Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR573G0004 Trochodendron aralioides HOM05D002401 ORTHO05D010686 1.8e-102 375.9 193 100.0
TAR628G0023 Trochodendron aralioides HOM05D002401 ORTHO05D006143 1.0e-36 157.5 97 83.5
TAR362G0006 Trochodendron aralioides HOM05D001716 ORTHO05D004234 2.0e-21 106.7 68 77.9
TAR629G0042 Trochodendron aralioides HOM05D002401 ORTHO05D006143 2.3e-20 103.2 68 76.5
TAR628G1629 Trochodendron aralioides HOM05D002401 ORTHO05D006143 1.1e-19 100.9 68 76.5
TAR376G0282 Trochodendron aralioides HOM05D002401 ORTHO05D006143 2.0e-16 90.1 59 76.3
GSVIVG01011051001 Vitis vinifera HOM05D002401 ORTHO05D006143 8.6e-12 74.7 59 62.7
Nn7g38029 Nelumbo nucifera HOM05D002401 ORTHO05D006143 1.2e-10 70.9 68 58.8
TAR636G2535 Trochodendron aralioides HOM05D002401 ORTHO05D006143 8.1e-10 68.2 36 91.7
Sopen04g033330 Solanum pennellii HOM05D002401 ORTHO05D006143 1.1e-09 67.8 59 61.0
QL04p005174 Quercus lobata HOM05D002401 ORTHO05D006143 1.8e-09 67.0 59 59.3
PGSC0003DMG400016886 Solanum tuberosum HOM05D002401 ORTHO05D006143 3.1e-09 66.2 59 59.3
Aqoxy6G00960 Aquilegia oxysepala HOM05D002401 ORTHO05D006143 5.2e-09 65.5 68 54.4
CiPaw.06G110100 Carya illinoinensis HOM05D002401 ORTHO05D006143 6.8e-09 65.1 59 59.3
Cc07_g16250 Coffea canephora HOM05D002401 ORTHO05D006143 8.9e-09 64.7 68 52.9
Solyc04g079750.4 Solanum lycopersicum HOM05D002401 ORTHO05D006143 8.9e-09 64.7 59 59.3
Lj1A1064T34 Lonicera japonica HOM05D002401 ORTHO05D006143 1.5e-08 63.9 68 52.9
Eucgr.H02545 Eucalyptus grandis HOM05D002401 ORTHO05D006143 2.0e-08 63.5 68 51.5
Nitab4.5_0009288g0040 Nicotiana tabacum HOM05D002401 ORTHO05D006143 2.6e-08 63.2 59 57.6
CiPaw.16G052500 Carya illinoinensis HOM05D002401 ORTHO05D006143 3.4e-08 62.8 59 59.3
MBI16_g31342_MAGBIO Magnolia biondii HOM05D002401 ORTHO05D006143 3.4e-08 62.8 68 52.9
MBI16_g45778_MAGBIO Magnolia biondii HOM05D002401 ORTHO05D006143 3.4e-08 62.8 68 52.9
CAN.G371.115 Capsicum annuum HOM05D002401 ORTHO05D006143 4.4e-08 62.4 59 55.9
GSVIVG01022768001 Vitis vinifera HOM05D002401 ORTHO05D439398 7.6e-08 61.6 54 59.3
Hma1.2p1_0260F.1_g104390 Hydrangea macrophylla HOM05D002401 ORTHO05D006143 9.9e-08 61.2 59 54.2
Lj1g0004451 Lotus japonicus HOM05D002401 ORTHO05D006143 1.7e-07 60.5 68 48.5
PSO700G0184 Papaver somniferum HOM05D002401 ORTHO05D006143 1.7e-07 60.5 60 51.7
Psat0s2724g0080 Pisum sativum HOM05D002401 ORTHO05D006143 2.9e-07 59.7 69 49.3
Cfa020647 Carpinus fangiana HOM05D002401 ORTHO05D006143 4.9e-07 58.9 57 56.1
Haze_17608 Corylus avellana HOM05D002401 ORTHO05D006143 4.9e-07 58.9 59 57.6
Actinidia15286 Actinidia chinensis HOM05D001143 ORTHO05D001457 6.4e-07 58.5 59 52.5
COL.COLO4_26393 Corchorus olitorius HOM05D002401 ORTHO05D006143 1.1e-06 57.8 59 50.8
CSS0037792 Camellia sinensis var. sinensis HOM05D002401 ORTHO05D006143 1.4e-06 57.4 58 55.2
CSS0045600 Camellia sinensis var. sinensis HOM05D002401 ORTHO05D006143 1.4e-06 57.4 58 55.2
Dinv29831 Davidia involucrata HOM05D002401 ORTHO05D006143 1.4e-06 57.4 61 57.4
Hund09910 Selenicereus undatus HOM05D002401 ORTHO05D006143 1.4e-06 57.4 68 48.5
Nitab4.5_0000110g0070 Nicotiana tabacum HOM05D002401 ORTHO05D006143 2.4e-06 56.6 59 57.6
RcHm_v2.0_Chr5g0074221 Rosa chinensis HOM05D002401 ORTHO05D006143 2.4e-06 56.6 57 52.6
Sabra02G0103000 Salix brachista HOM05D002401 ORTHO05D006143 2.4e-06 56.6 68 50.0
PSO170G6637 Papaver somniferum HOM05D002401 ORTHO05D006143 3.2e-06 56.2 68 47.1
AUR62008526 Chenopodium quinoa HOM05D002401 ORTHO05D006143 4.1e-06 55.8 68 44.1
Ciclev10002047m.g Citrus clementina HOM05D002401 ORTHO05D006143 4.1e-06 55.8 59 50.8
TAR625G0191 Trochodendron aralioides HOM05D008572 ORTHO05D010686 4.1e-06 55.8 71 46.5
Cpa.g.sc64.28 Carica papaya HOM05D002401 ORTHO05D006143 5.4e-06 55.5 69 49.3
Peaxi162Scf00280g00077 Petunia axillaris HOM05D002401 ORTHO05D006143 5.4e-06 55.5 60 53.3
Rhsim08G0075100 Rhododendron simsii HOM05D002401 ORTHO05D006143 5.4e-06 55.5 59 54.2
RcHm_v2.0_Chr6g0294461 Rosa chinensis HOM05D002401 ORTHO05D006143 5.4e-06 55.5 57 50.9
Manes.05G166100 Manihot esculenta HOM05D002401 ORTHO05D006143 7.1e-06 55.1 68 47.1
SGA_v2.0_scaffold14G07044 Striga asiatica HOM05D002401 ORTHO05D006143 7.1e-06 55.1 59 45.8
MSTRG.24312 Avicennia marina HOM05D002401 ORTHO05D006143 9.2e-06 54.7 59 52.5
AUR62023962 Chenopodium quinoa HOM05D002401 ORTHO05D006143 9.2e-06 54.7 68 44.1
FAN24G0239 Fragaria x ananassa HOM05D002401 ORTHO05D006143 9.2e-06 54.7 57 50.9
Sc02g0006690 Simmondsia chinensis HOM05D002401 ORTHO05D006143 9.2e-06 54.7 68 45.6
TAR629G2800 Trochodendron aralioides HOM05D008572 ORTHO05D010686 9.2e-06 54.7 32 84.4
TAR636G1348 Trochodendron aralioides HOM05D000093 ORTHO05D002784 9.2e-06 54.7 32 84.4


User provided reference genes

Program Settings