Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR517G0007 Trochodendron aralioides HOM05D001827 ORTHO05D001790 2.0e-52 210.3 293 100.0
CSS0010892 Camellia sinensis var. sinensis HOM05D001827 ORTHO05D001790 6.5e-35 152.1 294 87.4
CSS0027094 Camellia sinensis var. sinensis HOM05D001827 ORTHO05D001790 6.5e-35 152.1 294 87.8
Actinidia04995 Actinidia chinensis HOM05D001827 ORTHO05D001790 1.6e-33 147.5 292 88.0
FvH4_3g42741 Fragaria vesca HOM05D001827 ORTHO05D001790 1.3e-30 137.9 292 67.1
RcHm_v2.0_Chr5g0076481 Rosa chinensis HOM05D001827 ORTHO05D001790 2.8e-30 136.7 292 60.6
Sabra16G0242100 Salix brachista HOM05D001827 ORTHO05D001790 3.7e-30 136.3 293 84.3
Lj6g0015113 Lotus japonicus HOM05D001827 ORTHO05D001790 8.2e-30 135.2 292 76.7
Cfa016913 Carpinus fangiana HOM05D001827 ORTHO05D001790 1.7e-27 127.5 292 80.8
ClCG10G004390 Citrullus lanatus HOM05D001827 ORTHO05D001790 1.7e-27 127.5 292 66.1
Oeu046939.1 Olea europaea HOM05D001827 ORTHO05D001790 8.4e-27 125.2 292 50.0
TAR629G2670 Trochodendron aralioides HOM05D001812 ORTHO05D001874 8.4e-27 125.2 86 79.1
CsaV3_3G004170 Cucumis sativus L. HOM05D001827 ORTHO05D001790 1.1e-26 124.8 292 59.9
arahy.Tifrunner.gnm1.ann1.5CFI8R Arachis hypogaea HOM05D001827 ORTHO05D001790 2.5e-26 123.6 292 49.0
MD11G1032400 Malus domestica HOM05D001827 ORTHO05D001790 2.5e-26 123.6 292 80.5
Haze_09842 Corylus avellana HOM05D001827 ORTHO05D001790 3.2e-26 123.2 292 80.1
Duzib268G1786 Durio zibethinus HOM05D001827 ORTHO05D001790 5.5e-26 122.5 283 69.6
Eucgr.F02039 Eucalyptus grandis HOM05D001827 ORTHO05D001790 7.1e-26 122.1 278 41.0
arahy.Tifrunner.gnm1.ann1.21F8WZ Arachis hypogaea HOM05D001827 ORTHO05D001790 9.3e-26 121.7 292 49.0
Thecc.07G010300 Theobroma cacao HOM05D001827 ORTHO05D001790 9.3e-26 121.7 86 70.9
COL.COLO4_09854 Corchorus olitorius HOM05D001827 ORTHO05D001790 1.6e-25 120.9 86 72.1
PGSC0003DMG400022271 Solanum tuberosum HOM05D001827 ORTHO05D001790 6.1e-25 119.0 315 53.3
AUR62017147 Chenopodium quinoa HOM05D001827 ORTHO05D001790 1.3e-24 117.9 308 67.9
GSVIVG01014707001 Vitis vinifera HOM05D001827 ORTHO05D001790 2.3e-24 117.1 86 73.3
Prupe.6G025300 Prunus persica HOM05D001827 ORTHO05D001790 3.0e-24 116.7 86 70.9
Gohir.A04G005000 Gossypium hirsutum HOM05D001827 ORTHO05D001790 3.9e-24 116.3 86 69.8
Gohir.D05G384900 Gossypium hirsutum HOM05D001827 ORTHO05D001790 3.9e-24 116.3 86 69.8
Gorai.009G451600 Gossypium raimondii HOM05D001827 ORTHO05D001790 3.9e-24 116.3 86 69.8
VMungo0540G0539 Vigna mungo HOM05D001827 ORTHO05D001790 5.1e-24 115.9 86 69.8
Rhsim06G0231100 Rhododendron simsii HOM05D001827 ORTHO05D001790 6.7e-24 115.5 278 78.4
