Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR425G0003 Trochodendron aralioides HOM05D005092 ORTHO05D006073 3.3e-113 411.8 212 100.0
Nn3g18958 Nelumbo nucifera HOM05D005092 ORTHO05D006073 1.8e-79 299.7 213 77.9
CSS0040137 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 6.7e-74 281.2 219 73.1
Gorai.008G256400 Gossypium raimondii HOM05D005092 ORTHO05D006073 2.5e-73 279.3 221 70.1
QL02p029645 Quercus lobata HOM05D005092 ORTHO05D006073 4.3e-73 278.5 223 70.4
Gohir.A12G238200 Gossypium hirsutum HOM05D005092 ORTHO05D006073 5.6e-73 278.1 221 70.1
PSO135G0789 Papaver somniferum HOM05D005092 ORTHO05D006073 1.6e-72 276.6 205 73.2
Gohir.D12G239300 Gossypium hirsutum HOM05D005092 ORTHO05D006073 6.2e-72 274.6 214 70.6
Dinv38813 Davidia involucrata HOM05D005092 ORTHO05D006073 1.1e-71 273.9 214 71.0
PSO384G1727 Papaver somniferum HOM05D005092 ORTHO05D006073 4.0e-71 271.9 213 72.3
Thecc.03G302300 Theobroma cacao HOM05D005092 ORTHO05D006073 5.3e-71 271.6 217 69.6
Haze_09102 Corylus avellana HOM05D005092 ORTHO05D006073 5.8e-70 268.1 216 69.0
Aqoxy7G00063 Aquilegia oxysepala HOM05D005092 ORTHO05D006073 2.2e-69 266.2 211 70.1
Cfa011974 Carpinus fangiana HOM05D005092 ORTHO05D006073 4.9e-69 265.0 216 68.5
Dinv37500 Davidia involucrata HOM05D005092 ORTHO05D006073 4.9e-69 265.0 168 81.5
EL10Ac5g12949 Beta vulgaris HOM05D005092 ORTHO05D006073 3.2e-68 262.3 216 69.9
Glyma.08G024900 Glycine max HOM05D005092 ORTHO05D006073 3.2e-68 262.3 220 68.2
Cc08_g16360 Coffea canephora HOM05D005092 ORTHO05D006073 4.2e-68 261.9 155 83.9
MBI07_g24777_MAGBIO Magnolia biondii HOM05D005092 ORTHO05D006073 5.5e-68 261.5 203 72.9
AUR62007009 Chenopodium quinoa HOM05D005092 ORTHO05D006073 7.1e-68 261.2 192 72.9
CiPaw.11G117500 Carya illinoinensis HOM05D005092 ORTHO05D006073 1.6e-67 260.0 223 67.7
Peaxi162Scf00117g00912 Petunia axillaris HOM05D005092 ORTHO05D006073 1.6e-67 260.0 178 77.5
Aa31LG2G1490 Aethionema arabicum HOM05D005092 ORTHO05D006073 2.7e-67 259.2 210 68.1
CARHR046440 Cardamine hirsuta HOM05D005092 ORTHO05D006073 2.7e-67 259.2 208 69.2
Potri.001G088300 Populus trichocarpa HOM05D005092 ORTHO05D006073 2.7e-67 259.2 210 68.6
CSS0038140 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 3.5e-67 258.8 208 71.2
HanXRQChr07g0190751 Helianthus annuus HOM05D005092 ORTHO05D006073 4.6e-67 258.5 156 82.7
AUR62019873 Chenopodium quinoa HOM05D005092 ORTHO05D006073 6.0e-67 258.1 215 70.2
CSS0022378 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 7.9e-67 257.7 208 70.7
Duzib068G1375 Durio zibethinus HOM05D005092 ORTHO05D006073 7.9e-67 257.7 208 68.8
Glyma.05G218800 Glycine max HOM05D005092 ORTHO05D006073 1.0e-66 257.3 220 67.3
CDE02G4008 Ceratophyllum demersum HOM05D005092 ORTHO05D006073 1.3e-66 256.9 207 69.1
Sp2g00240 Schrenkiella parvula HOM05D005092 ORTHO05D006073 1.3e-66 256.9 210 67.6
Duzib068G1058 Durio zibethinus HOM05D005092 ORTHO05D006073 2.3e-66 256.1 208 67.8
Thhalv10023690m.g Eutrema salsugineum HOM05D005092 ORTHO05D006073 2.3e-66 256.1 210 68.1
CSS0048233 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 3.0e-66 255.8 208 70.7
