Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR622G0010 Trochodendron aralioides HOM05D004185 ORTHO05D005294 3.1e-179 631.7 322 100.0
TAR374G1058 Trochodendron aralioides HOM05D004185 ORTHO05D005294 7.6e-122 441.0 352 68.5
QL08p064476 Quercus lobata HOM05D004185 ORTHO05D005294 5.5e-112 408.3 321 68.8
Atru.chr3.2840 Acer truncatum HOM05D004185 ORTHO05D005294 1.4e-110 403.7 317 68.8
GSVIVG01032967001 Vitis vinifera HOM05D004185 ORTHO05D005294 3.0e-110 402.5 323 69.0
Manes.11G075000 Manihot esculenta HOM05D004185 ORTHO05D005294 1.3e-108 397.1 322 66.5
Prupe.6G095300 Prunus persica HOM05D004185 ORTHO05D005294 3.4e-106 389.0 323 65.0
MBI07_g13955_MAGBIO Magnolia biondii HOM05D004185 ORTHO05D005294 1.0e-105 387.5 267 75.7
Haze_14968 Corylus avellana HOM05D004185 ORTHO05D005294 1.2e-103 380.6 311 65.6
RcHm_v2.0_Chr7g0223141 Rosa chinensis HOM05D004185 ORTHO05D005294 1.2e-103 380.6 323 63.8
arahy.Tifrunner.gnm1.ann1.DC6XCB Arachis hypogaea HOM05D004185 ORTHO05D005294 4.7e-103 378.6 230 81.7
arahy.Tifrunner.gnm1.ann1.J4TN1Z Arachis hypogaea HOM05D004185 ORTHO05D005294 4.7e-103 378.6 230 81.7
Cfa007152 Carpinus fangiana HOM05D004185 ORTHO05D005294 6.1e-103 378.3 322 64.0
Actinidia37713 Actinidia chinensis HOM05D004185 ORTHO05D005294 1.4e-102 377.1 277 69.7
CANSAT80G1231 Cannabis sativa HOM05D004185 ORTHO05D005294 1.4e-102 377.1 240 79.2
Psat3g092000 Pisum sativum HOM05D004185 ORTHO05D005294 1.4e-102 377.1 230 80.4
FAN14G0322 Fragaria x ananassa HOM05D004185 ORTHO05D005294 1.8e-102 376.7 323 63.8
Sabra16G0256800 Salix brachista HOM05D004185 ORTHO05D005294 2.3e-102 376.3 318 61.9
TPR.G26467 Trifolium pratense HOM05D004185 ORTHO05D005294 3.9e-102 375.6 230 80.0
PSO478G4545 Papaver somniferum HOM05D004185 ORTHO05D005294 5.1e-102 375.2 251 75.3
Nn1g02944 Nelumbo nucifera HOM05D004185 ORTHO05D005294 6.7e-102 374.8 233 79.8
PSO017G0731 Papaver somniferum HOM05D004185 ORTHO05D005294 1.5e-101 373.6 228 81.1
HanXRQChr03g0070171 Helianthus annuus HOM05D004185 ORTHO05D005294 2.0e-101 373.2 319 61.4
Potri.001G391400 Populus trichocarpa HOM05D004185 ORTHO05D005294 2.0e-101 373.2 318 62.3
Rhsim01G0198500 Rhododendron simsii HOM05D004185 ORTHO05D005294 2.0e-101 373.2 261 73.6
CiPaw.07G054200 Carya illinoinensis HOM05D004185 ORTHO05D005294 3.3e-101 372.5 322 63.7
FAN16G0073 Fragaria x ananassa HOM05D004185 ORTHO05D005294 3.3e-101 372.5 323 62.8
Atru.chr11.1029 Acer truncatum HOM05D004185 ORTHO05D005294 5.7e-101 371.7 294 68.0
Actinidia19546 Actinidia chinensis HOM05D004185 ORTHO05D005294 5.7e-101 371.7 228 78.5
Ciclev10005565m.g Citrus clementina HOM05D004185 ORTHO05D005294 5.7e-101 371.7 322 66.5
Medtr7g084480 Medicago truncatula HOM05D004185 ORTHO05D005294 5.7e-101 371.7 228 81.1
Lj2g0021694 Lotus japonicus HOM05D004185 ORTHO05D005294 7.4e-101 371.3 240 76.7
vmacro18393 Vaccinium macrocarpon HOM05D004185 ORTHO05D005294 7.4e-101 371.3 252 75.0
