Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR481G0008 Trochodendron aralioides HOM05D008333 ORTHO05D010371 1.5e-101 372.9 187 100.0
TAR481G0013 Trochodendron aralioides HOM05D008333 ORTHO05D010371 7.6e-98 360.5 187 97.3
TAR371G0090 Trochodendron aralioides HOM05D008333 ORTHO05D010371 1.8e-38 163.3 121 67.8
Nn4g23042 Nelumbo nucifera HOM05D008333 ORTHO05D010371 5.6e-32 141.7 192 46.4
Nn3g17126 Nelumbo nucifera HOM05D008333 ORTHO05D010371 1.5e-29 133.7 129 54.3
Potri.017G077100 Populus trichocarpa HOM05D008333 ORTHO05D010371 1.2e-21 107.5 157 36.9
Duzib147G0630 Durio zibethinus HOM05D008333 ORTHO05D010371 5.4e-19 98.6 164 34.1
COL.COLO4_25183 Corchorus olitorius HOM05D008333 ORTHO05D010371 3.5e-18 95.9 118 37.3
CSS0029447 Camellia sinensis var. sinensis HOM05D008333 ORTHO05D010371 1.0e-17 94.4 158 32.3
CSS0048142 Camellia sinensis var. sinensis HOM05D008333 ORTHO05D010371 1.0e-17 94.4 158 32.3
Thecc.04G074300 Theobroma cacao HOM05D008333 ORTHO05D010371 5.6e-16 88.6 104 39.4
Gorai.006G024100 Gossypium raimondii HOM05D008333 ORTHO05D010371 7.3e-16 88.2 123 35.0
Eucgr.L02760 Eucalyptus grandis HOM05D008333 ORTHO05D010371 9.5e-16 87.8 127 36.2
Eucgr.I01914 Eucalyptus grandis HOM05D008333 ORTHO05D010371 1.6e-15 87.0 157 33.8
Gohir.D09G020400 Gossypium hirsutum HOM05D008333 ORTHO05D010371 2.1e-15 86.7 141 34.0
Actinidia38746 Actinidia chinensis HOM05D008333 ORTHO05D010371 4.7e-15 85.5 164 33.5
Gohir.A09G021000 Gossypium hirsutum HOM05D008333 ORTHO05D010371 6.2e-15 85.1 117 35.0
Manes.17G020900 Manihot esculenta HOM05D008333 ORTHO05D010371 8.1e-15 84.7 121 36.4
Eucgr.I01916 Eucalyptus grandis HOM05D008333 ORTHO05D010371 1.4e-14 84.0 127 34.6
Cfa007508 Carpinus fangiana HOM05D008333 ORTHO05D010371 5.2e-14 82.0 147 39.5
FvH4_6g49300 Fragaria vesca HOM05D008333 ORTHO05D010371 5.2e-14 82.0 130 30.8
FAN14G1695 Fragaria x ananassa HOM05D008333 ORTHO05D010371 5.2e-14 82.0 130 32.3
FAN14G3781 Fragaria x ananassa HOM05D000349 ORTHO05D001782 5.2e-14 82.0 130 32.3
QL02p080535 Quercus lobata HOM05D008333 ORTHO05D010371 8.9e-14 81.3 158 34.8
Cfa021167 Carpinus fangiana HOM05D008333 ORTHO05D010371 1.2e-13 80.9 126 38.1
Haze_14585 Corylus avellana HOM05D008333 ORTHO05D010371 1.5e-13 80.5 116 40.5
FvH4_6g49320 Fragaria vesca HOM05D008333 ORTHO05D010371 2.0e-13 80.1 130 32.3
FAN14G5614 Fragaria x ananassa HOM05D008333 ORTHO05D010371 2.0e-13 80.1 130 32.3
VMungo0464G0738 Vigna mungo HOM05D008333 ORTHO05D010371 5.8e-13 78.6 148 32.4
MBI05_g05683_MAGBIO Magnolia biondii HOM05D011927 ORTHO05D010887 7.6e-13 78.2 114 41.2
CSS0005469 Camellia sinensis var. sinensis HOM05D008333 ORTHO05D010371 1.7e-12 77.0 146 31.5
Phvul.004G025900 Phaseolus vulgaris HOM05D008333 ORTHO05D010371 1.7e-12 77.0 127 31.5
