Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR462G0003 Trochodendron aralioides HOM05D002377 ORTHO05D002656 2.8e-37 158.7 118 100.0
TAR371G0143 Trochodendron aralioides HOM05D002377 ORTHO05D002656 1.1e-20 103.6 55 80.0
Sed0012433 Sechium edule HOM05D002377 ORTHO05D002656 8.7e-15 84.0 53 62.3
Actinidia18943 Actinidia chinensis HOM05D002377 ORTHO05D002656 1.9e-14 82.8 54 63.0
Manes.02G066800 Manihot esculenta HOM05D002377 ORTHO05D002656 7.4e-14 80.9 55 60.0
MBI16_g25111_MAGBIO Magnolia biondii HOM05D002377 ORTHO05D002656 9.6e-14 80.5 55 63.6
Actinidia36310 Actinidia chinensis HOM05D002377 ORTHO05D002656 1.3e-13 80.1 55 65.5
CSS0036143 Camellia sinensis var. sinensis HOM05D002377 ORTHO05D002656 1.3e-13 80.1 51 68.6
MBI09_g41182_MAGBIO Magnolia biondii HOM05D002377 ORTHO05D002656 1.3e-13 80.1 55 61.8
Thecc.04G137200 Theobroma cacao HOM05D002377 ORTHO05D002656 2.1e-13 79.3 56 62.5
Nn4g23747 Nelumbo nucifera HOM05D002377 ORTHO05D002656 3.7e-13 78.6 51 66.7
CSS0047835 Camellia sinensis var. sinensis HOM05D002377 ORTHO05D002656 4.8e-13 78.2 56 62.5
ClCG07G016290 Citrullus lanatus HOM05D002377 ORTHO05D002656 4.8e-13 78.2 50 62.0
Duzib138G1604 Durio zibethinus HOM05D002377 ORTHO05D002656 4.8e-13 78.2 56 62.5
Gohir.D07G075800 Gossypium hirsutum HOM05D002377 ORTHO05D002656 6.2e-13 77.8 56 60.7
Gorai.001G080000 Gossypium raimondii HOM05D002377 ORTHO05D002656 6.2e-13 77.8 56 60.7
THA.LOC104823872 Tarenaya hassleriana HOM05D002377 ORTHO05D002656 8.1e-13 77.4 51 58.8
PSO017G0035 Papaver somniferum HOM05D002377 ORTHO05D002656 1.1e-12 77.0 56 58.9
PSO478G3393 Papaver somniferum HOM05D002377 ORTHO05D002656 1.1e-12 77.0 56 58.9
CSS0036215 Camellia sinensis var. sinensis HOM05D002377 ORTHO05D002656 1.4e-12 76.6 51 66.7
Gohir.A07G071300 Gossypium hirsutum HOM05D002377 ORTHO05D002656 1.4e-12 76.6 54 63.0
Eucgr.K02999 Eucalyptus grandis HOM05D002377 ORTHO05D002656 1.8e-12 76.3 53 58.5
QL02p052529 Quercus lobata HOM05D002377 ORTHO05D002656 3.1e-12 75.5 52 57.7
COL.COLO4_16190 Corchorus olitorius HOM05D002377 ORTHO05D007658 5.3e-12 74.7 56 57.1
Actinidia15869 Actinidia chinensis HOM05D002377 ORTHO05D002656 6.9e-12 74.3 55 60.0
GSVIVG01036454001 Vitis vinifera HOM05D002377 ORTHO05D002656 6.9e-12 74.3 50 64.0
Atru.chr8.841 Acer truncatum HOM05D002377 ORTHO05D002656 1.2e-11 73.6 54 55.6
Actinidia17617 Actinidia chinensis HOM05D002377 ORTHO05D002656 1.2e-11 73.6 51 62.7
Lj9C429G13 Lonicera japonica HOM05D002377 ORTHO05D002656 1.2e-11 73.6 56 57.1