Lj1A1083G27 Lonicera japonica HOM05D004185 ORTHO05D005294 9.7e-101 370.9 317 62.5
Lj1g0009190 Lotus japonicus HOM05D004185 ORTHO05D005294 9.7e-101 370.9 230 79.1
Sc07g0003880 Simmondsia chinensis HOM05D004185 ORTHO05D005294 9.7e-101 370.9 292 66.4
Ca_08226_v3 Cicer arietinum L. HOM05D004185 ORTHO05D005294 1.3e-100 370.5 228 79.4
Duzib084G1135 Durio zibethinus HOM05D004185 ORTHO05D005294 1.7e-100 370.2 317 63.7
Hma1.2p1_0565F.1_g179520 Hydrangea macrophylla HOM05D004185 ORTHO05D005294 2.8e-100 369.4 278 69.1
HanXRQChr05g0146191 Helianthus annuus HOM05D004185 ORTHO05D005294 4.8e-100 368.6 319 60.2
Rhsim08G0038300 Rhododendron simsii HOM05D004185 ORTHO05D005294 4.8e-100 368.6 311 64.6
FAN21G3167 Fragaria x ananassa HOM05D004185 ORTHO05D005294 1.4e-99 367.1 323 61.3
MD11G1131000 Malus domestica HOM05D004185 ORTHO05D005294 1.8e-99 366.7 231 77.5
Eucgr.F01985 Eucalyptus grandis HOM05D004185 ORTHO05D005294 3.1e-99 365.9 228 79.8
TWI63G0858 Tripterygium wilfordii HOM05D004185 ORTHO05D005294 4.1e-99 365.5 325 61.8
Thecc.04G049500 Theobroma cacao HOM05D004185 ORTHO05D005294 5.3e-99 365.2 317 62.5
Glyma.16G046900 Glycine max HOM05D004185 ORTHO05D005294 7.0e-99 364.8 258 73.3
FvH4_3g33130 Fragaria vesca HOM05D004185 ORTHO05D005294 9.1e-99 364.4 323 61.3
PGR142G0491 Punica granatum HOM05D004185 ORTHO05D005294 9.1e-99 364.4 316 63.3
Cpa.g.sc139.45 Carica papaya HOM05D004185 ORTHO05D005294 1.2e-98 364.0 228 79.8
FAN05G5133 Fragaria x ananassa HOM05D004185 ORTHO05D005294 1.6e-98 363.6 323 62.5
Aqoxy6G01376 Aquilegia oxysepala HOM05D004185 ORTHO05D005294 2.0e-98 363.2 234 76.9
CAN.G767.4 Capsicum annuum HOM05D004185 ORTHO05D005294 2.6e-98 362.8 230 77.8
Solyc10g005930.2 Solanum lycopersicum HOM05D004185 ORTHO05D005294 2.6e-98 362.8 230 77.8
Sopen10g001890 Solanum pennellii HOM05D004185 ORTHO05D005294 2.6e-98 362.8 230 77.8
VMungo0464G1671 Vigna mungo HOM05D004185 ORTHO05D005294 3.5e-98 362.5 230 79.1
Lalb_Chr02g0153581 Lupinus albus HOM05D004185 ORTHO05D005294 4.5e-98 362.1 230 78.7
MD03G1104500 Malus domestica HOM05D004185 ORTHO05D005294 1.3e-97 360.5 230 77.0
Gohir.A09G051200 Gossypium hirsutum HOM05D004185 ORTHO05D005294 1.7e-97 360.1 319 61.4
EL10Ac5g11038 Beta vulgaris HOM05D004185 ORTHO05D005294 2.2e-97 359.8 233 78.1
PGSC0003DMG402004569 Solanum tuberosum HOM05D004185 ORTHO05D005294 2.2e-97 359.8 230 77.4
AUR62021660 Chenopodium quinoa HOM05D004185 ORTHO05D005294 2.9e-97 359.4 257 70.8
Lsat_1_v5_gn_9_110520 Lactuca sativa HOM05D004185 ORTHO05D005294 3.8e-97 359.0 319 60.2
AUR62008433 Chenopodium quinoa HOM05D004185 ORTHO05D005294 6.5e-97 358.2 257 70.8
Gohir.D01G158300 Gossypium hirsutum HOM05D004185 ORTHO05D005294 1.9e-96 356.7 319 60.5
Oeu023432.1 Olea europaea HOM05D004185 ORTHO05D005294 1.9e-96 356.7 228 78.1
Gorai.002G196300 Gossypium raimondii HOM05D004185 ORTHO05D005294 5.5e-96 355.1 319 60.5
COL.COLO4_05853 Corchorus olitorius HOM05D004546 ORTHO05D005294 7.2e-96 354.8 230 76.5