Gorai.006G023800 Gossypium raimondii HOM05D008333 ORTHO05D010371 2.9e-12 76.3 105 34.3
Prupe.3G272200 Prunus persica HOM05D008333 ORTHO05D010371 4.9e-12 75.5 158 29.7
RcHm_v2.0_Chr2g0169171 Rosa chinensis HOM05D008333 ORTHO05D010371 1.1e-11 74.3 126 31.0
MBI03_g33921_MAGBIO Magnolia biondii HOM05D011927 ORTHO05D010887 1.4e-11 73.9 136 37.5
MBI18_g01155_MAGBIO Magnolia biondii HOM05D011927 ORTHO05D010887 1.9e-11 73.6 115 36.5
Gohir.D11G275775 Gossypium hirsutum HOM05D008333 ORTHO05D010371 2.4e-11 73.2 107 36.4
Gorai.007G297900 Gossypium raimondii HOM05D008333 ORTHO05D010371 2.4e-11 73.2 107 36.4
MBI06_g03980_MAGBIO Magnolia biondii HOM05D011927 ORTHO05D010887 2.4e-11 73.2 137 35.0
Os06g0580100 Oryza sativa ssp. japonica HOM05D009627 ORTHO05D010887 2.4e-11 73.2 119 33.6
CSS0007512 Camellia sinensis var. sinensis HOM05D008333 ORTHO05D010371 3.2e-11 72.8 135 31.9
RcHm_v2.0_Chr2g0169181 Rosa chinensis HOM05D008333 ORTHO05D010371 3.2e-11 72.8 118 31.4
Lj7P401T71 Lonicera japonica HOM05D008333 ORTHO05D010371 5.4e-11 72.0 136 33.1
CiPaw.03G030300 Carya illinoinensis HOM05D008333 ORTHO05D010371 7.1e-11 71.6 133 30.1
MBI05_g28284_MAGBIO Magnolia biondii HOM05D000034 ORTHO05D010887 1.6e-10 70.5 114 38.6
Rhsim08G0065100 Rhododendron simsii HOM05D008333 ORTHO05D010371 2.1e-10 70.1 133 29.3
Rhsim08G0065300 Rhododendron simsii HOM05D008333 ORTHO05D010371 2.7e-10 69.7 154 28.6
Rhsim08G0065700 Rhododendron simsii HOM05D008333 ORTHO05D010371 2.7e-10 69.7 133 29.3
MBI03_g32214_MAGBIO Magnolia biondii HOM05D011927 ORTHO05D010887 1.0e-09 67.8 115 40.9
MBI06_g46441_MAGBIO Magnolia biondii HOM05D011927 ORTHO05D010887 1.3e-09 67.4 122 34.4
MBI18_g00962_MAGBIO Magnolia biondii HOM05D011927 ORTHO05D010887 1.3e-09 67.4 108 37.0
MBI18_g41917_MAGBIO Magnolia biondii HOM05D011927 ORTHO05D010887 1.3e-09 67.4 141 31.2
Gohir.D09G020550 Gossypium hirsutum HOM05D008333 ORTHO05D010371 5.1e-09 65.5 91 34.1
Os02g0216300 Oryza sativa ssp. japonica HOM05D009627 ORTHO05D010887 6.6e-09 65.1 119 32.8
Zm00001eb277260 Zea mays HOM05D009627 ORTHO05D010887 8.6e-09 64.7 125 32.8
Os06g0147100 Oryza sativa ssp. japonica HOM05D009627 ORTHO05D010887 5.6e-08 62.0 116 36.2
Gorai.006G024300 Gossypium raimondii HOM05D008333 ORTHO05D010371 1.6e-07 60.5 104 33.7
Glyma.18G255500 Glycine max HOM05D008333 ORTHO05D010371 2.1e-07 60.1 122 27.0
Rhsim08G0065800 Rhododendron simsii HOM05D008333 ORTHO05D010371 2.8e-07 59.7 168 25.6
Rhsim08G0066000 Rhododendron simsii HOM05D008333 ORTHO05D010371 1.1e-06 57.8 129 27.1
TPR.G7262 Trifolium pratense HOM05D008333 ORTHO05D010371 1.1e-06 57.8 151 27.2
Rhsim08G0065400 Rhododendron simsii HOM05D008333 ORTHO05D010371 1.4e-06 57.4 134 25.4
Os01g0714600 Oryza sativa ssp. japonica HOM05D009627 ORTHO05D010887 4.0e-06 55.8 108 36.1


User provided reference genes

Program Settings