GSVIVG01036441001 Vitis vinifera HOM05D002377 ORTHO05D002656 1.2e-11 73.6 55 56.4
Atru.chr9.780 Acer truncatum HOM05D002377 ORTHO05D002656 1.5e-11 73.2 56 55.4
Potri.018G024400 Populus trichocarpa HOM05D002377 ORTHO05D002656 1.5e-11 73.2 49 57.1
Cpa.g.sc179.21 Carica papaya HOM05D002377 ORTHO05D002656 2.0e-11 72.8 55 56.4
Sabra18G0026900 Salix brachista HOM05D002377 ORTHO05D002656 4.5e-11 71.6 49 55.1
Manes.01G108500 Manihot esculenta HOM05D002377 ORTHO05D002656 5.8e-11 71.2 56 53.6
Thecc.03G029500 Theobroma cacao HOM05D002377 ORTHO05D002656 5.8e-11 71.2 51 62.7
Potri.006G257400 Populus trichocarpa HOM05D002377 ORTHO05D002656 7.6e-11 70.9 54 51.9
Sed0013300 Sechium edule HOM05D002377 ORTHO05D002656 7.6e-11 70.9 52 53.8
Haze_14132 Corylus avellana HOM05D002377 ORTHO05D002656 9.9e-11 70.5 52 51.9
Cfa007943 Carpinus fangiana HOM05D002377 ORTHO05D002656 1.3e-10 70.1 52 51.9
MELO3C018942.2 Cucumis melo HOM05D002377 ORTHO05D002656 1.7e-10 69.7 52 51.9
Hma1.2p1_0136F.1_g062080 Hydrangea macrophylla HOM05D002377 ORTHO05D002656 1.7e-10 69.7 56 51.8
THA.LOC104805549 Tarenaya hassleriana HOM05D002377 ORTHO05D002656 1.7e-10 69.7 51 52.9
Dinv07367 Davidia involucrata HOM05D002377 ORTHO05D002656 2.2e-10 69.3 51 56.9
TWI74G0736 Tripterygium wilfordii HOM05D002377 ORTHO05D002656 2.2e-10 69.3 49 63.3
ATR0589G037 Amborella trichopoda HOM05D002377 ORTHO05D002656 2.9e-10 68.9 53 58.5
Cpa.g.sc13.40 Carica papaya HOM05D002377 ORTHO05D002656 2.9e-10 68.9 56 48.2
CsaV3_4G008820 Cucumis sativus L. HOM05D002377 ORTHO05D002656 2.9e-10 68.9 52 53.8
Rhsim10G0063300 Rhododendron simsii HOM05D002377 ORTHO05D002656 2.9e-10 68.9 51 58.8
AL7G51760 Arabidopsis lyrata HOM05D002377 ORTHO05D002656 3.8e-10 68.6 46 58.7
Ciclev10013338m.g Citrus clementina HOM05D002377 ORTHO05D002656 6.4e-10 67.8 58 51.7
Aqoxy3G00365 Aquilegia oxysepala HOM05D002377 ORTHO05D002656 1.1e-09 67.0 54 53.7
QL10p022421 Quercus lobata HOM05D002377 ORTHO05D002656 1.1e-09 67.0 59 49.2
QL10p023680 Quercus lobata HOM05D002377 ORTHO05D002656 1.1e-09 67.0 59 49.2
vmacro05571 Vaccinium macrocarpon HOM05D002377 ORTHO05D002656 1.4e-09 66.6 56 55.4
PSO782G5135 Papaver somniferum HOM05D002377 ORTHO05D002656 1.9e-09 66.2 51 51.0
TWI77G0863 Tripterygium wilfordii HOM05D002377 ORTHO05D002656 1.9e-09 66.2 50 58.0
BcaC08g44388 Brassica carinata HOM05D002377 ORTHO05D002656 2.4e-09 65.9 54 51.9
AT5G38690 Arabidopsis thaliana HOM05D002377 ORTHO05D002656 3.2e-09 65.5 46 56.5
Gohir.D12G265900 Gossypium hirsutum HOM05D002377 ORTHO05D002656 3.2e-09 65.5 51 56.9