ECA232G0163 Erigeron canadensis HOM05D004185 ORTHO05D005294 9.4e-96 354.4 319 58.3
THA.LOC104812726 Tarenaya hassleriana HOM05D004185 ORTHO05D005294 6.7e-94 348.2 228 74.1
DCAR_009570 Daucus carota HOM05D004185 ORTHO05D005294 8.8e-94 347.8 315 62.5
SEGI_19426 Sequoiadendron giganteum HOM05D004185 ORTHO05D005294 2.0e-93 346.7 230 73.5
Aa31LG2G14180 Aethionema arabicum HOM05D004185 ORTHO05D005294 5.7e-93 345.1 228 73.7
ATR0602G180 Amborella trichopoda HOM05D004185 ORTHO05D005294 7.5e-93 344.7 265 66.8
MSTRG.11461 Avicennia marina HOM05D004185 ORTHO05D005294 9.7e-93 344.4 224 76.8
A09p34390 Brassica napus HOM05D004185 ORTHO05D005294 9.7e-93 344.4 228 73.2
BraA09t38984Z Brassica rapa HOM05D004185 ORTHO05D005294 9.7e-93 344.4 228 73.2
CARHR031200 Cardamine hirsuta HOM05D004185 ORTHO05D005294 1.3e-92 344.0 228 74.1
AL1G45960 Arabidopsis lyrata HOM05D004185 ORTHO05D005294 1.7e-92 343.6 228 74.1
Sp1g27580 Schrenkiella parvula HOM05D004185 ORTHO05D005294 1.7e-92 343.6 229 73.4
AT1G31860 Arabidopsis thaliana HOM05D004185 ORTHO05D005294 2.8e-92 342.8 228 73.7
Thhalv10008417m.g Eutrema salsugineum HOM05D004185 ORTHO05D005294 3.7e-92 342.4 228 73.2
SGA_v2.0_scaffold114G31833 Striga asiatica HOM05D004185 ORTHO05D005294 4.8e-92 342.0 272 67.6
BcaB03g13785 Brassica carinata HOM05D004185 ORTHO05D005294 8.2e-92 341.3 229 72.5
BcaB07g32843 Brassica carinata HOM05D004185 ORTHO05D005294 1.1e-91 340.9 230 72.6
BcaC05g27950 Brassica carinata HOM05D004185 ORTHO05D005294 1.4e-91 340.5 229 72.5
C05p39540 Brassica napus HOM05D004185 ORTHO05D005294 1.4e-91 340.5 229 72.5
BolC5t32695H Brassica oleracea HOM05D004185 ORTHO05D005294 1.4e-91 340.5 229 72.5
Migut.D01934 Erythranthe guttata HOM05D004185 ORTHO05D005294 1.4e-91 340.5 228 74.6
SalBow2G1694 Salvia bowleyana HOM05D004185 ORTHO05D005294 1.4e-91 340.5 233 72.1
Peaxi162Scf00060g00441 Petunia axillaris HOM05D004185 ORTHO05D005294 1.8e-91 340.1 212 78.8
BraA05t21430Z Brassica rapa HOM05D004185 ORTHO05D005294 4.1e-91 339.0 233 71.7
A05p25460 Brassica napus HOM05D004185 ORTHO05D005294 5.3e-91 338.6 233 71.2
Zm00001eb332710 Zea mays HOM05D004185 ORTHO05D005294 2.7e-90 336.3 229 73.8
Os01g0276500 Oryza sativa ssp. japonica HOM05D004185 ORTHO05D005294 3.8e-89 332.4 229 72.1
CDE09G0075 Ceratophyllum demersum HOM05D004185 ORTHO05D005294 1.5e-88 330.5 230 70.4
Nitab4.5_0002655g0020 Nicotiana tabacum HOM05D004185 ORTHO05D005294 1.9e-88 330.1 283 61.8
FAN25G2535 Fragaria x ananassa HOM05D004185 ORTHO05D005294 2.5e-88 329.7 323 56.7
BcaC05g27215 Brassica carinata HOM05D004185 ORTHO05D005294 4.2e-88 328.9 233 70.4
BolC5t31845H Brassica oleracea HOM05D004185 ORTHO05D005294 4.2e-88 328.9 233 70.4
unitig_0.g1440 Utricularia gibba HOM05D004185 ORTHO05D005294 4.2e-88 328.9 231 73.2
Nitab4.5_0000426g0080 Nicotiana tabacum HOM05D004185 ORTHO05D005294 5.5e-88 328.6 297 60.3
CsaV3_5G025000 Cucumis sativus L. HOM05D004185 ORTHO05D005294 2.7e-87 326.2 236 69.5
