Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR622G0071 Trochodendron aralioides HOM05D005624 ORTHO05D006896 1.9e-118 429.1 208 100.0
CiPaw.05G096300 Carya illinoinensis HOM05D005624 ORTHO05D006896 1.5e-99 366.3 208 86.5
Actinidia33983 Actinidia chinensis HOM05D005624 ORTHO05D006896 5.9e-99 364.4 208 85.1
Prupe.1G209600 Prunus persica HOM05D005624 ORTHO05D006896 5.0e-98 361.3 205 85.4
PSO478G3843 Papaver somniferum HOM05D005624 ORTHO05D006896 1.1e-97 360.1 210 83.3
PSO017G6046 Papaver somniferum HOM05D005624 ORTHO05D006896 4.7e-96 354.8 210 82.4
MD13G1135700 Malus domestica HOM05D005624 ORTHO05D006896 6.1e-96 354.4 204 83.3
CANSAT25G1757 Cannabis sativa HOM05D005624 ORTHO05D006896 7.9e-96 354.0 209 81.3
QL03p047013 Quercus lobata HOM05D005624 ORTHO05D006896 1.4e-95 353.2 207 82.6
Cfa020947 Carpinus fangiana HOM05D005624 ORTHO05D006896 2.3e-95 352.4 208 82.2
Haze_19383 Corylus avellana HOM05D005624 ORTHO05D006896 2.3e-95 352.4 208 82.2
Aqoxy3G01649 Aquilegia oxysepala HOM05D005624 ORTHO05D006896 3.0e-95 352.1 208 82.2
MSTRG.8074 Avicennia marina HOM05D005624 ORTHO05D006896 3.9e-95 351.7 210 81.9
Oeu032685.1 Olea europaea HOM05D005624 ORTHO05D006896 1.1e-94 350.1 208 81.2
ClCG10G013180 Citrullus lanatus HOM05D005624 ORTHO05D006896 2.0e-94 349.4 208 81.2
MD16G1131300 Malus domestica HOM05D005624 ORTHO05D006896 2.0e-94 349.4 205 82.9
PGR119G0553 Punica granatum HOM05D005624 ORTHO05D006896 2.6e-94 349.0 208 80.8
Rhsim12G0090500 Rhododendron simsii HOM05D005624 ORTHO05D006896 2.6e-94 349.0 208 81.2
GSVIVG01001144001 Vitis vinifera HOM05D005624 ORTHO05D006896 2.6e-94 349.0 208 82.2
Atru.chr12.1491 Acer truncatum HOM05D005624 ORTHO05D006896 9.7e-94 347.1 208 81.7
CSS0016097 Camellia sinensis var. sinensis HOM05D005624 ORTHO05D006896 9.7e-94 347.1 208 80.8
COL.COLO4_32213 Corchorus olitorius HOM05D005624 ORTHO05D006896 1.3e-93 346.7 208 81.2
Migut.L00899 Erythranthe guttata HOM05D005624 ORTHO05D006896 1.7e-93 346.3 201 82.1
Manes.08G097600 Manihot esculenta HOM05D005624 ORTHO05D006896 1.7e-93 346.3 208 79.3
Cc11_g14800 Coffea canephora HOM05D005624 ORTHO05D006896 6.3e-93 344.4 208 78.8
CsaV3_3G043430 Cucumis sativus L. HOM05D005624 ORTHO05D006896 6.3e-93 344.4 208 80.8
Eucgr.J01702 Eucalyptus grandis HOM05D005624 ORTHO05D006896 1.4e-92 343.2 208 79.3
Hma1.2p1_0562F.1_g179050 Hydrangea macrophylla HOM05D005624 ORTHO05D006896 1.4e-92 343.2 206 79.6
Peaxi162Scf00334g00119 Petunia axillaris HOM05D005624 ORTHO05D006896 3.1e-92 342.0 208 80.8
SalBow2G1530 Salvia bowleyana HOM05D005624 ORTHO05D006896 7.0e-92 340.9 208 79.3
ATR0582G264 Amborella trichopoda HOM05D005624 ORTHO05D006896 1.2e-91 340.1 209 79.4
Glyma.08G266400 Glycine max HOM05D005624 ORTHO05D006896 1.2e-91 340.1 203 79.8
VMungo0251G1277 Vigna mungo HOM05D005624 ORTHO05D006896 1.5e-91 339.7 203 81.8
Duzib128G1380 Durio zibethinus HOM05D005624 ORTHO05D006896 2.0e-91 339.3 208 78.8
Gohir.D08G238100 Gossypium hirsutum HOM05D005624 ORTHO05D006896 2.6e-91 339.0 208 78.8