Actinidia30387 Actinidia chinensis HOM05D001827 ORTHO05D001790 8.7e-24 115.2 86 73.3
Lalb_Chr15g0082201 Lupinus albus HOM05D001827 ORTHO05D001790 8.7e-24 115.2 86 67.4
Ciclev10007701m.g Citrus clementina HOM05D001827 ORTHO05D001790 1.1e-23 114.8 86 68.6
TWI39G0045 Tripterygium wilfordii HOM05D001827 ORTHO05D001790 1.1e-23 114.8 291 69.8
vmacro11602 Vaccinium macrocarpon HOM05D001827 ORTHO05D001790 1.1e-23 114.8 275 64.7
AUR62035660 Chenopodium quinoa HOM05D001827 ORTHO05D001790 1.5e-23 114.4 308 59.1
Duzib213G1002 Durio zibethinus HOM05D001827 ORTHO05D001790 1.5e-23 114.4 86 67.4
Glyma.18G075600 Glycine max HOM05D001827 ORTHO05D001790 1.5e-23 114.4 86 69.8
Sopen07g033890 Solanum pennellii HOM05D001827 ORTHO05D001790 1.5e-23 114.4 315 54.9
Duzib170G0264 Durio zibethinus HOM05D003625 ORTHO05D004382 1.9e-23 114.0 86 66.3
Hma1.2p1_1516F.1_g288370 Hydrangea macrophylla HOM05D001827 ORTHO05D001790 3.3e-23 113.2 292 80.8
Solyc07g065680.3 Solanum lycopersicum HOM05D001827 ORTHO05D001790 4.3e-23 112.8 315 53.7
Ah.06g180970 Amaranthus hybridus HOM05D001827 ORTHO05D001790 5.7e-23 112.5 308 50.3
CAN.G623.22 Capsicum annuum HOM05D001827 ORTHO05D001790 5.7e-23 112.5 315 53.7
CANSAT11G0161 Cannabis sativa HOM05D001827 ORTHO05D001790 7.4e-23 112.1 281 50.9
FAN11G2212 Fragaria x ananassa HOM05D001827 ORTHO05D001790 7.4e-23 112.1 275 65.1
Glyma.08G330800 Glycine max HOM05D001827 ORTHO05D001790 9.7e-23 111.7 276 79.3
MD03G1029200 Malus domestica HOM05D001827 ORTHO05D001790 9.7e-23 111.7 86 68.6
Phvul.006G058800 Phaseolus vulgaris HOM05D001827 ORTHO05D001790 9.7e-23 111.7 86 67.4
QL08p003651 Quercus lobata HOM05D001827 ORTHO05D001790 1.3e-22 111.3 92 64.1
Dinv10348 Davidia involucrata HOM05D001827 ORTHO05D001790 1.6e-22 110.9 85 72.9
Manes.15G058600 Manihot esculenta HOM05D001827 ORTHO05D001790 1.6e-22 110.9 87 71.3
Psat5g165560 Pisum sativum HOM05D001827 ORTHO05D001790 1.6e-22 110.9 90 70.0
Sc03g0011630 Simmondsia chinensis HOM05D001827 ORTHO05D001790 1.6e-22 110.9 309 43.7
arahy.Tifrunner.gnm1.ann1.UDIE03 Arachis hypogaea HOM05D001827 ORTHO05D001790 2.2e-22 110.5 85 67.1
FAN16G2144 Fragaria x ananassa HOM05D001827 ORTHO05D001790 2.8e-22 110.2 275 64.4
FAN21G2473 Fragaria x ananassa HOM05D001827 ORTHO05D001790 2.8e-22 110.2 274 62.0
Glyma.02G301400 Glycine max HOM05D001827 ORTHO05D001790 2.8e-22 110.2 292 32.9
arahy.Tifrunner.gnm1.ann1.U3UNQX Arachis hypogaea HOM05D001827 ORTHO05D001790 3.7e-22 109.8 85 67.1
CiPaw.11G205100 Carya illinoinensis HOM05D001827 ORTHO05D001790 1.1e-21 108.2 86 67.4
