Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR402G0006 Trochodendron aralioides HOM05D003123 ORTHO05D003492 2.3e-55 218.8 121 100.0
TAR636G3586 Trochodendron aralioides HOM05D003123 ORTHO05D003492 9.5e-25 117.1 102 73.5
TAR636G3452 Trochodendron aralioides HOM05D003123 ORTHO05D003492 3.6e-24 115.2 102 73.5
Actinidia17974 Actinidia chinensis HOM05D003123 ORTHO05D003492 2.2e-21 105.9 102 54.9
Prupe.1G551600 Prunus persica HOM05D003123 ORTHO05D003492 1.9e-20 102.8 102 53.9
Oeu060760.2 Olea europaea HOM05D003123 ORTHO05D003492 2.7e-19 99.0 101 69.3
Thecc.08G187200 Theobroma cacao HOM05D003123 ORTHO05D003492 4.6e-19 98.2 108 49.1
PSO339G1610 Papaver somniferum HOM05D003123 ORTHO05D003492 1.0e-18 97.1 102 63.7
VMungo0647G0944 Vigna mungo HOM05D003123 ORTHO05D003492 1.0e-18 97.1 102 50.0
GSVIVG01025855001 Vitis vinifera HOM05D003123 ORTHO05D003492 2.3e-18 95.9 102 65.7
Cfa008143 Carpinus fangiana HOM05D003123 ORTHO05D003492 6.6e-18 94.4 103 65.0
Actinidia37868 Actinidia chinensis HOM05D003123 ORTHO05D003492 8.6e-18 94.0 108 63.0
Eucgr.A00559 Eucalyptus grandis HOM05D003123 ORTHO05D003492 1.1e-17 93.6 100 49.0
Eucgr.A00588 Eucalyptus grandis HOM05D003123 ORTHO05D003492 1.1e-17 93.6 100 62.0
CiPaw.03G019700 Carya illinoinensis HOM05D003123 ORTHO05D003492 1.5e-17 93.2 102 64.7
CiPaw.04G013100 Carya illinoinensis HOM05D003123 ORTHO05D003492 1.5e-17 93.2 102 65.7
Glyma.02G293300 Glycine max HOM05D003123 ORTHO05D003492 3.3e-17 92.0 102 45.1
Potri.019G081100 Populus trichocarpa HOM05D003123 ORTHO05D003492 3.3e-17 92.0 99 48.5
Prupe.7G229900 Prunus persica HOM05D003123 ORTHO05D003492 4.3e-17 91.7 102 51.0
MD15G1186600 Malus domestica HOM05D003123 ORTHO05D003492 5.6e-17 91.3 100 49.0
Cpa.g.sc66.19 Carica papaya HOM05D003123 ORTHO05D003492 9.5e-17 90.5 104 49.0
Glyma.02G292900 Glycine max HOM05D003123 ORTHO05D003492 9.5e-17 90.5 102 44.1
Gohir.A05G273300 Gossypium hirsutum HOM05D003123 ORTHO05D003492 9.5e-17 90.5 102 61.8
Phvul.005G025300 Phaseolus vulgaris HOM05D003123 ORTHO05D003492 9.5e-17 90.5 102 48.0
Cc11_g07170 Coffea canephora HOM05D003123 ORTHO05D003492 1.2e-16 90.1 102 49.0
Sc13g0000820 Simmondsia chinensis HOM05D003123 ORTHO05D003492 1.2e-16 90.1 107 56.1
FAN07G0209 Fragaria x ananassa HOM05D003123 ORTHO05D003492 1.6e-16 89.7 101 65.3
Aqoxy3G03721 Aquilegia oxysepala HOM05D003123 ORTHO05D003492 3.6e-16 88.6 102 61.8
Cfa020349 Carpinus fangiana HOM05D003123 ORTHO05D003492 3.6e-16 88.6 102 64.7
Eucgr.A00580 Eucalyptus grandis HOM05D003123 ORTHO05D003492 3.6e-16 88.6 106 43.4
RcHm_v2.0_Chr7g0228681 Rosa chinensis HOM05D003123 ORTHO05D003492 3.6e-16 88.6 102 63.7
Gohir.D05G275700 Gossypium hirsutum HOM05D003123 ORTHO05D003492 4.7e-16 88.2 100 62.0