MELO3C005094.2 Cucumis melo HOM05D004185 ORTHO05D005294 4.0e-86 322.4 236 69.1
Gorai.006G057300 Gossypium raimondii HOM05D004185 ORTHO05D005294 4.0e-86 322.4 319 57.4
ClCG01G007890 Citrullus lanatus HOM05D004185 ORTHO05D005294 3.4e-85 319.3 233 68.2
Hund11935 Selenicereus undatus HOM05D004185 ORTHO05D005294 7.5e-85 318.2 204 77.0
RcHm_v2.0_Chr5g0060441 Rosa chinensis HOM05D004185 ORTHO05D005294 2.4e-83 313.2 204 75.5
Mapoly0010s0125 Marchantia polymorpha HOM05D004185 ORTHO05D005294 7.0e-83 311.6 229 67.7
SHI18823 Sapria himalayana HOM05D004185 ORTHO05D005294 9.1e-83 311.2 240 66.2
arahy.Tifrunner.gnm1.ann1.75SEPN Arachis hypogaea HOM05D004185 ORTHO05D005294 5.9e-82 308.5 230 69.6
Phvul.001G082700 Phaseolus vulgaris HOM05D004185 ORTHO05D005294 2.2e-81 306.6 201 77.1
SMO119G0194 Selaginella moellendorffii HOM05D004185 ORTHO05D005294 2.2e-81 306.6 229 66.4
CDE02G0170 Ceratophyllum demersum HOM05D004185 ORTHO05D005294 6.5e-81 305.1 212 69.8
Sed0024479 Sechium edule HOM05D004185 ORTHO05D005294 1.1e-80 304.3 199 74.9
CSS0049496 Camellia sinensis var. sinensis HOM05D004185 ORTHO05D005294 4.2e-80 302.4 191 78.0
AagrBONN_evm.TU.Sc2ySwM_228.4587 Anthoceros agrestis HOM05D004185 ORTHO05D005294 1.6e-79 300.4 316 54.4
Haze_15442 Corylus avellana HOM05D004185 ORTHO05D005294 6.1e-79 298.5 232 68.1
Carub.0001s3019 Capsella rubella HOM05D004185 ORTHO05D005294 1.2e-77 294.3 199 72.9
Cc02_g08450 Coffea canephora HOM05D004185 ORTHO05D005294 1.5e-77 293.9 201 74.6
MD03G1104300 Malus domestica HOM05D004185 ORTHO05D005294 3.7e-76 289.3 233 67.0
Pp3c19_11880 Physcomitrium patens HOM05D004185 ORTHO05D005294 1.8e-75 287.0 228 63.2
Gohir.D09G052300 Gossypium hirsutum HOM05D004185 ORTHO05D005294 1.2e-74 284.3 201 71.6
CBR_g41148 Chara braunii HOM05D004185 ORTHO05D005294 1.1e-72 277.7 238 60.5
FAN02G1839 Fragaria x ananassa HOM05D004185 ORTHO05D005294 1.9e-72 276.9 268 58.6
MBI07_g07565_MAGBIO Magnolia biondii HOM05D004185 ORTHO05D005294 1.9e-72 276.9 166 82.5
HPP92_023021 Vanilla planifolia HOM05D004185 ORTHO05D005294 7.3e-72 275.0 200 69.0
FvH4_6g09080 Fragaria vesca HOM05D004185 ORTHO05D005294 1.6e-71 273.9 255 59.2
CBR_g45683 Chara braunii HOM05D004185 ORTHO05D005294 8.9e-70 268.1 245 57.1
MCO14G189 Micromonas commoda HOM05D004185 ORTHO05D005294 2.9e-68 263.1 239 59.0
CSS0023313 Camellia sinensis var. sinensis HOM05D004185 ORTHO05D005294 3.9e-65 252.7 185 71.4
C05p31190 Brassica napus HOM05D004185 ORTHO05D005294 7.3e-64 248.4 228 56.6
CSS0015772 Camellia sinensis var. sinensis HOM05D004185 ORTHO05D005294 2.8e-63 246.5 137 85.4
PRCOL_00000818 Prasinoderma coloniale HOM05D004185 ORTHO05D005294 4.7e-63 245.7 227 55.9
Cre13.g576650 Chlamydomonas reinhardtii HOM05D004185 ORTHO05D005294 9.8e-61 238.0 238 52.1
QL02p069093 Quercus lobata HOM05D004185 ORTHO05D005294 3.1e-54 216.5 150 71.3
Gorai.008G088200 Gossypium raimondii HOM05D004185 ORTHO05D005294 6.8e-54 215.3 319 42.3