Nn3g17762 Nelumbo nucifera HOM05D002377 ORTHO05D002656 3.2e-09 65.5 55 52.7
RcHm_v2.0_Chr4g0409761 Rosa chinensis HOM05D002377 ORTHO05D002656 3.2e-09 65.5 56 44.6
FAN02G2893 Fragaria x ananassa HOM05D002377 ORTHO05D002656 4.2e-09 65.1 56 44.6
FAN05G2582 Fragaria x ananassa HOM05D002377 ORTHO05D002656 4.2e-09 65.1 56 44.6
PGR004G2471 Punica granatum HOM05D002377 ORTHO05D002656 5.5e-09 64.7 53 49.1
CiPaw.03G059900 Carya illinoinensis HOM05D002377 ORTHO05D002656 7.1e-09 64.3 52 51.9
Dinv34846 Davidia involucrata HOM05D002377 ORTHO05D002656 7.1e-09 64.3 56 53.6
FAN09G2786 Fragaria x ananassa HOM05D002377 ORTHO05D002656 7.1e-09 64.3 56 44.6
Sabra06G0201400 Salix brachista HOM05D002377 ORTHO05D002656 7.1e-09 64.3 54 51.9
BcaC08g44385 Brassica carinata HOM05D002377 ORTHO05D002656 9.3e-09 63.9 50 48.0
C06p18180 Brassica napus HOM05D002377 ORTHO05D002656 9.3e-09 63.9 50 48.0
BolC6t37028H Brassica oleracea HOM05D002377 ORTHO05D002656 9.3e-09 63.9 50 48.0
BraA07t29694Z Brassica rapa HOM05D002377 ORTHO05D002656 9.3e-09 63.9 50 48.0
Rhsim12G0144500 Rhododendron simsii HOM05D002377 ORTHO05D002656 9.3e-09 63.9 49 51.0
GSVIVG01008246001 Vitis vinifera HOM05D002377 ORTHO05D002656 9.3e-09 63.9 51 54.9
A07p19760 Brassica napus HOM05D002377 ORTHO05D002656 1.2e-08 63.5 50 48.0
Carub.0007s3716 Capsella rubella HOM05D002377 ORTHO05D002656 1.2e-08 63.5 46 58.7
Gohir.A12G265700 Gossypium hirsutum HOM05D002377 ORTHO05D002656 1.2e-08 63.5 51 54.9
Gorai.008G285600 Gossypium raimondii HOM05D002377 ORTHO05D002656 1.2e-08 63.5 51 54.9
HPP92_008846 Vanilla planifolia HOM05D002377 ORTHO05D002656 1.2e-08 63.5 51 43.1
BcaB03g15217 Brassica carinata HOM05D002377 ORTHO05D002656 1.6e-08 63.2 51 49.0
BraA07t29676Z Brassica rapa HOM05D002377 ORTHO05D002656 1.6e-08 63.2 50 48.0
Sp7g13280 Schrenkiella parvula HOM05D002377 ORTHO05D002656 1.6e-08 63.2 50 50.0
COL.COLO4_16236 Corchorus olitorius HOM05D002377 ORTHO05D002656 2.1e-08 62.8 54 55.6
vmacro22490 Vaccinium macrocarpon HOM05D002377 ORTHO05D002656 2.1e-08 62.8 54 50.0
Ah.10g037560 Amaranthus hybridus HOM05D002377 ORTHO05D002656 2.7e-08 62.4 52 48.1
FvH4_6g45330 Fragaria vesca HOM05D002377 ORTHO05D002656 4.6e-08 61.6 56 42.9
FAN14G1662 Fragaria x ananassa HOM05D002377 ORTHO05D002656 4.6e-08 61.6 56 42.9
Lj2g0023885 Lotus japonicus HOM05D002377 ORTHO05D002656 4.6e-08 61.6 51 56.9
Sp7g03230 Schrenkiella parvula HOM05D002377 ORTHO05D002656 6.0e-08 61.2 50 48.0