Manes.03G142600 Manihot esculenta HOM05D001827 ORTHO05D001790 1.4e-21 107.8 87 69.0
TAR626G1140 Trochodendron aralioides HOM05D001827 ORTHO05D001790 2.4e-21 107.1 91 70.3
FAN25G2361 Fragaria x ananassa HOM05D001827 ORTHO05D001790 3.1e-21 106.7 271 65.3
Gorai.002G101700 Gossypium raimondii HOM05D001827 ORTHO05D001790 3.1e-21 106.7 86 62.8
Lalb_Chr20g0114111 Lupinus albus HOM05D001827 ORTHO05D001790 3.1e-21 106.7 85 65.9
Peaxi162Scf00139g01120 Petunia axillaris HOM05D001827 ORTHO05D001790 3.1e-21 106.7 314 49.4
Potri.001G369200 Populus trichocarpa HOM05D001827 ORTHO05D001790 3.1e-21 106.7 87 66.7
THA.LOC104811675 Tarenaya hassleriana HOM05D001827 ORTHO05D001790 5.3e-21 105.9 284 44.7
Cc05_g15100 Coffea canephora HOM05D001827 ORTHO05D001790 9.0e-21 105.1 88 63.6
Gohir.D01G077200 Gossypium hirsutum HOM05D001827 ORTHO05D001790 9.0e-21 105.1 86 61.6
Hma1.2p1_1094F.1_g256430 Hydrangea macrophylla HOM05D001827 ORTHO05D001790 1.2e-20 104.8 84 71.4
Sed0007556 Sechium edule HOM05D001827 ORTHO05D001790 1.5e-20 104.4 309 40.5
TWI38G2079 Tripterygium wilfordii HOM05D001827 ORTHO05D001790 1.5e-20 104.4 86 61.6
Atru.chr2.3710 Acer truncatum HOM05D001827 ORTHO05D001790 2.0e-20 104.0 87 63.2
Ca_06402_v3 Cicer arietinum L. HOM05D001827 ORTHO05D001790 1.3e-19 101.3 298 76.2
SGA_v2.0_scaffold42G15974 Striga asiatica HOM05D001827 ORTHO05D001790 1.3e-19 101.3 297 73.4
Ca_12442_v3 Cicer arietinum L. HOM05D001827 ORTHO05D001790 1.7e-19 100.9 91 60.4
TWI38G0190 Tripterygium wilfordii HOM05D001827 ORTHO05D001790 1.7e-19 100.9 86 60.5
MELO3C014113.2 Cucumis melo HOM05D001827 ORTHO05D001790 2.2e-19 100.5 279 58.8
TPR.G24110 Trifolium pratense HOM05D001827 ORTHO05D001790 2.2e-19 100.5 90 63.3
Oeu005954.1 Olea europaea HOM05D001827 ORTHO05D001790 2.9e-19 100.1 86 65.1
MSTRG.14494 Avicennia marina HOM05D001827 ORTHO05D001790 3.8e-19 99.8 85 63.5
MSTRG.7004 Avicennia marina HOM05D001827 ORTHO05D001790 1.1e-18 98.2 86 61.6
Phvul.008G279900 Phaseolus vulgaris HOM05D001827 ORTHO05D001790 2.5e-18 97.1 86 60.5
Hund23030 Selenicereus undatus HOM05D001827 ORTHO05D001790 2.5e-18 97.1 309 48.2
VMungo0647G0995 Vigna mungo HOM05D001827 ORTHO05D001790 2.5e-18 97.1 86 60.5
CiPaw.12G139200 Carya illinoinensis HOM05D001827 ORTHO05D001790 3.2e-18 96.7 86 60.5
Medtr3g060660 Medicago truncatula HOM05D001827 ORTHO05D001790 9.4e-18 95.1 88 61.4
PSO210G6911 Papaver somniferum HOM05D001827 ORTHO05D001790 1.6e-17 94.4 314 75.5
RcHm_v2.0_Chr5g0076551 Rosa chinensis HOM05D001827 ORTHO05D001790 2.1e-17 94.0 86 62.8
PSO210G4928 Papaver somniferum HOM05D001827 ORTHO05D001790 2.7e-17 93.6 314 75.8