CDE08G0689 Ceratophyllum demersum HOM05D005092 ORTHO05D006073 3.0e-66 255.8 213 69.5
DCAR_006514 Daucus carota HOM05D005092 ORTHO05D006073 3.0e-66 255.8 194 72.7
Manes.01G045210 Manihot esculenta HOM05D005092 ORTHO05D006073 3.0e-66 255.8 215 67.9
Nitab4.5_0004515g0010 Nicotiana tabacum HOM05D005092 ORTHO05D006073 3.0e-66 255.8 212 68.9
Ah.07g197620 Amaranthus hybridus HOM05D005092 ORTHO05D006073 3.9e-66 255.4 216 67.1
AL2G10290 Arabidopsis lyrata HOM05D005092 ORTHO05D006073 3.9e-66 255.4 210 67.6
Hma1.2p1_0440F.1_g153550 Hydrangea macrophylla HOM05D005092 ORTHO05D006073 5.1e-66 255.0 162 80.9
Nitab4.5_0002367g0080 Nicotiana tabacum HOM05D005092 ORTHO05D006073 5.1e-66 255.0 161 82.0
Cpa.g.sc15.7 Carica papaya HOM05D005092 ORTHO05D006073 6.7e-66 254.6 225 66.7
Ah.12g052820 Amaranthus hybridus HOM05D005092 ORTHO05D006073 8.7e-66 254.2 166 77.7
Lj4g0014821 Lotus japonicus HOM05D005092 ORTHO05D006073 8.7e-66 254.2 215 66.5
BcaB07g31470 Brassica carinata HOM05D005092 ORTHO05D006073 1.5e-65 253.4 202 67.8
Carub.0002s0024 Capsella rubella HOM05D005092 ORTHO05D006073 1.5e-65 253.4 210 67.6
COL.COLO4_10743 Corchorus olitorius HOM05D005092 ORTHO05D006073 1.5e-65 253.4 205 66.3
Sabra01G0064600 Salix brachista HOM05D005092 ORTHO05D006073 1.5e-65 253.4 215 65.1
Ciclev10022161m.g Citrus clementina HOM05D005092 ORTHO05D006073 1.9e-65 253.1 218 66.1
Medtr8g099720 Medicago truncatula HOM05D005092 ORTHO05D006073 1.9e-65 253.1 185 69.2
CANSAT21G1519 Cannabis sativa HOM05D005092 ORTHO05D006073 2.5e-65 252.7 215 66.5
Lsat_1_v5_gn_6_9541 Lactuca sativa HOM05D005092 ORTHO05D006073 2.5e-65 252.7 186 71.0
Nitab4.5_0006302g0010 Nicotiana tabacum HOM05D005092 ORTHO05D006073 2.5e-65 252.7 192 74.0
AT1G64510 Arabidopsis thaliana HOM05D005092 ORTHO05D006073 4.3e-65 251.9 218 65.6
THA.LOC104809322 Tarenaya hassleriana HOM05D005092 ORTHO05D006073 4.3e-65 251.9 221 67.0
Solyc08g082690.2 Solanum lycopersicum HOM05D005092 ORTHO05D006073 1.3e-64 250.4 206 68.0
Sopen08g030910 Solanum pennellii HOM05D005092 ORTHO05D006073 1.3e-64 250.4 206 68.0
PGSC0003DMG400012136 Solanum tuberosum HOM05D005092 ORTHO05D006073 1.3e-64 250.4 206 68.0
MD14G1132700 Malus domestica HOM05D005092 ORTHO05D006073 1.6e-64 250.0 211 64.9
BraA09t37111Z Brassica rapa HOM05D005092 ORTHO05D006073 2.8e-64 249.2 212 66.0
Ca_17461_v3 Cicer arietinum L. HOM05D005092 ORTHO05D006073 2.8e-64 249.2 186 68.8
HanXRQChr17g0535041 Helianthus annuus HOM05D005092 ORTHO05D006073 2.8e-64 249.2 194 69.6
MD06G1111400 Malus domestica HOM05D005092 ORTHO05D006073 2.8e-64 249.2 155 78.7
TWI81G0988 Tripterygium wilfordii HOM05D005092 ORTHO05D006073 2.8e-64 249.2 216 63.9
BolC9t54667H Brassica oleracea HOM05D005092 ORTHO05D006073 3.7e-64 248.8 211 65.9
A09p14390 Brassica napus HOM05D005092 ORTHO05D006073 4.8e-64 248.4 206 67.5
C09p17730 Brassica napus HOM05D005092 ORTHO05D006073 4.8e-64 248.4 207 67.1
BolC9t54633H Brassica oleracea HOM05D005092 ORTHO05D006073 6.2e-64 248.1 209 66.5
Duzib068G0950 Durio zibethinus HOM05D005092 ORTHO05D006073 8.2e-64 247.7 214 65.9
FAN08G0879 Fragaria x ananassa HOM05D005092 ORTHO05D006073 8.2e-64 247.7 214 63.1