Aa31LG9G16950 Aethionema arabicum HOM05D002377 ORTHO05D002656 7.9e-08 60.8 46 52.2
A07p19910 Brassica napus HOM05D002377 ORTHO05D002656 7.9e-08 60.8 50 44.0
FAN09G2345 Fragaria x ananassa HOM05D002377 ORTHO05D002656 7.9e-08 60.8 47 53.2
Rhsim08G0079400 Rhododendron simsii HOM05D002377 ORTHO05D002656 7.9e-08 60.8 52 53.8
vmacro18107 Vaccinium macrocarpon HOM05D002377 ORTHO05D002656 1.0e-07 60.5 52 51.9
BcaC08g44412 Brassica carinata HOM05D002377 ORTHO05D002656 1.3e-07 60.1 49 46.9
C06p18490 Brassica napus HOM05D002377 ORTHO05D002656 1.3e-07 60.1 49 46.9
BcaB08g35568 Brassica carinata HOM05D002377 ORTHO05D002656 3.0e-07 58.9 50 46.0
Sp7g03240 Schrenkiella parvula HOM05D000305 ORTHO05D000065 3.0e-07 58.9 50 48.0
BcaB02g07988 Brassica carinata HOM05D002377 ORTHO05D002656 3.9e-07 58.5 50 46.0
BcaB02g07990 Brassica carinata HOM05D002377 ORTHO05D002656 3.9e-07 58.5 50 46.0
Thhalv10015379m.g Eutrema salsugineum HOM05D002377 ORTHO05D002656 3.9e-07 58.5 51 51.0
FvH4_6g41910 Fragaria vesca HOM05D002377 ORTHO05D002656 3.9e-07 58.5 47 51.1
FAN14G2079 Fragaria x ananassa HOM05D002377 ORTHO05D002656 3.9e-07 58.5 47 51.1
Glyma.19G045700 Glycine max HOM05D002377 ORTHO05D002656 3.9e-07 58.5 54 50.0
Aqoxy3G03923 Aquilegia oxysepala HOM05D002377 ORTHO05D002656 5.1e-07 58.2 54 48.1
FvH4_6g41810 Fragaria vesca HOM05D002377 ORTHO05D002656 5.1e-07 58.2 47 51.1
FAN02G0398 Fragaria x ananassa HOM05D002377 ORTHO05D002656 5.1e-07 58.2 47 51.1
FAN14G1062 Fragaria x ananassa HOM05D002377 ORTHO05D002656 5.1e-07 58.2 47 51.1
A07p33880 Brassica napus HOM05D002377 ORTHO05D002656 6.7e-07 57.8 52 48.1
BraA07t31014Z Brassica rapa HOM05D002377 ORTHO05D002656 6.7e-07 57.8 52 48.1
Prupe.3G239500 Prunus persica HOM05D002377 ORTHO05D002656 6.7e-07 57.8 54 46.3
BcaC08g46154 Brassica carinata HOM05D002377 ORTHO05D002656 8.7e-07 57.4 52 48.1
C06p42990 Brassica napus HOM05D002377 ORTHO05D002656 8.7e-07 57.4 52 48.1
BolC6t39138H Brassica oleracea HOM05D002377 ORTHO05D002656 8.7e-07 57.4 52 48.1
SEGI_24532 Sequoiadendron giganteum HOM05D002377 ORTHO05D002656 8.7e-07 57.4 51 45.1
Sc10g0001320 Simmondsia chinensis HOM05D002377 ORTHO05D002656 8.7e-07 57.4 51 45.1
C06p18200 Brassica napus HOM05D002377 ORTHO05D002656 1.1e-06 57.0 42 50.0
BolC6t37032H Brassica oleracea HOM05D002377 ORTHO05D002656 1.1e-06 57.0 42 50.0
FAN05G0313 Fragaria x ananassa HOM05D002377 ORTHO05D002656 1.1e-06 57.0 47 48.9
Rhsim08G0213400 Rhododendron simsii HOM05D002377 ORTHO05D002656 1.1e-06 57.0 56 50.0
Thhalv10028126m.g Eutrema salsugineum HOM05D002377 ORTHO05D002656 1.5e-06 56.6 45 48.9