QL09p005009 Quercus lobata HOM05D003123 ORTHO05D003492 4.7e-16 88.2 102 63.7
Manes.02G205100 Manihot esculenta HOM05D003123 ORTHO05D003492 6.2e-16 87.8 101 48.5
Atru.chr7.2717 Acer truncatum HOM05D003123 ORTHO05D003492 8.1e-16 87.4 102 61.8
Atru.chr10.2419 Acer truncatum HOM05D003123 ORTHO05D003492 1.4e-15 86.7 102 61.8
Cfa020344 Carpinus fangiana HOM05D003123 ORTHO05D003492 1.4e-15 86.7 113 59.3
FAN19G0040 Fragaria x ananassa HOM05D003123 ORTHO05D003492 1.4e-15 86.7 102 62.7
Peaxi162Scf00991g00337 Petunia axillaris HOM05D003123 ORTHO05D003492 1.4e-15 86.7 101 63.4
ATR1136G090 Amborella trichopoda HOM05D003123 ORTHO05D003492 2.3e-15 85.9 102 62.7
Eucgr.C02983 Eucalyptus grandis HOM05D003123 ORTHO05D003492 2.3e-15 85.9 103 53.4
Lalb_Chr04g0264151 Lupinus albus HOM05D003123 ORTHO05D003492 2.3e-15 85.9 114 55.3
TWI18G0703 Tripterygium wilfordii HOM05D003123 ORTHO05D003492 2.3e-15 85.9 103 50.5
FvH4_1g04960 Fragaria vesca HOM05D003123 ORTHO05D003492 4.0e-15 85.1 102 61.8
FAN23G0770 Fragaria x ananassa HOM05D003123 ORTHO05D003492 4.0e-15 85.1 102 61.8
FAN26G3425 Fragaria x ananassa HOM05D003123 ORTHO05D003492 4.0e-15 85.1 102 61.8
RcHm_v2.0_Chr2g0090581 Rosa chinensis HOM05D003123 ORTHO05D003492 5.2e-15 84.7 101 63.4
FAN12G0368 Fragaria x ananassa HOM05D003123 ORTHO05D003492 6.8e-15 84.3 102 63.7
Nitab4.5_0006880g0010 Nicotiana tabacum HOM05D003123 ORTHO05D003492 6.8e-15 84.3 102 62.7
PGSC0003DMG400007202 Solanum tuberosum HOM05D003123 ORTHO05D003492 6.8e-15 84.3 102 52.9
Atru.chr13.2 Acer truncatum HOM05D003123 ORTHO05D003492 8.9e-15 84.0 102 59.8
Cfa008139 Carpinus fangiana HOM05D003123 ORTHO05D003492 1.2e-14 83.6 102 62.7
FAN12G2362 Fragaria x ananassa HOM05D003123 ORTHO05D003492 2.0e-14 82.8 101 63.4
FvH4_4g26190 Fragaria vesca HOM05D003123 ORTHO05D003492 4.4e-14 81.6 101 63.4
HanXRQChr17g0548851 Helianthus annuus HOM05D003123 ORTHO05D003492 5.8e-14 81.3 105 58.1
Oeu023005.1 Olea europaea HOM05D003123 ORTHO05D003492 5.8e-14 81.3 101 61.4
CAN.G959.24 Capsicum annuum HOM05D003123 ORTHO05D003492 7.5e-14 80.9 102 59.8
TPR.G22518 Trifolium pratense HOM05D003123 ORTHO05D003492 1.7e-13 79.7 102 44.1
Solyc10g077110.1 Solanum lycopersicum HOM05D003123 ORTHO05D003492 2.2e-13 79.3 102 57.8
TPR.G1421 Trifolium pratense HOM05D003123 ORTHO05D003492 2.2e-13 79.3 101 58.4
Sopen10g028790 Solanum pennellii HOM05D003123 ORTHO05D003492 4.9e-13 78.2 102 57.8
MD02G1048300 Malus domestica HOM05D003123 ORTHO05D003492 8.3e-13 77.4 92 62.0
arahy.Tifrunner.gnm1.ann1.SAB2K2 Arachis hypogaea HOM05D003123 ORTHO05D003492 1.1e-12 77.0 113 40.7
Duzib235G1283 Durio zibethinus HOM05D003123 ORTHO05D003492 1.1e-12 77.0 108 41.7