Phvul.002G300600 Phaseolus vulgaris HOM05D005092 ORTHO05D006073 8.2e-64 247.7 223 63.2
Actinidia04188 Actinidia chinensis HOM05D005092 ORTHO05D006073 1.1e-63 247.3 215 65.6
C09p17310 Brassica napus HOM05D005092 ORTHO05D006073 1.1e-63 247.3 207 66.7
Prupe.5G124200 Prunus persica HOM05D005092 ORTHO05D006073 1.4e-63 246.9 213 63.4
A09p14650 Brassica napus HOM05D005092 ORTHO05D006073 1.8e-63 246.5 206 67.0
BraA09t37086Z Brassica rapa HOM05D005092 ORTHO05D006073 1.8e-63 246.5 210 65.7
CDE02G0126 Ceratophyllum demersum HOM05D005092 ORTHO05D006073 2.4e-63 246.1 207 69.1
ATR0602G266 Amborella trichopoda HOM05D005092 ORTHO05D006073 3.1e-63 245.7 210 68.6
BcaC04g22575 Brassica carinata HOM05D005092 ORTHO05D006073 3.1e-63 245.7 209 66.0
FAN04G2351 Fragaria x ananassa HOM05D005092 ORTHO05D006073 3.1e-63 245.7 214 62.6
BcaB07g31497 Brassica carinata HOM05D005092 ORTHO05D006073 4.1e-63 245.4 208 66.8
RcHm_v2.0_Chr7g0186131 Rosa chinensis HOM05D005092 ORTHO05D006073 4.1e-63 245.4 209 64.1
FvH4_5g11660 Fragaria vesca HOM05D005092 ORTHO05D006073 5.3e-63 245.0 214 62.6
FAN18G1279 Fragaria x ananassa HOM05D005092 ORTHO05D006073 5.3e-63 245.0 214 62.6
FAN18G3046 Fragaria x ananassa HOM05D005092 ORTHO05D006073 5.3e-63 245.0 214 62.6
Sed0021119 Sechium edule HOM05D005092 ORTHO05D006073 5.3e-63 245.0 158 77.8
arahy.Tifrunner.gnm1.ann1.CJJ4VI Arachis hypogaea HOM05D005092 ORTHO05D006073 1.2e-62 243.8 163 74.8
Lalb_Chr09g0332211 Lupinus albus HOM05D005092 ORTHO05D006073 1.2e-62 243.8 217 63.1
FAN13G0604 Fragaria x ananassa HOM05D005092 ORTHO05D006073 1.5e-62 243.4 214 62.1
arahy.Tifrunner.gnm1.ann1.99ISIC Arachis hypogaea HOM05D005092 ORTHO05D006073 2.6e-62 242.7 163 74.2
Psat7g023960 Pisum sativum HOM05D005092 ORTHO05D006073 3.4e-62 242.3 212 64.2
CSS0033480 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 5.8e-62 241.5 220 65.0
PGR031G0045 Punica granatum HOM05D005092 ORTHO05D006073 7.6e-62 241.1 273 54.9
Atru.chr9.1939 Acer truncatum HOM05D005092 ORTHO05D006073 3.8e-61 238.8 219 61.6
Sc07g0010130 Simmondsia chinensis HOM05D005092 ORTHO05D006073 8.4e-61 237.7 211 64.5
Actinidia22183 Actinidia chinensis HOM05D005092 ORTHO05D006073 7.2e-60 234.6 215 61.9
Lj2A163T69 Lonicera japonica HOM05D005092 ORTHO05D006073 6.7e-58 228.0 222 59.5
TPR.G3401 Trifolium pratense HOM05D005092 ORTHO05D006073 1.1e-57 227.3 197 63.5
BcaC04g22614 Brassica carinata HOM05D005092 ORTHO05D006073 7.4e-57 224.6 195 64.6
Lj8A204G63 Lonicera japonica HOM05D005092 ORTHO05D006073 9.7e-57 224.2 212 61.3
Nitab4.5_0015800g0020 Nicotiana tabacum HOM05D005092 ORTHO05D006073 9.7e-57 224.2 214 62.6
SalBow8G0392 Salvia bowleyana HOM05D005092 ORTHO05D006073 1.4e-55 220.3 203 60.1
Rhsim02G0248400 Rhododendron simsii HOM05D005092 ORTHO05D006073 5.3e-55 218.4 222 59.0
HanXRQChr17g0534641 Helianthus annuus HOM05D005092 ORTHO05D006073 1.2e-54 217.2 123 86.2
MELO3C005759.2 Cucumis melo HOM05D005092 ORTHO05D006073 4.5e-54 215.3 208 60.1
MSTRG.14949 Avicennia marina HOM05D005092 ORTHO05D006073 5.9e-54 214.9 220 60.0
Hund11375 Selenicereus undatus HOM05D005092 ORTHO05D006073 1.0e-53 214.2 219 56.2