Glyma.13G046800 Glycine max HOM05D002377 ORTHO05D002656 1.5e-06 56.6 54 48.1
Lalb_Chr21g0317891 Lupinus albus HOM05D002377 ORTHO05D002656 1.5e-06 56.6 56 46.4
Peaxi162Scf00501g00003 Petunia axillaris HOM05D002377 ORTHO05D002656 1.5e-06 56.6 54 46.3
Phvul.004G063500 Phaseolus vulgaris HOM05D002377 ORTHO05D002656 1.5e-06 56.6 53 45.3
RcHm_v2.0_Chr7g0218691 Rosa chinensis HOM05D002377 ORTHO05D029592 1.5e-06 56.6 51 49.0
Ah.16g101980 Amaranthus hybridus HOM05D002377 ORTHO05D002656 1.9e-06 56.2 51 49.0
Cc07_g08990 Coffea canephora HOM05D002377 ORTHO05D002656 1.9e-06 56.2 49 46.9
Medtr6g017265 Medicago truncatula HOM05D002377 ORTHO05D002656 2.5e-06 55.8 53 49.1
Nitab4.5_0000628g0170 Nicotiana tabacum HOM05D002377 ORTHO05D002656 2.5e-06 55.8 54 46.3
Nitab4.5_0007207g0020 Nicotiana tabacum HOM05D002377 ORTHO05D002656 2.5e-06 55.8 54 46.3
Aa31LG2G3640 Aethionema arabicum HOM05D002377 ORTHO05D002656 3.3e-06 55.5 51 47.1
AL2G26510 Arabidopsis lyrata HOM05D002377 ORTHO05D002656 3.3e-06 55.5 46 47.8
Thhalv10018457m.g Eutrema salsugineum HOM05D002377 ORTHO05D002656 3.3e-06 55.5 51 41.2
FAN02G2436 Fragaria x ananassa HOM05D002377 ORTHO05D002656 3.3e-06 55.5 47 48.9
HanXRQChr11g0324961 Helianthus annuus HOM05D002377 ORTHO05D002656 3.3e-06 55.5 52 50.0
A01p24770 Brassica napus HOM05D002377 ORTHO05D002656 4.3e-06 55.1 50 42.0
A10p09880 Brassica napus HOM05D002377 ORTHO05D002656 4.3e-06 55.1 50 40.0
BraA01t02388Z Brassica rapa HOM05D002377 ORTHO05D002656 4.3e-06 55.1 50 42.0
BraA10t43069Z Brassica rapa HOM05D002377 ORTHO05D002656 4.3e-06 55.1 50 40.0
Duzib205G0005 Durio zibethinus HOM05D002377 ORTHO05D002656 4.3e-06 55.1 50 56.0
VMungo0464G1834 Vigna mungo HOM05D002377 ORTHO05D002656 4.3e-06 55.1 55 45.5
BcaB02g07989 Brassica carinata HOM05D002377 ORTHO05D002656 5.6e-06 54.7 53 43.4
DCAR_015516 Daucus carota HOM05D002377 ORTHO05D002656 5.6e-06 54.7 37 62.2
ECA232G2661 Erigeron canadensis HOM05D002377 ORTHO05D002656 5.6e-06 54.7 43 53.5
HanXRQChr14g0438691 Helianthus annuus HOM05D002377 ORTHO05D002656 5.6e-06 54.7 52 48.1
BcaB05g24254 Brassica carinata HOM05D002377 ORTHO05D002656 9.6e-06 53.9 51 41.2
Carub.0002s1422 Capsella rubella HOM05D002377 ORTHO05D002656 9.6e-06 53.9 46 47.8
AUR62008967 Chenopodium quinoa HOM05D002377 ORTHO05D002656 9.6e-06 53.9 51 45.1
AUR62014536 Chenopodium quinoa HOM05D002377 ORTHO05D002656 9.6e-06 53.9 51 45.1


User provided reference genes

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