Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR622G0082 Trochodendron aralioides HOM05D001420 ORTHO05D009292 5.3e-96 354.4 182 100.0
MBI11_g44423_MAGBIO Magnolia biondii HOM05D001420 ORTHO05D002488 2.7e-79 298.9 176 86.9
Nn3g16459 Nelumbo nucifera HOM05D001420 ORTHO05D009292 2.7e-76 288.9 179 82.1
Aqoxy3G01555 Aquilegia oxysepala HOM05D001420 ORTHO05D009292 8.0e-76 287.3 171 86.0
GSVIVG01033089001 Vitis vinifera HOM05D001420 ORTHO05D009292 1.7e-73 279.6 170 81.8
PSO478G4377 Papaver somniferum HOM05D001420 ORTHO05D009292 3.7e-73 278.5 169 81.1
Haze_14879 Corylus avellana HOM05D001420 ORTHO05D009292 2.7e-71 272.3 177 77.4
Potri.001G329600 Populus trichocarpa HOM05D001420 ORTHO05D009292 4.5e-71 271.6 175 80.0
Dinv25658 Davidia involucrata HOM05D001420 ORTHO05D002488 7.7e-71 270.8 172 80.2
vmacro18348 Vaccinium macrocarpon HOM05D001420 ORTHO05D009292 6.5e-70 267.7 170 78.8
PSO017G5378 Papaver somniferum HOM05D001420 ORTHO05D009292 2.5e-69 265.8 174 77.0
CSS0004965 Camellia sinensis var. sinensis HOM05D001420 ORTHO05D009292 5.5e-69 264.6 172 78.5
Hma1.2p1_1278F.1_g272270 Hydrangea macrophylla HOM05D001420 ORTHO05D009292 5.5e-69 264.6 172 77.3
MD09G1010400 Malus domestica HOM05D001420 ORTHO05D009292 9.4e-69 263.8 166 79.5
QL02p071311 Quercus lobata HOM05D001420 ORTHO05D009292 1.2e-68 263.5 175 76.6
Prupe.3G306700 Prunus persica HOM05D001420 ORTHO05D009292 1.6e-68 263.1 169 79.9
Lj1g0001542 Lotus japonicus HOM05D001420 ORTHO05D009292 2.7e-68 262.3 172 77.3
PGR142G3591 Punica granatum HOM05D001420 ORTHO05D009292 2.7e-68 262.3 172 76.7
Actinidia04437 Actinidia chinensis HOM05D001420 ORTHO05D009292 6.1e-68 261.2 171 78.4
AUR62017830 Chenopodium quinoa HOM05D001420 ORTHO05D009292 3.0e-67 258.8 169 76.9
Thecc.04G036700 Theobroma cacao HOM05D001420 ORTHO05D009292 3.0e-67 258.8 175 75.4
CSS0009369 Camellia sinensis var. sinensis HOM05D001420 ORTHO05D009292 5.2e-67 258.1 186 73.1
Duzib147G1300 Durio zibethinus HOM05D001420 ORTHO05D009292 6.8e-67 257.7 175 74.3
Cpa.g.sc171.11 Carica papaya HOM05D001420 ORTHO05D009292 8.8e-67 257.3 173 74.6
Cc07_g00860 Coffea canephora HOM05D001420 ORTHO05D009292 1.2e-66 256.9 166 75.9
Nitab4.5_0005161g0070 Nicotiana tabacum HOM05D001420 ORTHO05D009292 1.5e-66 256.5 169 75.1
Manes.15G161200 Manihot esculenta HOM05D001420 ORTHO05D009292 5.7e-66 254.6 179 76.5
Migut.F00060 Erythranthe guttata HOM05D001420 ORTHO05D009292 7.5e-66 254.2 170 72.4
Rhsim08G0042700 Rhododendron simsii HOM05D001420 ORTHO05D009292 9.8e-66 253.8 176 75.0
HPP92_009721 Vanilla planifolia HOM05D001420 ORTHO05D009292 9.8e-66 253.8 177 75.7
AUR62003518 Chenopodium quinoa HOM05D001420 ORTHO05D009292 2.2e-65 252.7 169 75.1
Glyma.19G091500 Glycine max HOM05D001420 ORTHO05D009292 3.7e-65 251.9 170 75.3
RcHm_v2.0_Chr2g0175601 Rosa chinensis HOM05D001420 ORTHO05D009292 3.7e-65 251.9 169 76.3
Oeu035224.1 Olea europaea HOM05D001420 ORTHO05D009292 4.9e-65 251.5 172 76.2
THA.LOC104825624 Tarenaya hassleriana HOM05D001420 ORTHO05D009292 8.3e-65 250.8 170 74.1
FvH4_6g53561 Fragaria vesca HOM05D001420 ORTHO05D009292 1.8e-64 249.6 169 74.6
Sc15g0002740 Simmondsia chinensis HOM05D001420 ORTHO05D009292 3.1e-64 248.8 169 74.0