EL10Ac4g07523 Beta vulgaris HOM05D001827 ORTHO05D001790 3.6e-17 93.2 308 64.9
Aa31LG3G11780 Aethionema arabicum HOM05D001827 ORTHO05D001790 6.1e-17 92.4 293 30.0
Nitab4.5_0004583g0090 Nicotiana tabacum HOM05D001827 ORTHO05D001790 6.1e-17 92.4 316 50.6
SalBow8G5165 Salvia bowleyana HOM05D001827 ORTHO05D001790 6.1e-17 92.4 88 59.1
Dinv40871 Davidia involucrata HOM05D001827 ORTHO05D001790 7.9e-17 92.0 73 72.6
THA.LOC104817709 Tarenaya hassleriana HOM05D001827 ORTHO05D001790 7.9e-17 92.0 286 45.5
Gohir.D13G135250 Gossypium hirsutum HOM05D001827 ORTHO05D001790 1.0e-16 91.7 279 63.8
Gorai.013G151600 Gossypium raimondii HOM05D001827 ORTHO05D001790 1.0e-16 91.7 279 62.7
PGR083G1584 Punica granatum HOM05D001827 ORTHO05D001790 1.0e-16 91.7 86 59.3
Hund01866 Selenicereus undatus HOM05D001827 ORTHO05D001790 2.3e-16 90.5 102 52.9
Nitab4.5_0003692g0050 Nicotiana tabacum HOM05D001827 ORTHO05D001790 3.0e-16 90.1 110 49.1
Peaxi162Scf00006g00416 Petunia axillaris HOM05D001827 ORTHO05D001790 3.9e-16 89.7 111 47.7
Aqoxy1G04278 Aquilegia oxysepala HOM05D001827 ORTHO05D001790 5.1e-16 89.4 87 60.9
AL8G31440 Arabidopsis lyrata HOM05D001827 ORTHO05D001790 6.7e-16 89.0 89 62.9
AL236U10010 Arabidopsis lyrata HOM05D001827 ORTHO05D001790 8.8e-16 88.6 89 61.8
AT5G55860 Arabidopsis thaliana HOM05D001827 ORTHO05D001790 8.8e-16 88.6 89 61.8
DCAR_013243 Daucus carota HOM05D001827 ORTHO05D001790 1.1e-15 88.2 284 70.8
Carub.0008s1622 Capsella rubella HOM05D001827 ORTHO05D001790 1.5e-15 87.8 89 61.8
MSTRG.13024 Avicennia marina HOM05D001827 ORTHO05D001790 2.0e-15 87.4 298 59.7
A10p13080 Brassica napus HOM05D001827 ORTHO05D001790 7.4e-15 85.5 89 60.7
Thhalv10012934m.g Eutrema salsugineum HOM05D001827 ORTHO05D001790 7.4e-15 85.5 89 60.7
Sp6g17740 Schrenkiella parvula HOM05D001827 ORTHO05D001790 7.4e-15 85.5 89 60.7
BcaNung07010 Brassica carinata HOM05D001827 ORTHO05D001790 1.3e-14 84.7 89 62.9
A03p13780 Brassica napus HOM05D001827 ORTHO05D001790 1.3e-14 84.7 89 59.6
CSS0038969 Camellia sinensis var. sinensis HOM05D001827 ORTHO05D001790 1.3e-14 84.7 86 60.5
CSS0046389 Camellia sinensis var. sinensis HOM05D001827 ORTHO05D001790 1.3e-14 84.7 86 60.5
Cpa.g.sc12.122 Carica papaya HOM05D001827 ORTHO05D001790 1.7e-14 84.3 87 57.5
BraA03t10681Z Brassica rapa HOM05D001827 ORTHO05D001790 2.2e-14 84.0 87 57.5
unitig_0.g2012 Utricularia gibba HOM05D001827 ORTHO05D001790 2.8e-14 83.6 87 54.0
Sed0003258 Sechium edule HOM05D001827 ORTHO05D001790 4.8e-14 82.8 309 55.7
C03p16210 Brassica napus HOM05D001827 ORTHO05D001790 6.3e-14 82.4 89 59.6
Psat2g006880 Pisum sativum HOM05D001827 ORTHO05D001790 6.3e-14 82.4 86 57.0