Migut.M00752 Erythranthe guttata HOM05D005092 ORTHO05D006073 2.9e-53 212.6 187 62.6
CsaV3_5G001930 Cucumis sativus L. HOM05D005092 ORTHO05D006073 1.4e-52 210.3 201 60.2
Lalb_Chr14g0362701 Lupinus albus HOM05D005092 ORTHO05D006073 1.9e-52 209.9 150 74.0
Peaxi162Scf00074g00540 Petunia axillaris HOM05D005092 ORTHO05D006073 9.4e-52 207.6 154 70.8
unitig_62.g23053 Utricularia gibba HOM05D005092 ORTHO05D006073 2.1e-51 206.5 170 66.5
CAN.G567.28 Capsicum annuum HOM05D005092 ORTHO05D006073 2.3e-50 203.0 295 45.4
HPP92_003891 Vanilla planifolia HOM05D005092 ORTHO05D006073 2.5e-49 199.5 152 67.8
HPP92_003874 Vanilla planifolia HOM05D003037 ORTHO05D003659 9.7e-49 197.6 154 66.2
Migut.M00753 Erythranthe guttata HOM05D005092 ORTHO05D006073 2.4e-47 193.0 155 66.5
SalBow7G3059 Salvia bowleyana HOM05D005092 ORTHO05D006073 2.4e-47 193.0 206 55.3
SGA_v2.0_scaffold34G13767 Striga asiatica HOM05D005092 ORTHO05D006073 2.4e-47 193.0 125 73.6
SalBow7G2047 Salvia bowleyana HOM05D005092 ORTHO05D006073 6.9e-47 191.4 206 54.9
GSVIVG01019593001 Vitis vinifera HOM05D005092 ORTHO05D006073 1.3e-45 187.2 102 91.2
Os03g0843400 Oryza sativa ssp. japonica HOM05D005092 ORTHO05D006073 3.8e-45 185.7 118 78.0
Zm00001eb064130 Zea mays HOM05D005092 ORTHO05D006073 7.9e-43 177.9 212 50.0
vmacro11536 Vaccinium macrocarpon HOM05D005092 ORTHO05D006073 1.8e-42 176.8 222 52.3
ECA233G5643 Erigeron canadensis HOM05D005092 ORTHO05D006073 3.3e-41 172.6 113 77.0
Atru.chr10.1577 Acer truncatum HOM05D005092 ORTHO05D006073 4.5e-38 162.2 93 82.8
Pp3c9_9180 Physcomitrium patens HOM05D005092 ORTHO05D006073 4.5e-38 162.2 185 48.1
Mapoly0115s0060 Marchantia polymorpha HOM05D005092 ORTHO05D006073 2.5e-36 156.4 149 52.3
Pp3c15_17560 Physcomitrium patens HOM05D005092 ORTHO05D006073 9.4e-36 154.5 186 46.8
Sabra03G0103200 Salix brachista HOM05D005092 ORTHO05D006073 1.0e-34 151.0 213 47.4
Nn1g00282 Nelumbo nucifera HOM05D005092 ORTHO05D006073 2.3e-34 149.8 138 65.2
Eucgr.D01771 Eucalyptus grandis HOM05D005092 ORTHO05D006073 6.7e-34 148.3 81 90.1
CBR_g45689 Chara braunii HOM05D005092 ORTHO05D006073 2.6e-33 146.4 133 53.4
SMO141G0012 Selaginella moellendorffii HOM05D005092 ORTHO05D006073 4.4e-33 145.6 106 59.4
AagrBONN_evm.TU.Sc2ySwM_117.1171 Anthoceros agrestis HOM05D005092 ORTHO05D006073 2.2e-32 143.3 134 53.0
SEGI_34901 Sequoiadendron giganteum HOM05D005092 ORTHO05D006073 1.2e-30 137.5 96 67.7
CSS0046261 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 1.8e-26 123.6 67 88.1
CSS0048158 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 1.8e-26 123.6 67 88.1
vmacro22558 Vaccinium macrocarpon HOM05D005092 ORTHO05D006073 3.0e-26 122.9 80 76.2
ClCG01G001790 Citrullus lanatus HOM05D005092 ORTHO05D006073 5.2e-18 95.5 139 50.4
Oeu061337.1 Olea europaea HOM05D005092 ORTHO05D006073 2.0e-17 93.6 68 69.1
A01p35480 Brassica napus HOM05D005092 ORTHO05D006073 5.9e-14 82.0 50 76.0
HanXRQChr07g0190051 Helianthus annuus HOM05D005092 ORTHO05D006073 1.7e-13 80.5 121 38.8
A04p11060 Brassica napus HOM05D023372 ORTHO05D024533 1.1e-07 61.2 38 78.9


User provided reference genes

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