Gohir.A09G036000 Gossypium hirsutum HOM05D001420 ORTHO05D009292 4.1e-64 248.4 175 71.4
TPR.G38286 Trifolium pratense HOM05D001420 ORTHO05D009292 5.4e-64 248.1 172 70.3
MBI11_g05328_MAGBIO Magnolia biondii HOM05D001420 ORTHO05D002488 7.0e-64 247.7 141 89.4
Medtr7g029105 Medicago truncatula HOM05D001420 ORTHO05D009292 9.2e-64 247.3 172 72.7
Nitab4.5_0000559g0390 Nicotiana tabacum HOM05D001420 ORTHO05D009292 9.2e-64 247.3 176 71.0
FAN14G1551 Fragaria x ananassa HOM05D001420 ORTHO05D000136 1.2e-63 246.9 167 74.9
SGA_v2.0_scaffold44G16915 Striga asiatica HOM05D001420 ORTHO05D009292 1.2e-63 246.9 170 71.8
Eucgr.I01645 Eucalyptus grandis HOM05D001420 ORTHO05D009292 2.7e-63 245.7 169 74.6
FAN09G1657 Fragaria x ananassa HOM05D001420 ORTHO05D009292 3.5e-63 245.4 169 72.8
Lalb_Chr22g0360361 Lupinus albus HOM05D001420 ORTHO05D009292 5.9e-63 244.6 173 71.7
ATR0561G272 Amborella trichopoda HOM05D001420 ORTHO05D009292 7.7e-63 244.2 169 74.6
MSTRG.3074 Avicennia marina HOM05D001420 ORTHO05D009292 2.3e-62 242.7 172 71.5
Gorai.006G042300 Gossypium raimondii HOM05D001420 ORTHO05D009292 2.3e-62 242.7 175 70.3
Glyma.16G056200 Glycine max HOM05D001420 ORTHO05D009292 3.8e-62 241.9 173 70.5
TWI60G0015 Tripterygium wilfordii HOM05D001420 ORTHO05D009292 6.6e-62 241.1 170 72.4
Psat3g174720 Pisum sativum HOM05D001420 ORTHO05D002488 1.1e-61 240.4 169 71.0
arahy.Tifrunner.gnm1.ann1.WDB61R Arachis hypogaea HOM05D001420 ORTHO05D009292 2.5e-61 239.2 173 69.9
CANSAT64G1297 Cannabis sativa HOM05D001420 ORTHO05D009292 2.5e-61 239.2 166 74.1
FAN05G4256 Fragaria x ananassa HOM05D001420 ORTHO05D009292 5.6e-61 238.0 181 68.0
ClCG05G013550 Citrullus lanatus HOM05D001420 ORTHO05D009292 7.3e-61 237.7 179 71.5
VMungo1383G3091 Vigna mungo HOM05D001420 ORTHO05D009292 4.7e-60 235.0 169 70.4
CDE05G2056 Ceratophyllum demersum HOM05D001420 ORTHO05D009292 6.1e-60 234.6 167 70.7
Cfa007225 Carpinus fangiana HOM05D001420 ORTHO05D009292 3.0e-59 232.3 146 79.5
CsaV3_3G026980 Cucumis sativus L. HOM05D001420 ORTHO05D009292 4.0e-59 231.9 167 73.1
Haze_14955 Corylus avellana HOM05D001420 ORTHO05D009292 6.8e-59 231.1 146 79.5
Atru.chr6.2574 Acer truncatum HOM05D001420 ORTHO05D009292 1.2e-58 230.3 149 79.2
AL5G16160 Arabidopsis lyrata HOM05D001420 ORTHO05D009292 2.0e-58 229.6 170 67.1
BcaB04g19424 Brassica carinata HOM05D001420 ORTHO05D009292 7.5e-58 227.6 170 66.5
BcaC04g23914 Brassica carinata HOM05D001420 ORTHO05D009292 9.8e-58 227.3 170 66.5
Thhalv10004992m.g Eutrema salsugineum HOM05D001420 ORTHO05D009292 9.8e-58 227.3 170 66.5
Sed0020252 Sechium edule HOM05D001420 ORTHO05D009292 9.8e-58 227.3 177 65.5
PGSC0003DMG400022915 Solanum tuberosum HOM05D001420 ORTHO05D009292 9.8e-58 227.3 166 65.7
AT3G27050 Arabidopsis thaliana HOM05D001420 ORTHO05D009292 6.4e-57 224.6 170 66.5
A09p03260 Brassica napus HOM05D001420 ORTHO05D009292 6.4e-57 224.6 171 66.7
BraA09t35964Z Brassica rapa HOM05D001420 ORTHO05D009292 6.4e-57 224.6 171 66.7
Lsat_1_v5_gn_0_26060 Lactuca sativa HOM05D001420 ORTHO05D009292 1.1e-56 223.8 167 68.9
Sp2g16180 Schrenkiella parvula HOM05D001420 ORTHO05D009292 1.8e-56 223.0 170 65.9
C09p03460 Brassica napus HOM05D001420 ORTHO05D009292 2.4e-56 222.6 171 66.1