DCAR_007178 Daucus carota HOM05D003123 ORTHO05D003492 1.4e-12 76.6 101 59.4
RcHm_v2.0_Chr7g0228771 Rosa chinensis HOM05D003123 ORTHO05D003492 1.4e-12 76.6 92 47.8
Eucgr.A00567 Eucalyptus grandis HOM05D003123 ORTHO05D003492 2.4e-12 75.9 102 41.2
Ca_12615_v3 Cicer arietinum L. HOM05D003123 ORTHO05D003492 4.1e-12 75.1 107 51.4
Sed0001197 Sechium edule HOM05D003123 ORTHO05D003492 4.1e-12 75.1 102 40.2
Sp5g27120 Schrenkiella parvula HOM05D003123 ORTHO05D003492 1.2e-11 73.6 132 35.6
SGA_v2.0_scaffold106G30554 Striga asiatica HOM05D003123 ORTHO05D003492 1.2e-11 73.6 102 54.9
CDE04G2204 Ceratophyllum demersum HOM05D003123 ORTHO05D003492 2.1e-11 72.8 102 55.9
arahy.Tifrunner.gnm1.ann1.W2RGT3 Arachis hypogaea HOM05D003123 ORTHO05D003492 3.5e-11 72.0 94 44.7
DCAR_030989 Daucus carota HOM05D003123 ORTHO05D003492 3.5e-11 72.0 157 33.1
RcHm_v2.0_Chr7g0228711 Rosa chinensis HOM05D003123 ORTHO05D003492 3.5e-11 72.0 88 63.6
Dinv22133 Davidia involucrata HOM05D003123 ORTHO05D003492 4.6e-11 71.6 102 59.8
BraA02t06811Z Brassica rapa HOM05D003123 ORTHO05D003492 6.0e-11 71.2 102 56.9
CDE02G4023 Ceratophyllum demersum HOM05D003123 ORTHO05D003492 7.8e-11 70.9 102 54.9
CsaV3_5G036840 Cucumis sativus L. HOM05D003123 ORTHO05D003492 7.8e-11 70.9 108 37.0
Dinv40311 Davidia involucrata HOM05D003123 ORTHO05D003492 7.8e-11 70.9 102 44.1
ClCG10G021960 Citrullus lanatus HOM05D003123 ORTHO05D003492 1.3e-10 70.1 114 36.0
Haze_09675 Corylus avellana HOM05D003123 ORTHO05D003492 1.3e-10 70.1 86 64.0
Haze_13900 Corylus avellana HOM05D003123 ORTHO05D003492 1.7e-10 69.7 103 56.3
Gohir.A05G123100 Gossypium hirsutum HOM05D003123 ORTHO05D003492 1.7e-10 69.7 108 42.6
ECA240G3446 Erigeron canadensis HOM05D003123 ORTHO05D003492 5.1e-10 68.2 104 38.5
Peaxi162Scf00538g00224 Petunia axillaris HOM05D003123 ORTHO05D003492 5.1e-10 68.2 101 56.4
BcaB05g24702 Brassica carinata HOM05D003123 ORTHO05D003492 8.6e-10 67.4 121 37.2
BolC2t08984H Brassica oleracea HOM05D003123 ORTHO05D003492 1.1e-09 67.0 117 36.8
Eucgr.A00553 Eucalyptus grandis HOM05D003123 ORTHO05D003492 1.1e-09 67.0 103 36.9
Lsat_1_v5_gn_9_99300 Lactuca sativa HOM05D003123 ORTHO05D003492 1.5e-09 66.6 108 32.4
CSS0039589 Camellia sinensis var. sinensis HOM05D003123 ORTHO05D003492 1.9e-09 66.2 103 53.4
arahy.Tifrunner.gnm1.ann1.HV9XRS Arachis hypogaea HOM05D003123 ORTHO05D003492 2.5e-09 65.9 101 51.5
BcaC03g15328 Brassica carinata HOM05D003123 ORTHO05D003492 2.5e-09 65.9 117 35.9
C02p29330 Brassica napus HOM05D003123 ORTHO05D003492 2.5e-09 65.9 117 35.9
MD15G1411000 Malus domestica HOM05D003123 ORTHO05D003492 2.5e-09 65.9 108 39.8
Ah.15g091760 Amaranthus hybridus HOM05D003123 ORTHO05D003492 3.3e-09 65.5 88 39.8
Sabra13G0093900 Salix brachista HOM05D003123 ORTHO05D003492 3.3e-09 65.5 70 47.1
