G7268 Papaver somniferum HOM05D004927 ORTHO05D005798 5.0e-32 141.7 168 57.7
MSTRG.11279 Avicennia marina HOM05D004927 ORTHO05D005798 6.6e-32 141.4 156 52.6
PSO478G0696 Papaver somniferum HOM05D004927 ORTHO05D005798 1.1e-31 140.6 168 57.1
HPP92_001413 Vanilla planifolia HOM05D004927 ORTHO05D005798 1.5e-31 140.2 158 51.3
Duzib205G1407 Durio zibethinus HOM05D004927 ORTHO05D005798 1.9e-31 139.8 155 55.5
PGR083G0131 Punica granatum HOM05D004927 ORTHO05D005798 1.9e-31 139.8 163 49.7
Manes.14G051700 Manihot esculenta HOM05D004927 ORTHO05D005798 2.5e-31 139.4 155 52.9
unitig_61.g26197 Utricularia gibba HOM05D004927 ORTHO05D005798 2.5e-31 139.4 173 49.7
Nitab4.5_0003005g0020 Nicotiana tabacum HOM05D004927 ORTHO05D005798 3.3e-31 139.0 159 51.6
TWI39G0602 Tripterygium wilfordii HOM05D004927 ORTHO05D005798 3.3e-31 139.0 155 52.9
Aqoxy3G01521 Aquilegia oxysepala HOM05D004927 ORTHO05D005798 5.6e-31 138.3 165 50.3
Glyma.17G129300 Glycine max HOM05D004927 ORTHO05D005798 5.6e-31 138.3 147 55.8
Rhsim08G0189300 Rhododendron simsii HOM05D004927 ORTHO05D005798 5.6e-31 138.3 167 50.9
Gohir.A11G036100 Gossypium hirsutum HOM05D004927 ORTHO05D005798 7.3e-31 137.9 173 51.4
Phvul.003G210400 Phaseolus vulgaris HOM05D004927 ORTHO05D005798 9.5e-31 137.5 155 52.9
Gorai.007G042600 Gossypium raimondii HOM05D004927 ORTHO05D005798 2.8e-30 136.0 177 49.7
Atru.chr9.1061 Acer truncatum HOM05D004927 ORTHO05D005798 4.7e-30 135.2 161 52.8
BcaB04g19918 Brassica carinata HOM05D004927 ORTHO05D005798 2.3e-29 132.9 147 52.4
Lj4g0014142 Lotus japonicus HOM05D004927 ORTHO05D005798 2.3e-29 132.9 147 53.1
PSO782G2667 Papaver somniferum HOM05D004927 ORTHO05D005798 4.0e-29 132.1 152 52.0
A09p08260 Brassica napus HOM05D004927 ORTHO05D005798 8.9e-29 131.0 152 50.7
Migut.D01264 Erythranthe guttata HOM05D004927 ORTHO05D005798 1.5e-28 130.2 153 52.9
Lsat_1_v5_gn_1_29040 Lactuca sativa HOM05D004927 ORTHO05D005798 2.6e-28 129.4 165 47.9
C09p09350 Brassica napus HOM05D000789 ORTHO05D005798 4.4e-28 128.6 152 50.0
BolC9t53847H Brassica oleracea HOM05D000789 ORTHO05D005798 4.4e-28 128.6 152 50.0
Sabra12G0070900 Salix brachista HOM05D004927 ORTHO05D005798 4.4e-28 128.6 159 50.9
Lalb_Chr13g0297281 Lupinus albus HOM05D004927 ORTHO05D005798 5.8e-28 128.3 148 51.4
Sc04g0000700 Simmondsia chinensis HOM05D004927 ORTHO05D005798 5.8e-28 128.3 144 51.4
Lalb_Chr12g0202181 Lupinus albus HOM05D004927 ORTHO05D005798 2.9e-27 125.9 150 52.7
Oeu018539.1 Olea europaea HOM05D004927 ORTHO05D005798 3.7e-27 125.6 168 45.2
MELO3C026211.2 Cucumis melo HOM05D004927 ORTHO05D005798 4.9e-27 125.2 155 52.9
CsaV3_1G000620 Cucumis sativus L. HOM05D004927 ORTHO05D005798 6.4e-27 124.8 155 52.9
ECA247G2750 Erigeron canadensis HOM05D004927 ORTHO05D005798 1.4e-26 123.6 153 47.1
SGA_v2.0_scaffold161G37795 Striga asiatica HOM05D004927 ORTHO05D005798 1.9e-26 123.2 194 43.3
Medtr4g103580 Medicago truncatula HOM05D004927 ORTHO05D005798 3.2e-26 122.5 155 47.1