Nn7g37500 Nelumbo nucifera HOM05D004185 ORTHO05D005294 9.8e-53 211.5 114 86.0
Dinv33271 Davidia involucrata HOM05D004185 ORTHO05D005294 4.1e-51 206.1 256 48.8
Cc00_g25400 Coffea canephora HOM05D004185 ORTHO05D005294 5.6e-48 195.7 146 68.5
Gorai.007G236100 Gossypium raimondii HOM05D004185 ORTHO05D005294 4.9e-44 182.6 147 64.6
Gohir.D11G219700 Gossypium hirsutum HOM05D004185 ORTHO05D005294 3.5e-42 176.4 147 63.3
Gohir.1Z049452 Gossypium hirsutum HOM05D004185 ORTHO05D005294 2.4e-38 163.7 133 64.7
vmacro12996 Vaccinium macrocarpon HOM05D004185 ORTHO05D005294 2.6e-37 160.2 158 57.6
Gohir.1Z049352 Gossypium hirsutum HOM05D004185 ORTHO05D005294 6.0e-34 149.1 171 50.9
Gohir.D12G080201 Gossypium hirsutum HOM05D004185 ORTHO05D005294 6.0e-34 149.1 171 50.9
Prupe.6G096900 Prunus persica HOM05D004185 ORTHO05D005294 6.0e-34 149.1 125 60.8
CDE01G0632 Ceratophyllum demersum HOM05D004185 ORTHO05D005294 9.6e-32 141.7 118 63.6
Gohir.D11G259201 Gossypium hirsutum HOM05D002015 ORTHO05D016007 8.4e-28 128.6 75 82.7
MD03G1104400 Malus domestica HOM05D004185 ORTHO05D005294 8.4e-28 128.6 157 47.8
Gorai.002G177700 Gossypium raimondii HOM05D002015 ORTHO05D016007 1.9e-27 127.5 75 82.7
Gohir.D02G127900 Gossypium hirsutum HOM05D002015 ORTHO05D016007 2.4e-27 127.1 83 74.7
Gohir.D01G143966 Gossypium hirsutum HOM05D002015 ORTHO05D016007 3.2e-27 126.7 75 81.3
Gohir.D04G064100 Gossypium hirsutum HOM05D002015 ORTHO05D016007 2.1e-26 124.0 75 78.7
Nn7g37501 Nelumbo nucifera HOM05D004185 ORTHO05D005294 2.1e-23 114.0 75 78.7
Ca_29370_v3 Cicer arietinum L. HOM05D004185 ORTHO05D005294 9.0e-22 108.6 193 36.3
QL02p069129 Quercus lobata HOM05D004185 ORTHO05D005294 2.2e-20 104.0 68 77.9
arahy.Tifrunner.gnm1.ann1.R9VNWC Arachis hypogaea HOM05D004185 ORTHO05D085194 1.2e-18 98.2 90 56.7
QL02p068903 Quercus lobata HOM05D004185 ORTHO05D005294 2.3e-17 94.0 65 78.5
QL02p069147 Quercus lobata HOM05D004185 ORTHO05D005294 3.0e-17 93.6 70 70.0
SMO179G0001 Selaginella moellendorffii HOM05D004185 ORTHO05D005294 1.9e-16 90.9 64 71.9
Glyma.11G241900 Glycine max HOM05D004185 ORTHO05D005294 4.5e-13 79.7 64 67.2
Gorai.005G143700 Gossypium raimondii HOM05D004185 ORTHO05D016007 6.5e-12 75.9 44 81.8
QL02p069014 Quercus lobata HOM05D004185 ORTHO05D005294 6.5e-12 75.9 46 84.8
Gohir.D13G151200 Gossypium hirsutum HOM05D004185 ORTHO05D016007 9.3e-11 72.0 44 75.0
DCAR_020016 Daucus carota HOM05D004185 ORTHO05D005294 2.1e-10 70.9 62 59.7
SMO119G0521 Selaginella moellendorffii HOM05D004185 ORTHO05D005294 3.5e-10 70.1 64 57.8
RcHm_v2.0_Chr5g0060451 Rosa chinensis HOM05D004185 ORTHO05D005294 2.1e-07 60.8 115 39.1
Cfa023091 Carpinus fangiana HOM05D004109 ORTHO05D005867 4.8e-07 59.7 191 27.7
A09p34420 Brassica napus HOM05D004185 ORTHO05D040565 1.1e-06 58.5 38 65.8
BraA09t38986Z Brassica rapa HOM05D004185 ORTHO05D040565 1.1e-06 58.5 38 65.8


User provided reference genes

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