Lj3A918T40 Lonicera japonica HOM05D005624 ORTHO05D006896 2.6e-91 339.0 208 78.8
THA.LOC104811263 Tarenaya hassleriana HOM05D005624 ORTHO05D006896 2.6e-91 339.0 206 77.7
Gorai.004G253600 Gossypium raimondii HOM05D005624 ORTHO05D006896 3.4e-91 338.6 208 78.4
Sed0018373 Sechium edule HOM05D005624 ORTHO05D006896 4.5e-91 338.2 204 79.9
BcaB01g05468 Brassica carinata HOM05D005624 ORTHO05D006896 7.7e-91 337.4 204 78.9
Gohir.A08G221500 Gossypium hirsutum HOM05D005624 ORTHO05D006896 7.7e-91 337.4 204 79.4
Lj4g0021292 Lotus japonicus HOM05D005624 ORTHO05D006896 7.7e-91 337.4 203 81.3
AT5G11680 Arabidopsis thaliana HOM05D005624 ORTHO05D006896 1.3e-90 336.7 206 78.2
FvH4_4g21930 Fragaria vesca HOM05D005624 ORTHO05D006896 1.7e-90 336.3 203 79.8
Sp6g31930 Schrenkiella parvula HOM05D005624 ORTHO05D006896 1.7e-90 336.3 206 77.2
AL6G22400 Arabidopsis lyrata HOM05D005624 ORTHO05D006896 2.2e-90 335.9 206 77.7
RcHm_v2.0_Chr4g0428141 Rosa chinensis HOM05D005624 ORTHO05D006896 2.2e-90 335.9 205 79.5
DCAR_028131 Daucus carota HOM05D005624 ORTHO05D006896 2.9e-90 335.5 206 77.7
BraA03t09846Z Brassica rapa HOM05D005624 ORTHO05D006896 3.8e-90 335.1 205 78.0
CARHR201540 Cardamine hirsuta HOM05D005624 ORTHO05D006896 5.0e-90 334.7 205 77.6
Ciclev10005917m.g Citrus clementina HOM05D005624 ORTHO05D006896 5.0e-90 334.7 206 77.7
Sed0005404 Sechium edule HOM05D005624 ORTHO05D006896 5.0e-90 334.7 208 78.4
Aa31LG3G15530 Aethionema arabicum HOM05D000602 ORTHO05D001147 8.5e-90 334.0 208 76.9
C03p05810 Brassica napus HOM05D000602 ORTHO05D006896 8.5e-90 334.0 200 79.0
BolC3t13101H Brassica oleracea HOM05D005624 ORTHO05D006896 8.5e-90 334.0 200 79.0
Phvul.003G274200 Phaseolus vulgaris HOM05D005624 ORTHO05D006896 1.1e-89 333.6 203 79.3
Thecc.05G235200 Theobroma cacao HOM05D005624 ORTHO05D006896 1.1e-89 333.6 208 77.4
TWI75G1298 Tripterygium wilfordii HOM05D005624 ORTHO05D006896 1.1e-89 333.6 210 78.1
CiPaw.06G112400 Carya illinoinensis HOM05D005624 ORTHO05D006896 2.5e-89 332.4 220 76.8
CAN.G39.18 Capsicum annuum HOM05D005624 ORTHO05D006896 7.2e-89 330.9 200 80.0
Glyma.16G101200 Glycine max HOM05D005624 ORTHO05D006896 7.2e-89 330.9 203 77.8
BcaC03g13386 Brassica carinata HOM05D005624 ORTHO05D006896 9.4e-89 330.5 206 76.2
Thhalv10014678m.g Eutrema salsugineum HOM05D005624 ORTHO05D006896 1.2e-88 330.1 208 76.0
FAN17G0486 Fragaria x ananassa HOM05D005624 ORTHO05D006896 1.2e-88 330.1 203 78.3
Medtr8g070860 Medicago truncatula HOM05D005624 ORTHO05D006896 2.1e-88 329.3 203 78.8
BolC2t06481H Brassica oleracea HOM05D005624 ORTHO05D006896 2.7e-88 328.9 205 76.1
Sopen02g002020 Solanum pennellii HOM05D005624 ORTHO05D006896 2.7e-88 328.9 200 80.0
Ah.03g134040 Amaranthus hybridus HOM05D005624 ORTHO05D006896 3.6e-88 328.6 201 80.1
TPR.G6115 Trifolium pratense HOM05D005624 ORTHO05D006896 3.6e-88 328.6 206 78.2
Lsat_1_v5_gn_1_78160 Lactuca sativa HOM05D005624 ORTHO05D006896 4.7e-88 328.2 201 79.6
PGSC0003DMG400029983 Solanum tuberosum HOM05D005624 ORTHO05D006896 6.1e-88 327.8 200 79.5