RcHm_v2.0_Chr7g0190331 Rosa chinensis HOM05D004927 ORTHO05D005798 5.4e-26 121.7 160 51.2
TPR.G19215 Trifolium pratense HOM05D004927 ORTHO05D005798 5.4e-26 121.7 154 44.8
DCAR_026226 Daucus carota HOM05D004927 ORTHO05D005798 9.2e-26 120.9 148 49.3
AagrBONN_evm.TU.Sc2ySwM_344.432 Anthoceros agrestis HOM05D004927 ORTHO05D005798 1.2e-25 120.6 145 44.8
FvH4_5g08180 Fragaria vesca HOM05D004927 ORTHO05D005798 1.2e-25 120.6 156 50.6
BraA09t36477Z Brassica rapa HOM05D004927 ORTHO05D005798 1.6e-25 120.2 165 46.1
HanXRQChr09g0273101 Helianthus annuus HOM05D004927 ORTHO05D005798 1.6e-25 120.2 150 48.7
Dinv04882 Davidia involucrata HOM05D004927 ORTHO05D005798 2.0e-25 119.8 130 55.4
Sed0011812 Sechium edule HOM05D004927 ORTHO05D005798 2.0e-25 119.8 157 49.0
CDE05G1557 Ceratophyllum demersum HOM05D004927 ORTHO05D005798 4.6e-25 118.6 69 82.6
HanXRQChr07g0193231 Helianthus annuus HOM05D004927 ORTHO05D005798 6.0e-25 118.2 170 45.9
Psat0s2546g0040 Pisum sativum HOM05D004927 ORTHO05D005798 6.0e-25 118.2 158 46.2
Sabra15G0116000 Salix brachista HOM05D004927 ORTHO05D005798 1.7e-24 116.7 175 45.1
VMungo1215G0874 Vigna mungo HOM05D004927 ORTHO05D005798 1.7e-24 116.7 139 51.1
Gorai.004G275800 Gossypium raimondii HOM05D004927 ORTHO05D005798 2.3e-24 116.3 161 60.9
Gorai.006G271700 Gossypium raimondii HOM05D004927 ORTHO05D005798 2.3e-24 116.3 151 53.0
Haze_07225 Corylus avellana HOM05D004927 ORTHO05D005798 3.0e-24 115.9 87 70.1
SalBow1G5982 Salvia bowleyana HOM05D004927 ORTHO05D005798 3.0e-24 115.9 140 47.9
ATR0561G036 Amborella trichopoda HOM05D004927 ORTHO05D005798 6.6e-24 114.8 69 79.7
Os11g0483600 Oryza sativa ssp. japonica HOM05D004927 ORTHO05D005798 6.6e-24 114.8 163 44.2
Zm00001eb169640 Zea mays HOM05D004927 ORTHO05D005798 3.3e-23 112.5 158 44.3
arahy.Tifrunner.gnm1.ann1.9DG48R Arachis hypogaea HOM05D004927 ORTHO05D005798 4.3e-23 112.1 137 49.6
arahy.Tifrunner.gnm1.ann1.PKYK26 Arachis hypogaea HOM05D004927 ORTHO05D005798 4.3e-23 112.1 137 49.6
FAN04G0012 Fragaria x ananassa HOM05D004927 ORTHO05D005798 1.2e-22 110.5 148 50.7
SalBow1G7483 Salvia bowleyana HOM05D004927 ORTHO05D005798 1.6e-22 110.2 68 79.4
Lsat_1_v5_gn_4_80380 Lactuca sativa HOM05D004927 ORTHO05D005798 2.8e-22 109.4 145 45.5
FAN13G0393 Fragaria x ananassa HOM05D004927 ORTHO05D005798 3.6e-22 109.0 148 50.0
FAN18G3853 Fragaria x ananassa HOM05D004927 ORTHO05D005798 4.7e-22 108.6 148 49.3
FAN08G3438 Fragaria x ananassa HOM05D004927 ORTHO05D005798 1.1e-21 107.5 148 49.3
Nitab4.5_0016919g0010 Nicotiana tabacum HOM05D004927 ORTHO05D005798 1.1e-21 107.5 84 66.7
Pp3c8_10310 Physcomitrium patens HOM05D004927 ORTHO05D005798 4.0e-21 105.5 153 47.7
EL10As4g23391 Beta vulgaris HOM05D004927 ORTHO05D005798 5.2e-21 105.1 134 47.0
Gohir.A09G247250 Gossypium hirsutum HOM05D004927 ORTHO05D005798 9.8e-20 100.9 145 46.9
QL10p003733 Quercus lobata HOM05D004927 ORTHO05D005798 9.8e-20 100.9 126 49.2