BcaC04g20191 Brassica carinata HOM05D001827 ORTHO05D001790 1.1e-13 81.6 89 60.7
C09p46840 Brassica napus HOM05D001827 ORTHO05D001790 1.1e-13 81.6 89 60.7
BolC9t57534H Brassica oleracea HOM05D001827 ORTHO05D001790 1.1e-13 81.6 89 60.7
Nn1g07551 Nelumbo nucifera HOM05D001827 ORTHO05D001790 1.1e-13 81.6 86 54.7
BolC3t14044H Brassica oleracea HOM05D001827 ORTHO05D001790 6.9e-13 79.0 90 56.7
Lj1C892G3 Lonicera japonica HOM05D001827 ORTHO05D001790 6.9e-13 79.0 101 53.5
Migut.H01749 Erythranthe guttata HOM05D001827 ORTHO05D001790 9.1e-13 78.6 61 68.9
CARHR269240 Cardamine hirsuta HOM05D001827 ORTHO05D001790 1.5e-12 77.8 90 55.6
Aa31LG5G11980 Aethionema arabicum HOM05D001812 ORTHO05D001874 4.5e-12 76.3 274 27.4
Oeu005481.1 Olea europaea HOM05D001827 ORTHO05D001790 1.3e-11 74.7 52 76.9
MBI14_g13533_MAGBIO Magnolia biondii HOM05D001827 ORTHO05D001790 1.7e-11 74.3 311 53.4
TPR.G8584 Trifolium pratense HOM05D001827 ORTHO05D001790 2.9e-11 73.6 294 27.2
RcHm_v2.0_Chr5g0076561 Rosa chinensis HOM05D001827 ORTHO05D001790 5.0e-11 72.8 60 68.3
CDE02G3428 Ceratophyllum demersum HOM05D001827 ORTHO05D001790 1.4e-10 71.2 292 32.9
Lj6C241T4 Lonicera japonica HOM05D001827 ORTHO05D001790 1.4e-10 71.2 86 51.2
HPP92_003811 Vanilla planifolia HOM05D001827 ORTHO05D001790 2.5e-10 70.5 89 51.7
Medtr5g096080 Medicago truncatula HOM05D001827 ORTHO05D001790 3.2e-10 70.1 298 25.2
ECA240G1712 Erigeron canadensis HOM05D001812 ORTHO05D001874 7.2e-10 68.9 86 51.2
Medtr3g007920 Medicago truncatula HOM05D001827 ORTHO05D001790 9.4e-10 68.6 298 24.8
MBI14_g08894_MAGBIO Magnolia biondii HOM05D001827 ORTHO05D001790 1.4e-08 64.7 51 68.6
CDE01G0234 Ceratophyllum demersum HOM05D001827 ORTHO05D001790 8.8e-08 62.0 88 47.7
Lsat_1_v5_gn_9_88840 Lactuca sativa HOM05D001827 ORTHO05D001790 8.8e-08 62.0 89 52.8
Gohir.A13G131833 Gossypium hirsutum HOM05D001827 ORTHO05D001790 2.0e-07 60.8 69 53.6
HanXRQChr03g0080331 Helianthus annuus HOM05D001827 ORTHO05D001790 2.0e-07 60.8 85 45.9
SEGI_16968 Sequoiadendron giganteum HOM05D001827 ORTHO05D001790 2.0e-07 60.8 104 40.4
Gohir.A01G092700 Gossypium hirsutum HOM05D001827 ORTHO05D001790 3.3e-07 60.1 82 43.9
Ciclev10006878m.g Citrus clementina HOM05D001827 ORTHO05D001790 4.4e-07 59.7 44 77.3
THA.LOC104815691 Tarenaya hassleriana HOM05D001827 ORTHO05D001790 9.7e-07 58.5 85 42.4
THA.LOC104810293 Tarenaya hassleriana HOM05D001827 ORTHO05D001790 1.3e-06 58.2 87 44.8
MBI14_g08895_MAGBIO Magnolia biondii HOM05D001827 ORTHO05D001790 1.7e-06 57.8 33 93.9


User provided reference genes

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