Gohir.D05G124000 Gossypium hirsutum HOM05D003123 ORTHO05D003492 4.3e-09 65.1 108 40.7
Lj2C730T10 Lonicera japonica HOM05D003123 ORTHO05D003492 4.3e-09 65.1 103 57.3
MBI03_g18675_MAGBIO Magnolia biondii HOM05D003123 ORTHO05D003492 4.3e-09 65.1 102 55.9
Peaxi162Scf00324g00531 Petunia axillaris HOM05D003123 ORTHO05D003492 5.6e-09 64.7 101 53.5
Cfa020612 Carpinus fangiana HOM05D003123 ORTHO05D003492 7.3e-09 64.3 65 70.8
Zm00001eb353990 Zea mays HOM05D003123 ORTHO05D003492 9.5e-09 63.9 101 51.5
ClCG01G026000 Citrullus lanatus HOM05D003123 ORTHO05D003492 1.2e-08 63.5 102 37.3
COL.COLO4_33458 Corchorus olitorius HOM05D003123 ORTHO05D003492 1.2e-08 63.5 108 37.0
Sabra19G0092000 Salix brachista HOM05D003123 ORTHO05D003492 1.2e-08 63.5 64 50.0
Ciclev10012016m.g Citrus clementina HOM05D003123 ORTHO05D003492 1.6e-08 63.2 103 50.5
Gorai.009G128000 Gossypium raimondii HOM05D003123 ORTHO05D003492 1.6e-08 63.2 108 38.9
HanXRQChr10g0308101 Helianthus annuus HOM05D003123 ORTHO05D003492 1.6e-08 63.2 102 51.0
Manes.02G195200 Manihot esculenta HOM05D003123 ORTHO05D003492 1.6e-08 63.2 101 37.6
Nitab4.5_0012379g0010 Nicotiana tabacum HOM05D003123 ORTHO05D003492 1.6e-08 63.2 112 49.1
vmacro21662 Vaccinium macrocarpon HOM05D003123 ORTHO05D003492 1.6e-08 63.2 35 77.1
A02p17650 Brassica napus HOM05D003123 ORTHO05D003492 2.1e-08 62.8 120 47.5
AL2G31680 Arabidopsis lyrata HOM05D003123 ORTHO05D003492 4.7e-08 61.6 145 29.7
Thhalv10018661m.g Eutrema salsugineum HOM05D003123 ORTHO05D003492 6.2e-08 61.2 139 30.9
FAN26G0171 Fragaria x ananassa HOM05D003123 ORTHO05D003492 1.1e-07 60.5 87 56.3
ClCG05G026900 Citrullus lanatus HOM05D003123 ORTHO05D003492 1.4e-07 60.1 114 33.3
Lj1C1079T5 Lonicera japonica HOM05D003123 ORTHO05D003492 1.8e-07 59.7 102 50.0
Eucgr.A00584 Eucalyptus grandis HOM05D003123 ORTHO05D003492 2.3e-07 59.3 53 54.7
Lj1A24G68 Lonicera japonica HOM05D003123 ORTHO05D003492 2.3e-07 59.3 59 55.9
Phvul.008G270400 Phaseolus vulgaris HOM05D003123 ORTHO05D003492 4.0e-07 58.5 75 42.7
GSVIVG01028862001 Vitis vinifera HOM05D003123 ORTHO05D003492 4.0e-07 58.5 70 58.6
Nitab4.5_0000123g0230 Nicotiana tabacum HOM05D003123 ORTHO05D003492 5.2e-07 58.2 85 57.6
AT1G72050 Arabidopsis thaliana HOM05D003123 ORTHO05D003492 8.9e-07 57.4 152 28.3
Nn1g02901 Nelumbo nucifera HOM05D003123 ORTHO05D003492 1.5e-06 56.6 102 52.9
Nitab4.5_0001270g0190 Nicotiana tabacum HOM05D003123 ORTHO05D003492 2.0e-06 56.2 101 50.5
Potri.013G108600 Populus trichocarpa HOM05D003123 ORTHO05D003492 3.4e-06 55.5 70 65.7
Sc25g0005590 Simmondsia chinensis HOM05D003123 ORTHO05D003492 7.6e-06 54.3 102 35.3


User provided reference genes

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