HPP92_001420 Vanilla planifolia HOM05D004927 ORTHO05D005798 1.7e-19 100.1 70 68.6
Os12g0442900 Oryza sativa ssp. japonica HOM05D004927 ORTHO05D005798 6.4e-19 98.2 151 41.7
BolC2t12346H Brassica oleracea HOM05D001512 ORTHO05D001574 1.1e-18 97.4 117 59.8
CBR_g36334 Chara braunii HOM05D004927 ORTHO05D005798 2.4e-18 96.3 169 42.0
C02p62750 Brassica napus HOM05D001512 ORTHO05D001574 5.4e-18 95.1 117 59.0
ClCG06G017840 Citrullus lanatus HOM05D004927 ORTHO05D005798 5.4e-18 95.1 75 69.3
vmacro16676 Vaccinium macrocarpon HOM05D004927 ORTHO05D005798 5.4e-18 95.1 113 51.3
Migut.I00501 Erythranthe guttata HOM05D004927 ORTHO05D005798 7.0e-18 94.7 69 65.2
Gohir.D08G258600 Gossypium hirsutum HOM05D004927 ORTHO05D005798 9.2e-18 94.4 145 54.5
CBR_g27958 Chara braunii HOM05D004927 ORTHO05D005798 2.1e-17 93.2 161 39.8
Mapoly0121s0035 Marchantia polymorpha HOM05D004927 ORTHO05D005798 3.5e-17 92.4 69 63.8
SMO334G0034 Selaginella moellendorffii HOM05D004927 ORTHO05D005798 1.3e-16 90.5 160 50.0
BcaC03g18207 Brassica carinata HOM05D004927 ORTHO05D005798 6.6e-16 88.2 149 49.7
PGSC0003DMG400015243 Solanum tuberosum HOM05D004927 ORTHO05D005798 8.6e-16 87.8 160 39.4
Gohir.A09G246700 Gossypium hirsutum HOM05D004927 ORTHO05D005798 2.5e-15 86.3 71 62.0
Lj9A478G96 Lonicera japonica HOM05D004927 ORTHO05D005798 5.2e-13 78.6 149 38.9
Oeu037712.1 Olea europaea HOM05D004927 ORTHO05D005798 2.9e-11 72.8 43 79.1
CAN.G352.25 Capsicum annuum HOM05D004927 ORTHO05D005798 6.4e-11 71.6 45 68.9
Eucgr.B00112 Eucalyptus grandis HOM05D004927 ORTHO05D005798 8.3e-11 71.2 117 41.9
BraA02t09201Z Brassica rapa HOM05D004927 ORTHO05D005798 4.6e-09 65.5 99 49.5
Gohir.D09G248000 Gossypium hirsutum HOM05D004927 ORTHO05D005798 1.0e-08 64.3 58 55.2
Gohir.D01G081600 Gossypium hirsutum HOM05D004927 ORTHO05D005798 1.3e-08 63.9 65 55.4
Gohir.D07G062100 Gossypium hirsutum HOM05D004927 ORTHO05D005798 1.3e-08 63.9 65 55.4
Gorai.007G057300 Gossypium raimondii HOM05D004927 ORTHO05D005798 1.3e-08 63.9 65 55.4
COL.COLO4_28098 Corchorus olitorius HOM05D004927 ORTHO05D005798 3.0e-08 62.8 62 64.5
SEGI_27141 Sequoiadendron giganteum HOM05D004927 ORTHO05D005798 3.9e-08 62.4 44 61.4
Gohir.D09G247201 Gossypium hirsutum HOM05D004927 ORTHO05D005798 3.3e-07 59.3 42 73.8
SEGI_01314 Sequoiadendron giganteum HOM05D004927 ORTHO05D005798 3.3e-07 59.3 42 71.4
Gohir.D11G291800 Gossypium hirsutum HOM05D004927 ORTHO05D005798 7.3e-07 58.2 43 65.1
AUR62029623 Chenopodium quinoa HOM05D004927 ORTHO05D005798 1.2e-06 57.4 39 69.2
PSO017G4858 Papaver somniferum HOM05D000007 ORTHO05D000017 1.6e-06 57.0 54 57.4
PSO478G4824 Papaver somniferum HOM05D000007 ORTHO05D000017 4.7e-06 55.5 54 55.6
PRCOL_00006426 Prasinoderma coloniale HOM05D004927 ORTHO05D005798 4.7e-06 55.5 62 46.8
Lsat_1_v5_gn_5_95420 Lactuca sativa HOM05D004927 ORTHO05D005798 8.1e-06 54.7 44 63.6


User provided reference genes

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