unitig_22.g6367 Utricularia gibba HOM05D005624 ORTHO05D006896 6.1e-88 327.8 204 77.0
Carub.0006s1018 Capsella rubella HOM05D005624 ORTHO05D006896 8.0e-88 327.4 206 76.2
HPP92_013550 Vanilla planifolia HOM05D005624 ORTHO05D006896 1.0e-87 327.0 206 77.7
ECA236G4393 Erigeron canadensis HOM05D000127 ORTHO05D000243 1.4e-87 326.6 195 80.5
Psat4g111480 Pisum sativum HOM05D005624 ORTHO05D006896 1.8e-87 326.2 203 76.4
Sc17g0003450 Simmondsia chinensis HOM05D005624 ORTHO05D006896 1.8e-87 326.2 209 79.9
Zm00001eb318180 Zea mays HOM05D005624 ORTHO05D006896 1.8e-87 326.2 204 76.0
Hund05398 Selenicereus undatus HOM05D005624 ORTHO05D006896 6.7e-87 324.3 204 77.5
Zm00001eb102600 Zea mays HOM05D005624 ORTHO05D006896 6.7e-87 324.3 204 75.5
TWI18G0768 Tripterygium wilfordii HOM05D005624 ORTHO05D006896 1.5e-86 323.2 210 74.8
AUR62008562 Chenopodium quinoa HOM05D005624 ORTHO05D006896 2.0e-86 322.8 201 78.1
Sabra01G0051200 Salix brachista HOM05D005624 ORTHO05D006896 2.0e-86 322.8 208 76.4
Solyc02g005603.1 Solanum lycopersicum HOM05D005624 ORTHO05D006896 2.0e-86 322.8 200 79.0
AUR62033199 Chenopodium quinoa HOM05D005624 ORTHO05D006896 4.4e-86 321.6 201 77.6
Nitab4.5_0001089g0030 Nicotiana tabacum HOM05D005624 ORTHO05D006896 7.4e-86 320.9 203 77.3
Nitab4.5_0011777g0020 Nicotiana tabacum HOM05D005624 ORTHO05D006896 1.3e-85 320.1 203 76.8
HanXRQChr10g0312121 Helianthus annuus HOM05D005624 ORTHO05D006896 1.7e-85 319.7 206 78.2
Potri.003G158200 Populus trichocarpa HOM05D005624 ORTHO05D006896 3.7e-85 318.5 210 75.2
arahy.Tifrunner.gnm1.ann1.CA7SJ1 Arachis hypogaea HOM05D005624 ORTHO05D006896 5.3e-84 314.7 204 75.0
arahy.Tifrunner.gnm1.ann1.YB0CZG Arachis hypogaea HOM05D005624 ORTHO05D006896 5.3e-84 314.7 204 75.0
EL10Ac7g17520 Beta vulgaris HOM05D005624 ORTHO05D006896 9.1e-84 313.9 201 76.6
Potri.001G072600 Populus trichocarpa HOM05D005624 ORTHO05D006896 9.1e-84 313.9 208 74.5
Peaxi162Scf00681g00118 Petunia axillaris HOM05D005624 ORTHO05D006896 2.0e-83 312.8 203 75.4
unitig_8.g3112 Utricularia gibba HOM05D005624 ORTHO05D006896 1.3e-82 310.1 230 67.4
Sopen04g004320 Solanum pennellii HOM05D005624 ORTHO05D006896 2.5e-81 305.8 203 73.4
PGSC0003DMG402032565 Solanum tuberosum HOM05D005624 ORTHO05D006896 3.2e-81 305.4 203 73.4
Solyc04g009190.3 Solanum lycopersicum HOM05D005624 ORTHO05D006896 4.7e-80 301.6 203 72.4
A03p05080 Brassica napus HOM05D000602 ORTHO05D006896 3.7e-77 292.0 183 76.0
MELO3C026760.2 Cucumis melo HOM05D005624 ORTHO05D006896 8.2e-77 290.8 174 80.5
Duzib177G0503 Durio zibethinus HOM05D005624 ORTHO05D006896 8.5e-74 280.8 206 69.4
Lsat_1_v5_gn_5_173840 Lactuca sativa HOM05D005624 ORTHO05D006896 2.1e-72 276.2 201 69.2
Peaxi162Scf00021g02113 Petunia axillaris HOM05D005624 ORTHO05D006896 3.6e-72 275.4 205 65.4
vmacro16032 Vaccinium macrocarpon HOM05D005624 ORTHO05D006896 6.8e-71 271.2 166 80.1
Zm00001eb071390 Zea mays HOM05D005624 ORTHO05D006896 2.6e-70 269.2 165 77.6