BolC9t53267H Brassica oleracea HOM05D001420 ORTHO05D009292 2.4e-56 222.6 171 66.1
Carub.0005s0529 Capsella rubella HOM05D001420 ORTHO05D009292 7.0e-56 221.1 170 64.7
unitig_60.g25408 Utricularia gibba HOM05D001420 ORTHO05D009292 7.0e-56 221.1 171 66.1
Sabra16G0211000 Salix brachista HOM05D001420 ORTHO05D009292 9.2e-56 220.7 251 54.6
CARHR148270 Cardamine hirsuta HOM05D001420 ORTHO05D009292 1.2e-55 220.3 170 65.9
Os11g0488600 Oryza sativa ssp. japonica HOM05D001420 ORTHO05D009292 1.2e-55 220.3 188 61.7
HanXRQChr17g0550091 Helianthus annuus HOM05D001420 ORTHO05D009292 2.7e-55 219.2 165 69.7
Aa31LG2G5540 Aethionema arabicum HOM05D001420 ORTHO05D009292 2.3e-54 216.1 170 64.7
SalBow4G1795 Salvia bowleyana HOM05D001420 ORTHO05D009292 3.0e-54 215.7 172 64.0
ECA246G1005 Erigeron canadensis HOM05D001420 ORTHO05D002488 3.9e-54 215.3 166 65.1
SEGI_21368 Sequoiadendron giganteum HOM05D001420 ORTHO05D009292 1.6e-52 209.9 170 60.0
Dinv33335 Davidia involucrata HOM05D001420 ORTHO05D009292 4.0e-51 205.3 120 83.3
Zm00001eb112760 Zea mays HOM05D001420 ORTHO05D009292 6.8e-51 204.5 195 56.9
Gohir.D09G037000 Gossypium hirsutum HOM05D001420 ORTHO05D009292 8.9e-51 204.1 144 72.2
SalBow4G0299 Salvia bowleyana HOM05D001420 ORTHO05D009292 2.2e-49 199.5 203 54.2
MELO3C014890.2 Cucumis melo HOM05D001420 ORTHO05D009292 1.9e-48 196.4 146 72.6
Phvul.001G093200 Phaseolus vulgaris HOM05D001420 ORTHO05D009292 5.4e-48 194.9 170 59.4
Peaxi162Scf00700g00030 Petunia axillaris HOM05D001420 ORTHO05D009292 9.2e-48 194.1 132 71.2
Ciclev10017089m.g Citrus clementina HOM05D001420 ORTHO05D009292 2.3e-46 189.5 132 72.0
RcHm_v2.0_Chr2g0175681 Rosa chinensis HOM05D001420 ORTHO05D009292 2.1e-44 183.0 134 70.1
AagrBONN_evm.TU.Sc2ySwM_228.3079 Anthoceros agrestis HOM05D001420 ORTHO05D009292 6.2e-44 181.4 178 51.7
Pp3c14_4200 Physcomitrium patens HOM05D001420 ORTHO05D009292 2.6e-42 176.0 172 51.7
Pp3c1_27230 Physcomitrium patens HOM05D001420 ORTHO05D009292 2.6e-42 176.0 169 53.8
Ah.03g147520 Amaranthus hybridus HOM05D001420 ORTHO05D009292 3.2e-40 169.1 139 66.2
Lj7C610G7 Lonicera japonica HOM05D001420 ORTHO05D009292 4.1e-40 168.7 112 75.0
MD16G1254400 Malus domestica HOM05D001420 ORTHO05D009292 1.7e-38 163.3 115 71.3
SMO119G0238 Selaginella moellendorffii HOM05D001420 ORTHO05D009292 2.8e-36 156.0 139 58.3
CDE05G0537 Ceratophyllum demersum HOM05D001420 ORTHO05D009292 3.2e-32 142.5 116 62.9
CBR_g762 Chara braunii HOM05D001420 ORTHO05D009292 7.8e-31 137.9 160 43.8
CiPaw.03G055800 Carya illinoinensis HOM05D001420 ORTHO05D002488 1.9e-21 106.7 68 79.4
DCAR_021795 Daucus carota HOM05D001420 ORTHO05D009292 1.1e-19 100.9 81 63.0
Hund12739 Selenicereus undatus HOM05D001420 ORTHO05D009292 3.3e-13 79.3 54 75.9
FAN02G0503 Fragaria x ananassa HOM05D001420 ORTHO05D009292 5.6e-13 78.6 62 66.1
Cre01.g049050 Chlamydomonas reinhardtii HOM05D001420 ORTHO05D009292 6.2e-12 75.1 147 29.3
Nitab4.5_0000525g0030 Nicotiana tabacum HOM05D001420 ORTHO05D009292 9.0e-11 71.2 39 82.1
Actinidia30872 Actinidia chinensis HOM05D005765 ORTHO05D002313 1.2e-07 60.8 95 43.2
DCAR_021794 Daucus carota HOM05D001420 ORTHO05D009292 3.9e-06 55.8 38 73.7


User provided reference genes

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