HanXRQChr01g0012261 Helianthus annuus HOM05D005624 ORTHO05D006896 9.8e-70 267.3 200 66.0
Nitab4.5_0000069g0230 Nicotiana tabacum HOM05D005624 ORTHO05D006896 7.7e-67 257.7 208 64.4
Nitab4.5_0004301g0080 Nicotiana tabacum HOM05D005624 ORTHO05D006896 1.0e-66 257.3 208 64.4
SMO164G0111 Selaginella moellendorffii HOM05D005624 ORTHO05D006896 2.9e-66 255.8 208 57.2
MBI07_g41258_MAGBIO Magnolia biondii HOM05D005624 ORTHO05D006896 5.5e-65 251.5 134 90.3
Dinv02966 Davidia involucrata HOM05D005624 ORTHO05D006896 3.6e-64 248.8 153 80.4
MBI11_g04265_MAGBIO Magnolia biondii HOM05D005624 ORTHO05D006896 2.3e-63 246.1 162 72.2
Pp3c7_9270 Physcomitrium patens HOM05D005624 ORTHO05D006896 7.5e-62 241.1 200 58.0
Mapoly0097s0090 Marchantia polymorpha HOM05D005624 ORTHO05D006896 9.2e-60 234.2 205 56.1
AagrBONN_evm.TU.Sc2ySwM_117.3158 Anthoceros agrestis HOM05D005624 ORTHO05D006896 3.5e-59 232.3 205 55.6
Solyc01g008220.3 Solanum lycopersicum HOM05D005624 ORTHO05D006896 1.2e-56 223.8 198 59.6
CAN.G619.7 Capsicum annuum HOM05D005624 ORTHO05D006896 2.0e-54 216.5 148 73.0
Lalb_Chr05g0228971 Lupinus albus HOM05D005624 ORTHO05D006896 7.8e-51 204.5 124 75.8
Zm00001eb036000 Zea mays HOM05D005624 ORTHO05D006896 9.5e-49 197.6 119 76.5
Zm00001eb052330 Zea mays HOM05D005624 ORTHO05D006896 9.5e-49 197.6 119 75.6
Gorai.013G198700 Gossypium raimondii HOM05D005624 ORTHO05D006896 2.3e-47 193.0 148 68.9
Gohir.A13G159151 Gossypium hirsutum HOM05D005624 ORTHO05D006896 8.9e-47 191.0 148 68.2
PGSC0003DMG400016363 Solanum tuberosum HOM05D005624 ORTHO05D006896 2.4e-44 183.0 171 59.6
Migut.L00595 Erythranthe guttata HOM05D005624 ORTHO05D006896 2.7e-43 179.5 97 83.5
CBR_g24147 Chara braunii HOM05D005624 ORTHO05D006896 8.3e-37 157.9 160 50.6
C02p05330 Brassica napus HOM05D005624 ORTHO05D006896 2.8e-32 142.9 99 71.7
Cre03.g189100 Chlamydomonas reinhardtii HOM05D005624 ORTHO05D006896 1.7e-29 133.7 206 38.8
CAN.G282.51 Capsicum annuum HOM05D005624 ORTHO05D006896 1.4e-28 130.6 207 42.5
Cc10_g16310 Coffea canephora HOM05D005624 ORTHO05D006896 2.1e-24 116.7 75 73.3
Cc08_g00010 Coffea canephora HOM05D005624 ORTHO05D006896 3.1e-23 112.8 75 69.3
CSS0031660 Camellia sinensis var. sinensis HOM05D005624 ORTHO05D006896 4.0e-23 112.5 103 58.3
SEGI_14660 Sequoiadendron giganteum HOM05D005624 ORTHO05D006896 1.3e-21 107.5 60 78.3
Cc06_g22650 Coffea canephora HOM05D005624 ORTHO05D006896 7.1e-20 101.7 75 66.7
Dinv02968 Davidia involucrata HOM05D005624 ORTHO05D006896 2.9e-13 79.7 37 94.6
Lalb_Chr05g0228961 Lupinus albus HOM05D005624 ORTHO05D006896 5.1e-10 68.9 37 86.5
SEGI_32969 Sequoiadendron giganteum HOM05D005624 ORTHO05D006896 2.1e-08 63.5 40 80.0
Lsat_1_v5_gn_4_78441 Lactuca sativa HOM05D005624 ORTHO05D006896 4.8e-08 62.4 41 68.3
Os09g0512900 Oryza sativa ssp. japonica HOM05D005624 ORTHO05D006896 1.1e-07 61.2 36 77.8
Cc10_g16300 Coffea canephora HOM05D005624 ORTHO05D006896 5.8e-06 55.5 38 63.2


User provided reference genes

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